Non-Coding RNA Search

Ss1.1-Pig4-TMW8052D04.3

Sequence:


               
               CGACAACAAGGATGGGACATACTGCATTTCCTACACCCCCAAGGAACCTGGTGTCTACAC
GGTGTTGGTCTGTATCAAGGAGCAGCATGTGCAGGGCTCACCATTCACTGTGACTGTGAG
GAAAAGGCACCGGCCACACCCAGGCGTGTTTCACTGCTGCACCTTTTGCTCCAGCGGAGG
CCAGAAGACTGTTCGCTGTGCGTGTGGAGGCACCATGCCAGGTGGGTACCTAGGCTGTGG
TCACGGACACAAAGGCCACCCAGGGCGTCCCCACTGGTCGTGCTGTGGGAAGTTGACTGA
GAAGTCGGAGTGCACGTGGGCAGGTGGCCAGAGCGCACCAAGGGGTCTGCTGAGGACAGT
GGCACTCTGATGGCTCCCTGGGTGCGTGGTCATGGCTCCGGCCAGCACAACTTCAGACTC
CCGGAGGACCCCAGACCTACGTTCTGAAGAAACAGACAGAATTAAAAGCAAAGTGCCTTA
CGTTATACCCGAGTCCAAGGACGTTTTGTTTTACTCCCTGCTTGTATGTGCAGGTGGTTG
AGCACCAGAGACCAGACCACGTCTCTCTTCTTGGCCAAAGGTTTTTTTTGGGGGGGGGGG
GCAGGCAGTCAGCGGTCTGGTTAAAGTTAACACCGATGGTGCCCCTCATCGGGTCCTTTT
AAAAAATACACACGGAAGTCCGGTAAGATCGCAGCTGTACCAAACAGCTAAAAGAGATTT
TAGAATCCTACAGTGTGTATCTTAAAAATCTGATCTGTTCATCTTTAAGATCAGATGGAT
CTTGGAAACTAGCCGTTTTTAAAGCTGGCTTTCTAGGCGCATAATGTATGCACTACGGTT
TTAAAACAGTGTGCGTGTGTTTTTGTATGACGGAGCCCGTTCATCGGAAGTCTAAATTGC
CTAGAAATAACGTACCATGTTGACTAGCAGAGTGGTATTAGAGGTGATCTCAGTGTTAAG
TAGGAAAATCTAGTTCAATAAACTCTGTATCACCCCTCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACAACAAGGATGGGACATACTGCATTTCCTACACCCCCAAGGAACCTGGTGTCTACAC
GGTGTTGGTCTGTATCAAGGAGCAGCATGTGCAGGGCTCACCATTCACTGTGACTGTGAG
GAAAAGGCACCGGCCACACCCAGGCGTGTTTCACTGCTGCACCTTTTGCTCCAGCGGAGG
CCAGAAGACTGTTCGCTGTGCGTGTGGAGGCACCATGCCAGGTGGGTACCTAGGCTGTGG
TCACGGACACAAAGGCCACCCAGGGCGTCCCCACTGGTCGTGCTGTGGGAAGTTGACTGA
GAAGTCGGAGTGCACGTGGGCAGGTGGCCAGAGCGCACCAAGGGGTCTGCTGAGGACAGT
GGCACTCTGATGGCTCCCTGGGTGCGTGGTCATGGCTCCGGCCAGCACAACTTCAGACTC
CCGGAGGACCCCAGACCTACGTTCTGAAGAAACAGACAGAATTAAAAGCAAAGTGCCTTA
CGTTATACCCGAGTCCAAGGACGTTTTGTTTTACTCCCTGCTTGTATGTGCAGGTGGTTG
AGCACCAGAGACCAGACCACGTCTCTCTTCTTGGCCAAAGGTTTTTTTTGGGGGGGGGGG
GCAGGCAGTCAGCGGTCTGGTTAAAGTTAACACCGATGGTGCCCCTCATCGGGTCCTTTT
AAAAAATACACACGGAAGTCCGGTAAGATCGCAGCTGTACCAAACAGCTAAAAGAGATTT
TAGAATCCTACAGTGTGTATCTTAAAAATCTGATCTGTTCATCTTTAAGATCAGATGGAT
CTTGGAAACTAGCCGTTTTTAAAGCTGGCTTTCTAGGCGCATAATGTATGCACTACGGTT
TTAAAACAGTGTGCGTGTGTTTTTGTATGACGGAGCCCGTTCATCGGAAGTCTAAATTGC
CTAGAAATAACGTACCATGTTGACTAGCAGAGTGGTATTAGAGGTGATCTCAGTGTTAAG
TAGGAAAATCTAGTTCAATAAACTCTGTATCACCCCTCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T2K6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T2K6_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               90-223, gnl|bosTau2|chr9 (64080216-64080083)
               

               
               90-223, gnl|Hg17|chr1 (117368154-117368021)
               

               
               90-223, gnl|Mm7|chr3 (100724629-100724762)
               


               
               569-1005, gnl|bosTau2|chr10 (34366295-34366739)
               

               
               569-1005, gnl|Hg17|chr15 (75125858-75125428)
               

               
               569-1005, gnl|Mm7|chr9 (56163967-56163547)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-223, gnl|bosTau2|chr9 (64080216-64080083)
               

               
               90-223, gnl|Hg17|chr1 (117368154-117368021)
               

               
               90-223, gnl|Mm7|chr3 (100724629-100724762)
               


               
               569-1005, gnl|bosTau2|chr10 (34366295-34366739)
               

               
               569-1005, gnl|Hg17|chr15 (75125858-75125428)
               

               
               569-1005, gnl|Mm7|chr9 (56163967-56163547)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               eye (0.341006)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	90-223, gnl\|bosTau2\|chr9 (64080216-64080083)
	90-223, gnl\|Hg17\|chr1 (117368154-117368021)
	90-223, gnl\|Mm7\|chr3 (100724629-100724762)

	569-1005, gnl\|bosTau2\|chr10 (34366295-34366739)
	569-1005, gnl\|Hg17\|chr15 (75125858-75125428)
	569-1005, gnl\|Mm7\|chr9 (56163967-56163547)

	elu (0.385356)
	eye (0.341006)
	rec (0.17307)
	fhi (0.169578)
	isp (0.150376)
	ova (0.129132)
	ese (0.126502)
	ecc (0.115035)