Ss1.1-Pig4-TMW8052C04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAATATATCATCAATTGTTAACTGATAAATGCAGCTGAGTCCTAAATTCATTCTGAGAC CTTTCAGCCTCACACATGTAGGAAGTCTTATGGACCCTTCACTCAACAGACATTTATTGT GCCCCCCTGAGCATCTTGCACAGCACTCAACAGATCTAGAGTCCAGAGGGGCATTAATCC TGCAAGGAAGCTGGGATAAAGATCAGTTCATAGCCTCAGAGGTGGAGCAGAGATGGTTGG CAGGGTAGAGTCGGCAGTGAGGGTCTCTATGCATGAGTTGAAAAGCTGCCCAAGGAGAGG CAGAGGCGATAACCAGAGACAAGGTATCAACAGCAGAACAGTGTTAATGCTGTAGGCCAA ACACAGTTGGGAATTGGTGAGGAAATCACAATCTTCCCACCAGAATGTGGAACTCAGGGT AGTGTGGCAAGTCATGCTCAATAACCATTCCTGTCCAAGGCCCATGTGCATAGTTGTCTT TGCTGTTTGTTCCCAATGTTTGATGGTAATTTCCTCAGGACCCGGGATGTCTACAACCTG GTCAGTCAGTCTTTCTTTCTCTCTCTCTCTCTTTCTTGGCCCATACTTGTGGCATAAGGA AGGTTCCCAGGCAAGGGGTCCAGTCAGAGCTACAGCTGCCAGCCTACGCCACAGCCACAG CAACACTAGATCTGAGCCCCGTCTGCAACCTACACCACAGCTCACTGCAACGCTGGATCC TTAACCCACTGAGCGAGGCCAGGGATTGAACCTGCAACCTCATGGTTACTAGTCTGATTC GTTCCTGCTGCACCACAATGGGAACTTCAACCTGGTCTTTCTTTACTCATATTCAAGAAG GAGTAAGTCGTTGACTTAGTATAAGAAGAGATCTCAGGGATCTAACCTCCTTCGACTATG TGATAGAGTAATGGTGCTAGTTCCTCTGTCATGACAGTTCCGCTGTCACCCCTTTGTTGG GTGTGAAATGGTCACAACTTGACAAATCTAAAATTATTACAGAAAAATTTCTTATAGTTT TGTTACAAGAATTCTTCTCTTTTTACTTTTTGCCTTGTACAGTTAAAAGTTGAGGGGCTG GTCAACATCAAAACTTATACACATGTTTATAGCAGAATTACTCATAATAACCACAAGTTG GAAACAACCCAAATGCCCATCAACTGATGAATGGATAAATAAAATGTAGAATAGCCATAC AATAGGATATTATTTAATTATAAAAAGAAATTAAGTGCTCATACATGCTACATAATGAAC CTTGCAAATATTATGCTAAGTGAAAAAAACAGGTAAATATATTAAGATAGAAGCAGATTA TAGGTTGCCTGAGGCTGGAATGATTGGAGGCTGGGGAGGGGAGTGATTGGAATGGGTACA GGGTTTCTTTGGGGGTTGATTAAAATGTTCTGAAATTATTGTGGTGATGGTTACTTAACT CTGTGAATCTACTAAAAACCATTGAATTGTAGACCTTAAATGGGTGAACTGTATGGTATG TGAATTATATCTTAATAAAGTTAATAAACAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAATATATCATCAATTGTTAACTGATAAATGCAGCTGAGTCCTAAATTCATTCTGAGAC CTTTCAGCCTCACACATGTAGGAAGTCTTATGGACCCTTCACTCAACAGACATTTATTGT GCCCCCCTGAGCATCTTGCACAGCACTCAACAGATCTAGAGTCCAGAGGGGCATTAATCC TGCAAGGAAGCTGGGATAAAGATCAGTTCATAGCCTCAGAGGTGGAGCAGAGATGGTTGG CAGGGTAGAGTCGGCAGTGAGGGTCTCTATGCATGAGTTGAAAAGCTGCCCAAGGAGAGG CAGAGGCGATAACCAGAGACAAGGTATCAACAGCAGAACAGTGTTAATGCTGTAGGCCAA ACACAGTTGGGAATTGGTGAGGAAATCACAATCTTCCCACCAGAATGTGGAACTCAGGGT AGTGTGGCAAGTCATGCTCAATAACCATTCCTGTCCAAGGCCCATGTGCATAGTTGTCTT TGCTGTTTGTTCCCAATGTTTGATGGTAATTTCCTCAGGACCCGGGATGTCTACAACCTG GTCAGTCAGTCTTTCTTTCTCTCTCTCTCTCTTTCTTGGCCCATACTTGTGGCATAAGGA AGGTTCCCAGGCAAGGGGTCCAGTCAGAGCTACAGCTGCCAGCCTACGCCACAGCCACAG