Non-Coding RNA Search

Ss1.1-Pig4-TMW8052D06.3

Sequence:


               
               CTGATGTCTTTGGTAACCTATCCTCATCCCTCATAAAAGCATGATGTTGAATAACTGTTG
GAAAACTTCAAACCCATTAAAATCTAAAAGTTTAATTCTTTTTTTAACATGGATCATTCA
GCACTGGGAAATAGACCCAACATGTGAGTAGGAGCAAAGGAAAAAGCAGAATCATTCACA
TGTTTTGTGTTCACATCTGTTCTCTACCTACCTGTTCATTTAATTTCAACCTTTTTATTT
GATAAGAGATTTTTTTTAATATATGAAGTCATCTAACGACCTCATTAATGAAGTTGAAAT
ATATTTTCAAAGTCCAAATTTAAATTGCAGCATCTAAAAATAGCTGTGTAAGTGGAAATC
AAATTTTAAAAGATATCTTTTTTCTACACGTAGTTAAGTAGTTAAAATCATGACATAAAT
TTAGAAACTACTCAGAATAATTATATAGAATTTCCTCAAATATTTGTTAACTGGCACGTG
TTGACCAAGTAAATCCAACTTGAAAGTTCTTCCTCTGTTCCATTGTATCCCACGGCAGTC
TCCTCTGTTTGGTGTTCAGAACAAATTTCTAAACCATACACTTCTGTTTCAGTGGTTTTA
TTTTGTTGAAATGGCTAAAATGTCAGAATAATAAGCTACATAAAATGTTAAAAAATTTGG
GGATAGCTTTCCTGCTGTACGTTGTGTTGGATCCTGTTGCCCAGGTAAGATTACTTAAAA
AAATTTTTTTGCTCTTTTTTTTGTAAATTATAAGAATATGAAGCCATAAAATGACAAGAT
GTTTAGGTTTAAAAAGTTTTAAACTAGTAAGTTTTAAACTAGTAGACTTACAGCCTAATT
CTTTAGACTGGTCCTTAATAGCAGTTCCTTTTCATACTATTGATAAACAGAATTTCGATG
TAAGACAAAACAAAACTTGCCAAAGCCAAATGTAGTATCTTTTGGTTTTAATCACCTTTT
CCATCATATATGCTACTTCTATGTGTTTTCACATGATATTCTAATATATATTGCATTAAA
AATAAAAAGCTCTGAGTGAGCTCTTTTGTTACCCATTTATTCCTAAATTTTTGAAAGCTT
TTTGTAGTCAGCTCTTTAAAATAAGTTAGTTTAACTTCATTACTCGGTTGTTTAAAGTTG
ATAAATGATGATGAAAGTTCCTTTAAGGCAATGGTGATAGATGTTACAGATCTTTTATCC
CTTAAACATAAGCTTTGAAAATGTTAACTACATATTTTAAATACTGTTACATGAATATCA
AAATGTGATGTGTCAGAAATAAAGGGATGTTTTAAAGGTGGATATTTGAAAATTCTTTAG
TCTTAGTGTTTGTGTATTGAATAGTATATTGTAAAACTAAGTGTGTAATTTGCTAGTACA
ATACAGTGGTTAGCATTAGGTATGTCTCCTCTCTGTATCCTAGCTATGTTCCATTTACTT
GTAAGTGCAGTCCTTTCACGTTCACTTGCTACTTTACCCCCCACCTAATCTAACTTAATA
TAGAAAGCTTGTCTAGAGAGTATTGTATGTATTTTTATTTTTGCAGTGACTTGCATGTGC
TAATCCTAACCATAGCTATTGTTTTTATGTTGACATAACTCTAAATGTTCTCTTATGTAT
CAGCTCTAATCCTTTAAGTAAATTTAATAAATTCATATTCAAATTTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATGTCTTTGGTAACCTATCCTCATCCCTCATAAAAGCATGATGTTGAATAACTGTTG
GAAAACTTCAAACCCATTAAAATCTAAAAGTTTAATTCTTTTTTTAACATGGATCATTCA
GCACTGGGAAATAGACCCAACATGTGAGTAGGAGCAAAGGAAAAAGCAGAATCATTCACA
TGTTTTGTGTTCACATCTGTTCTCTACCTACCTGTTCATTTAATTTCAACCTTTTTATTT
GATAAGAGATTTTTTTTAATATATGAAGTCATCTAACGACCTCATTAATGAAGTTGAAAT
ATATTTTCAAAGTCCAAATTTAAATTGCAGCATCTAAAAATAGCTGTGTAAGTGGAAATC
AAATTTTAAAAGATATCTTTTTTCTACACGTAGTTAAGTAGTTAAAATCATGACATAAAT
TTAGAAACTACTCAGAATAATTATATAGAATTTCCTCAAATATTTGTTAACTGGCACGTG
TTGACCAAGTAAATCCAACTTGAAAGTTCTTCCTCTGTTCCATTGTATCCCACGGCAGTC
TCCTCTGTTTGGTGTTCAGAACAAATTTCTAAACCATACACTTCTGTTTCAGTGGTTTTA
TTTTGTTGAAATGGCTAAAATGTCAGAATAATAAGCTACATAAAATGTTAAAAAATTTGG
GGATAGCTTTCCTGCTGTACGTTGTGTTGGATCCTGTTGCCCAGGTAAGATTACTTAAAA
AAATTTTTTTGCTCTTTTTTTTGTAAATTATAAGAATATGAAGCCATAAAATGACAAGAT
GTTTAGGTTTAAAAAGTTTTAAACTAGTAAGTTTTAAACTAGTAGACTTACAGCCTAATT
CTTTAGACTGGTCCTTAATAGCAGTTCCTTTTCATACTATTGATAAACAGAATTTCGATG
TAAGACAAAACAAAACTTGCCAAAGCCAAATGTAGTATCTTTTGGTTTTAATCACCTTTT
CCATCATATATGCTACTTCTATGTGTTTTCACATGATATTCTAATATATATTGCATTAAA
AATAAAAAGCTCTGAGTGAGCTCTTTTGTTACCCATTTATTCCTAAATTTTTGAAAGCTT
TTTGTAGTCAGCTCTTTAAAATAAGTTAGTTTAACTTCATTACTCGGTTGTTTAAAGTTG
ATAAATGATGATGAAAGTTCCTTTAAGGCAATGGTGATAGATGTTACAGATCTTTTATCC
CTTAAACATAAGCTTTGAAAATGTTAACTACATATTTTAAATACTGTTACATGAATATCA
AAATGTGATGTGTCAGAAATAAAGGGATGTTTTAAAGGTGGATATTTGAAAATTCTTTAG
TCTTAGTGTTTGTGTATTGAATAGTATATTGTAAAACTAAGTGTGTAATTTGCTAGTACA
ATACAGTGGTTAGCATTAGGTATGTCTCCTCTCTGTATCCTAGCTATGTTCCATTTACTT
GTAAGTGCAGTCCTTTCACGTTCACTTGCTACTTTACCCCCCACCTAATCTAACTTAATA
TAGAAAGCTTGTCTAGAGAGTATTGTATGTATTTTTATTTTTGCAGTGACTTGCATGTGC
TAATCCTAACCATAGCTATTGTTTTTATGTTGACATAACTCTAAATGTTCTCTTATGTAT
CAGCTCTAATCCTTTAAGTAAATTTAATAAATTCATATTCAAATTTTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1228-1343, - strand, RNAz p=0.720826

