Ss1.1-Pig4-TMW8052D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTT AACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCATCACCGCAACCAGTG CCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAGCGGTTCAGCG AGGAAGAATGCCCCCAACTCAACCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCC CCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCGGAGCCCTA CCCCACGTCGCGCTACGGCAGCCAATGCATGCAGCCCAACAACATCATGGGCATCGAGAA CATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGAAACATCCC CTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTGACCTGGAGCGA GCTGTTCGTGCTCAACGCAGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCGCTGCTGGC CGCCGCCGGCCTGCACGCCTCGCCTATGTCCGCCGACCGCGTCGTGGCCTTCATGGACCA CATCCGCATCTTCCAAGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCGGCCGA GTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAGATGCCTGTGGCCTGTCGGATGC CGCCCACATCGAGAGCCTGCAGGAGAAATCGCAGTGCGCGCTGGAGGAGTACGTGAGAAG CCAGTACCCTAACCAACCCAGCCGCTTCGGCAAACTGCTACTGCGACTGCCCTCGCTGCG CACCGTCTCCTCCTCCGTCATTGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCC CATCGAAACTCTCATCCGCGATATGTTACTGTCCGGGAGCAGCTTCAACTGGCCTTACAT GTCCATCCAGTGCTCCTAGACCTTGGGCGCTTCTCACCTGCCCCCGACCCCACTAGAGAC TCACAGGACCGGCGCGGGCCATGGACTCCAAAGCCGCGGGACATCAGGCGGCTGATGCTG GGTGCGGTGGGCTGGGCACGCGGGAGGAGGGCCGGGTGGACAGGAGCAGCCCACCCTGCA GAAATGCAACCCGAGCTGCAAACCAAGAGAAAAAGAGACTCTTTTTAGGATCTGATCTGT GAACACTATGGAAAGGAAAAAAAAAAAAAAGAAAAAAAGAAAGAAAGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTT AACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCATCACCGCAACCAGTG CCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAGCGGTTCAGCG AGGAAGAATGCCCCCAACTCAACCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCC CCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCGGAGCCCTA CCCCACGTCGCGCTACGGCAGCCAATGCATGCAGCCCAACAACATCATGGGCATCGAGAA CATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGAAACATCCC CTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTGACCTGGAGCGA GCTGTTCGTGCTCAACGCAGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCGCTGCTGGC CGCCGCCGGCCTGCACGCCTCGCCTATGTCCGCCGACCGCGTCGTGGCCTTCATGGACCA CATCCGCATCTTCCAAGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCGGCCGA GTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAGATGCCTGTGGCCTGTCGGATGC CGCCCACATCGAGAGCCTGCAGGAGAAATCGCAGTGCGCGCTGGAGGAGTACGTGAGAAG CCAGTACCCTAACCAACCCAGCCGCTTCGGCAAACTGCTACTGCGACTGCCCTCGCTGCG CACCGTCTCCTCCTCCGTCATTGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCC CATCGAAACTCTCATCCGCGATATGTTACTGTCCGGGAGCAGCTTCAACTGGCCTTACAT GTCCATCCAGTGCTCCTAGACCTTGGGCGCTTCTCACCTGCCCCCGACCCCACTAGAGAC TCACAGGACCGGCGCGGGCCATGGACTCCAAAGCCGCGGGACATCAGGCGGCTGATGCTG GGTGCGGTGGGCTGGGCACGCGGGAGGAGGGCCGGGTGGACAGGAGCAGCCCACCCTGCA GAAATGCAACCCGAGCTGCAAACCAAGAGAAAAAGAGACTCTTTTTAGGATCTGATCTGT GAACACTATGGAAAGGAAAAAAAAAAAAAAGAAAAAAAGAAAGAAAGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 10-170, gnl|bosTau2|chr11 (85109103-85109263) | |
| 10-170, gnl|canFam2|chr9 (53895064-53895259) | |
| 10-170, gnl|danRer3|chr20 (42532692-42532878) | |
| 10-170, gnl|dasNov1|scaffold_302213 (402-203) | |
| 10-170, gnl|echTel1|scaffold_220816 (2838-3042) | |
| 10-170, gnl|fr1|chrUn (63677042-63676853) | |
| 10-170, gnl|galGal2|chr17 (3090242-3090035) | |
| 10-170, gnl|hg17|chr9 (134526712-134526914) | |
| 10-170, gnl|Hg17|chr9 (134526750-134526910) | |
| 10-170, gnl|loxAfr1|scaffold_109298 (5460-5256) | |
| 10-170, gnl|mm7|chr2 (27749055-27749258) | |
| 10-170, gnl|Mm7|chr2 (27749094-27749254) | |
| 10-170, gnl|monDom2|scaffold_51 (11398688-11398890) | |
| 10-170, gnl|oryCun1|scaffold_166833 (9579-9365) | |
| 10-170, gnl|panTro1|chr11 (119402589-119402791) | |
| 10-170, gnl|rheMac2|chr15 (3890656-3890454) | |
| 10-170, gnl|rn3|chr3 (6671316-6671519) | |
| 10-170, gnl|tetNig1|chrUn_random (10505989-10506191) | |
| 10-170, gnl|xenTro1|scaffold_95 (1709172-1708970) | |