CAACACTAGATCTGAGCCCCGTCTGCAACCTACACCACAGCTCACTGCAACGCTGGATCC TTAACCCACTGAGCGAGGCCAGGGATTGAACCTGCAACCTCATGGTTACTAGTCTGATTC GTTCCTGCTGCACCACAATGGGAACTTCAACCTGGTCTTTCTTTACTCATATTCAAGAAG GAGTAAGTCGTTGACTTAGTATAAGAAGAGATCTCAGGGATCTAACCTCCTTCGACTATG TGATAGAGTAATGGTGCTAGTTCCTCTGTCATGACAGTTCCGCTGTCACCCCTTTGTTGG GTGTGAAATGGTCACAACTTGACAAATCTAAAATTATTACAGAAAAATTTCTTATAGTTT TGTTACAAGAATTCTTCTCTTTTTACTTTTTGCCTTGTACAGTTAAAAGTTGAGGGGCTG GTCAACATCAAAACTTATACACATGTTTATAGCAGAATTACTCATAATAACCACAAGTTG GAAACAACCCAAATGCCCATCAACTGATGAATGGATAAATAAAATGTAGAATAGCCATAC AATAGGATATTATTTAATTATAAAAAGAAATTAAGTGCTCATACATGCTACATAATGAAC CTTGCAAATATTATGCTAAGTGAAAAAAACAGGTAAATATATTAAGATAGAAGCAGATTA TAGGTTGCCTGAGGCTGGAATGATTGGAGGCTGGGGAGGGGAGTGATTGGAATGGGTACA GGGTTTCTTTGGGGGTTGATTAAAATGTTCTGAAATTATTGTGGTGATGGTTACTTAACT CTGTGAATCTACTAAAAACCATTGAATTGTAGACCTTAAATGGGTGAACTGTATGGTATG TGAATTATATCTTAATAAAGTTAATAAACAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-1238, - strand, RNAz p=0.952188 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-1238, - strand, RNAz p=0.952188 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 3-532, gnl|bosTau2|chr1 (50255216-50254698) | |
| 1078-1305, gnl|bosTau2|chr11 (1123239-1123007) | |
| 1078-1305, gnl|canFam2|chr17 (38638083-38638349) | |
| 1078-1305, gnl|hg17|chr2 (111489364-111489643) | |
| 1078-1305, gnl|Hg17|chr2 (111489449-111489642) | |
| 1078-1305, gnl|mm7|chr2 (127802280-127802524) | |
| 1078-1305, gnl|panTro1|chr12 (114616870-114617149) | |
| 1078-1305, gnl|rheMac2|chr13 (110384060-110384337) | |
| 1078-1305, gnl|rn3|chr3 (115517495-115517729) | |
| 1082-1299, gnl|bosTau2|chr10 (51427558-51427777) | |
| 1307-1546, gnl|bosTau2|chr4 (39262896-39263140) | |
| 1307-1546, gnl|canFam2|chrUn (38028334-38030053) | |
| 1307-1546, gnl|hg17|chr7 (44159937-44161879) | |
| 1307-1546, gnl|Hg17|chr7 (44160215-44160454) | |
| 1307-1546, gnl|mm7|chr11 (6036919-6038568) | |
| 1307-1546, gnl|Mm7|chr11 (6037172-6037406) | |
| 1307-1546, gnl|panTro1|chr6 (45673565-45675508) | |
| 1307-1546, gnl|rheMac2|chr3 (81994503-81992556) | |
| 1310-1544, gnl|bosTau2|chr21 (19281472-19281708) | |
| 1310-1544, gnl|canFam2|chr3 (59568287-59567929) | |
| 1310-1544, gnl|dasNov1|scaffold_31698 (895-476) | |
| 1310-1544, gnl|hg17|chr15 (79063834-79064209) | |
| 1310-1544, gnl|Hg17|chr15 (79063957-79064184) | |