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1228-1343, - strand, RNAz p=0.720826

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1667, gnl|bosTau2|chr20 (13344882-13346539)
               

               
               1-1667, gnl|Hg17|chr5 (55270028-55268229)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1667, gnl|bosTau2|chr20 (13344882-13346539)
               

               
               1-1667, gnl|Hg17|chr5 (55270028-55268229)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

Help | Less info


               
               ret (1.67353)
               

               
               aor (1.36692)
               

               
               mgp (1.1534)
               

               
               kid (1.03788)
               

               
               tra (0.861645)
               

               
               sag (0.730861)
               

               
               vin (0.665115)
               

               
               fco (0.628832)
               

               
               liv (0.585137)
               

               
               mga (0.480615)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               nmm (0.398406)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.67353)
               

               
               aor (1.36692)
               

               
               mgp (1.1534)
               

               
               kid (1.03788)
               

               
               tra (0.861645)
               

               
               sag (0.730861)
               

               
               vin (0.665115)
               

               
               fco (0.628832)
               

               
               liv (0.585137)
               

               
               mga (0.480615)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               nmm (0.398406)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

	1-1667, gnl\|bosTau2\|chr20 (13344882-13346539)
	1-1667, gnl\|Hg17\|chr5 (55270028-55268229)

	ret (1.67353)
	aor (1.36692)
	mgp (1.1534)
	kid (1.03788)
	tra (0.861645)
	sag (0.730861)
	vin (0.665115)
	fco (0.628832)
	liv (0.585137)
	mga (0.480615)
	fat (0.442282)
	lin (0.436808)
	nmm (0.398406)
	cty (0.31224)
	bfe (0.299715)
	fce (0.271592)
	clu (0.239292)
	jca (0.22792)
	hea (0.204499)
	gul (0.177588)
	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	pty (0.142714)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	sug (0.127291)
	thg (0.126791)
	cbl (0.114797)