| 348-693, gnl|bosTau2|chr7 (2838169-2838514) | |
| 348-693, gnl|Hg17|chr19 (17207658-17207313) | |
| 348-693, gnl|Mm7|chr8 (69843145-69842800) | |
| 696-969, gnl|bosTau2|chr21 (5752293-5752566) | |
| 696-969, gnl|canFam2|chr3 (46998237-46997938) | |
| 696-969, gnl|danRer3|chr18 (27126471-27126185) | |
| 696-969, gnl|dasNov1|scaffold_23043 (17103-17393) | |
| 696-969, gnl|echTel1|scaffold_296364 (513-810) | |
| 696-969, gnl|fr1|chrUn (143493942-143493653) | |
| 696-969, gnl|galGal2|chr10 (16349515-16349805) | |
| 696-969, gnl|hg17|chr15 (94681559-94681858) | |
| 696-969, gnl|Hg17|chr15 (94681578-94681851) | |
| 696-969, gnl|loxAfr1|scaffold_35964 (14210-13913) | |
| 696-969, gnl|mm7|chr7 (66210682-66210384) | |
| 696-969, gnl|Mm7|chr7 (66210662-66210389) | |
| 696-969, gnl|monDom2|scaffold_12 (65392320-65392030) | |
| 696-969, gnl|oryCun1|scaffold_122450 (3409-3708) | |
| 696-969, gnl|panTro1|chr16 (95701120-95701419) | |
| 696-969, gnl|rheMac2|chr7 (76238936-76239233) | |
| 696-969, gnl|rn3|chr1 (125359748-125359458) | |
| 696-969, gnl|tetNig1|chr13 (2747286-2747592) | |
| 696-969, gnl|xenTro1|scaffold_308 (320875-321174) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-170, gnl|bosTau2|chr11 (85109103-85109263) | |
| 10-170, gnl|canFam2|chr9 (53895064-53895259) | |
| 10-170, gnl|danRer3|chr20 (42532692-42532878) | |
| 10-170, gnl|dasNov1|scaffold_302213 (402-203) | |
| 10-170, gnl|echTel1|scaffold_220816 (2838-3042) | |
| 10-170, gnl|fr1|chrUn (63677042-63676853) | |
| 10-170, gnl|galGal2|chr17 (3090242-3090035) | |
| 10-170, gnl|hg17|chr9 (134526712-134526914) | |
| 10-170, gnl|Hg17|chr9 (134526750-134526910) | |
| 10-170, gnl|loxAfr1|scaffold_109298 (5460-5256) | |
| 10-170, gnl|mm7|chr2 (27749055-27749258) | |
| 10-170, gnl|Mm7|chr2 (27749094-27749254) | |
| 10-170, gnl|monDom2|scaffold_51 (11398688-11398890) | |
| 10-170, gnl|oryCun1|scaffold_166833 (9579-9365) | |
| 10-170, gnl|panTro1|chr11 (119402589-119402791) | |
| 10-170, gnl|rheMac2|chr15 (3890656-3890454) | |
| 10-170, gnl|rn3|chr3 (6671316-6671519) | |
| 10-170, gnl|tetNig1|chrUn_random (10505989-10506191) | |
| 10-170, gnl|xenTro1|scaffold_95 (1709172-1708970) | |
| 348-693, gnl|bosTau2|chr7 (2838169-2838514) | |
| 348-693, gnl|Hg17|chr19 (17207658-17207313) | |
| 348-693, gnl|Mm7|chr8 (69843145-69842800) | |
| 696-969, gnl|bosTau2|chr21 (5752293-5752566) | |
| 696-969, gnl|canFam2|chr3 (46998237-46997938) | |
| 696-969, gnl|danRer3|chr18 (27126471-27126185) | |
| 696-969, gnl|dasNov1|scaffold_23043 (17103-17393) | |
| 696-969, gnl|echTel1|scaffold_296364 (513-810) | |
| 696-969, gnl|fr1|chrUn (143493942-143493653) | |
| 696-969, gnl|galGal2|chr10 (16349515-16349805) | |
| 696-969, gnl|hg17|chr15 (94681559-94681858) | |
| 696-969, gnl|Hg17|chr15 (94681578-94681851) | |
| 696-969, gnl|loxAfr1|scaffold_35964 (14210-13913) | |
| 696-969, gnl|mm7|chr7 (66210682-66210384) | |
| 696-969, gnl|Mm7|chr7 (66210662-66210389) | |
| 696-969, gnl|monDom2|scaffold_12 (65392320-65392030) | |
| 696-969, gnl|oryCun1|scaffold_122450 (3409-3708) | |
| 696-969, gnl|panTro1|chr16 (95701120-95701419) | |
| 696-969, gnl|rheMac2|chr7 (76238936-76239233) | |
| 696-969, gnl|rn3|chr1 (125359748-125359458) | |
| 696-969, gnl|tetNig1|chr13 (2747286-2747592) | |
| 696-969, gnl|xenTro1|scaffold_308 (320875-321174) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ecc (0.805246) | |
| ebs (0.591506) | |
| eru (0.240096) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| cki (0.165235) | |
| fco (0.157208) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| sug (0.127291) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.805246) | |
| ebs (0.591506) | |
| eru (0.240096) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| cki (0.165235) | |
| fco (0.157208) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| sug (0.127291) |