| 1310-1544, gnl|loxAfr1|scaffold_4640 (69572-69201) | |
| 1310-1544, gnl|panTro1|chr16 (79787152-79787527) | |
| 1310-1544, gnl|rheMac2|chr7 (60137721-60138108) | |
| 1311-1543, gnl|bosTau2|chr10 (9642882-9643113) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-532, gnl|bosTau2|chr1 (50255216-50254698) | |
| 1078-1305, gnl|bosTau2|chr11 (1123239-1123007) | |
| 1078-1305, gnl|canFam2|chr17 (38638083-38638349) | |
| 1078-1305, gnl|hg17|chr2 (111489364-111489643) | |
| 1078-1305, gnl|Hg17|chr2 (111489449-111489642) | |
| 1078-1305, gnl|mm7|chr2 (127802280-127802524) | |
| 1078-1305, gnl|panTro1|chr12 (114616870-114617149) | |
| 1078-1305, gnl|rheMac2|chr13 (110384060-110384337) | |
| 1078-1305, gnl|rn3|chr3 (115517495-115517729) | |
| 1082-1299, gnl|bosTau2|chr10 (51427558-51427777) | |
| 1307-1546, gnl|bosTau2|chr4 (39262896-39263140) | |
| 1307-1546, gnl|canFam2|chrUn (38028334-38030053) | |
| 1307-1546, gnl|hg17|chr7 (44159937-44161879) | |
| 1307-1546, gnl|Hg17|chr7 (44160215-44160454) | |
| 1307-1546, gnl|mm7|chr11 (6036919-6038568) | |
| 1307-1546, gnl|Mm7|chr11 (6037172-6037406) | |
| 1307-1546, gnl|panTro1|chr6 (45673565-45675508) | |
| 1307-1546, gnl|rheMac2|chr3 (81994503-81992556) | |
| 1310-1544, gnl|bosTau2|chr21 (19281472-19281708) | |
| 1310-1544, gnl|canFam2|chr3 (59568287-59567929) | |
| 1310-1544, gnl|dasNov1|scaffold_31698 (895-476) | |
| 1310-1544, gnl|hg17|chr15 (79063834-79064209) | |
| 1310-1544, gnl|Hg17|chr15 (79063957-79064184) | |
| 1310-1544, gnl|loxAfr1|scaffold_4640 (69572-69201) | |
| 1310-1544, gnl|panTro1|chr16 (79787152-79787527) | |
| 1310-1544, gnl|rheMac2|chr7 (60137721-60138108) | |
| 1311-1543, gnl|bosTau2|chr10 (9642882-9643113) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| kid (1.03788) | |
| cki (0.495704) | |
| lun (0.451467) | |
| ldo (0.291008) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| sin (0.174948) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| ste (0.135208) | |
| ret (0.128733) | |
| jca (0.11396) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.03788) | |
| cki (0.495704) | |
| lun (0.451467) | |
| ldo (0.291008) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| sin (0.174948) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| ste (0.135208) | |
| ret (0.128733) | |
| jca (0.11396) |