Non-Coding RNA Search

Ss1.1-Pig4-TMW8052C11.3

Sequence:


               
               CCGGCGTCTTTAGGGCCTAAGGCTGGGTTCCAACCTGGCTTCCTGAGATGTCGGTGGCCT
TCGTACCCGACTCGTTGAGAGGCAAGGCGGAAGTCAATCAGGAGACTATCCAGCGGGTGA
GCGCTAACGCGGGCAGAGATTTTTTTAGTAGGGACCCTGAAGGGCCGCAGGCTGGGTTCC
AACCTGGCTTCCTGAGATGTCGGTGGCCTTCGTACCCGACTCGTTGAGAGGCAAGGCGGA
AGTCAATCAGGAGACTATCCAGCGGCTCTTAGAGGAGAATGACCAGCTGATCCGCTGTAT
CGTGGAATATCAGAACAAAGGCCGGGCTAATGAGTGCGTCCAGTACCAGCATGTGTTACA
CAGAAATCTCATTTATTTGGCTACCATCGCAGATGCCAACCCAACCAGTGTTTCAAAAGC
AATGGAATAATCTTCCAGTTGATTGCTCTGAGGAGTAATTGAATGTAACCTATTTCCTGT
GACATAGAAACAGGATGTTTACCAACTCAACTGCTTAGAACATGAATGGAACTTCAGTGG
CTCTTTTAAAAATGTGAAAATGTGAAGAAAGCTACTAAGTTAACCATGTTCTCAATGTAA
ATATTTATTTTAATAATTGGATTCCCTCAATTAAGTTGACTCCAGGTGTCCTCCTTCCTG
AAATAGGCATGTTTGGATAACAAAGACATTACAGGCATCTTCAAGTCTGCCTTTTTAGTT
TCAGCCTGAAGAGGAGACTGAACAGGTGTTGGGCAATTAGCAGACTCCCCCAACTGAGAC
CCTGTCACATGGCCAAGTAACTATGTGCTCCCTCCTTCCAGTGTGTGGTTGTAGACCCCC
TGGCTGCTCTTTACAGGTCGTTTTGAAATAAAAACCCTTGGAGTTCCCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCGTCTTTAGGGCCTAAGGCTGGGTTCCAACCTGGCTTCCTGAGATGTCGGTGGCCT
TCGTACCCGACTCGTTGAGAGGCAAGGCGGAAGTCAATCAGGAGACTATCCAGCGGGTGA
GCGCTAACGCGGGCAGAGATTTTTTTAGTAGGGACCCTGAAGGGCCGCAGGCTGGGTTCC
AACCTGGCTTCCTGAGATGTCGGTGGCCTTCGTACCCGACTCGTTGAGAGGCAAGGCGGA
AGTCAATCAGGAGACTATCCAGCGGCTCTTAGAGGAGAATGACCAGCTGATCCGCTGTAT
CGTGGAATATCAGAACAAAGGCCGGGCTAATGAGTGCGTCCAGTACCAGCATGTGTTACA
CAGAAATCTCATTTATTTGGCTACCATCGCAGATGCCAACCCAACCAGTGTTTCAAAAGC
AATGGAATAATCTTCCAGTTGATTGCTCTGAGGAGTAATTGAATGTAACCTATTTCCTGT
GACATAGAAACAGGATGTTTACCAACTCAACTGCTTAGAACATGAATGGAACTTCAGTGG
CTCTTTTAAAAATGTGAAAATGTGAAGAAAGCTACTAAGTTAACCATGTTCTCAATGTAA
ATATTTATTTTAATAATTGGATTCCCTCAATTAAGTTGACTCCAGGTGTCCTCCTTCCTG
AAATAGGCATGTTTGGATAACAAAGACATTACAGGCATCTTCAAGTCTGCCTTTTTAGTT
TCAGCCTGAAGAGGAGACTGAACAGGTGTTGGGCAATTAGCAGACTCCCCCAACTGAGAC
CCTGTCACATGGCCAAGTAACTATGTGCTCCCTCCTTCCAGTGTGTGGTTGTAGACCCCC
TGGCTGCTCTTTACAGGTCGTTTTGAAATAAAAACCCTTGGAGTTCCCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|17389541|gb|AAH17804.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17389541|gb|AAH17804.1|

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               196-630, gnl|bosTau2|chr11 (22975606-22976011)
               

               
               196-630, gnl|Mm7|chr19 (37561360-37561752)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-630, gnl|bosTau2|chr11 (22975606-22976011)
               

               
               196-630, gnl|Mm7|chr19 (37561360-37561752)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

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               sme (0.91631)
               

               
               bfe (0.749288)
               

               
               sto (0.719295)
               

               
               hea (0.613497)
               

               
               eye (0.511509)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               bla (0.248694)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.91631)
               

               
               bfe (0.749288)
               

               
               sto (0.719295)
               

               
               hea (0.613497)
               

               
               eye (0.511509)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               ssp (0.406559)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               bla (0.248694)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	196-630, gnl\|bosTau2\|chr11 (22975606-22976011)
	196-630, gnl\|Mm7\|chr19 (37561360-37561752)

	sme (0.91631)
	bfe (0.749288)
	sto (0.719295)
	hea (0.613497)
	eye (0.511509)
	cst (0.420109)
	amn (0.417711)
	che (0.408942)
	ssp (0.406559)
	col (0.390016)
	nlu (0.383362)
	sin (0.349895)
	rec (0.346141)
	vin (0.332557)
	cje (0.330469)
	isp (0.300752)
	bla (0.248694)
	cly (0.241284)
	mas (0.210305)
	tes (0.207814)
	jej (0.197844)
	eje (0.197668)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	ton (0.1755)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	cli (0.152812)
	cag (0.151194)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)