Non-Coding RNA Search

Ss1.1-Pig4-TMW8052D10.3

Sequence:


               
               TTTAAAACGCGCTGCCCAACGTGAGTGATGGAAGTTAGGCTGACCTACTGGTTTTCCCGG
AAGACTTTGTGGTGGTGCTTCCTGATCCTGTTACTTCTCCACAGGACGGTTTGGTTTGCT
GGGCCTGGCTCCTGGGGACGTGAGGCAGCATTGCCTGGTGTCACAAGCCCTGGTTCTGGA
GCCCTCTGTTGATGAGGGACTCGCCAAAATTACTTAAACAAACAAACAAAGGAACAAACA
CTAACCAAAACTGGAGCCCAAAACCCACAAGGAAAAGGCCTGAGAGCAAAGTAGACTTCA
GTAAATAAAGGGAGATAATCAAGTGAATTTGAAGAACCGTATCCTCAGAGTTCATGAAAA
GCCACATGGATGGGAAACAGTATTTCAGCCCGAAGTTCTCTAAATACAACTGGCTCAGGC
TGATTAGCCTCGAATTGCTTTCCTTACTGAACTCTCAGGGTCCTTTGCTTCCCGAAGGCT
CTGGATGGCAGGAGTGGGGATGCTGGGGAGACTATTTCTGTAAGATTTAAGTTGGAGGGA
GGCGGGGGCTGAGAAAGGAGGAATCAGATAAGTCCACTGGGTTGCAAAGAAGCTATTCTA
ACAAGCTCCTCACAATGGGCTTGAAAGCTCAATAAATGTTTTGTCCTCTTGTAAATATAC
CATTGTATGAGGAATTCGACTCAACATCTGGAATTCAGGATCCATCCCAAATTAAAGAAT
GTAAAATCTTTCCCAGCAGAAGAATGCTACTTGTGGCCAATTTCATGGGTTCTTACTACA
TGGTTAATTATGACCTGTGGCCCATTACCACATATTCTTGGTACAAGTGAATCTGTTCTT
TGCTTTGTTTGACTCCAATAAAAATCCAAAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAAACGCGCTGCCCAACGTGAGTGATGGAAGTTAGGCTGACCTACTGGTTTTCCCGG
AAGACTTTGTGGTGGTGCTTCCTGATCCTGTTACTTCTCCACAGGACGGTTTGGTTTGCT
GGGCCTGGCTCCTGGGGACGTGAGGCAGCATTGCCTGGTGTCACAAGCCCTGGTTCTGGA
GCCCTCTGTTGATGAGGGACTCGCCAAAATTACTTAAACAAACAAACAAAGGAACAAACA
CTAACCAAAACTGGAGCCCAAAACCCACAAGGAAAAGGCCTGAGAGCAAAGTAGACTTCA
GTAAATAAAGGGAGATAATCAAGTGAATTTGAAGAACCGTATCCTCAGAGTTCATGAAAA
GCCACATGGATGGGAAACAGTATTTCAGCCCGAAGTTCTCTAAATACAACTGGCTCAGGC
TGATTAGCCTCGAATTGCTTTCCTTACTGAACTCTCAGGGTCCTTTGCTTCCCGAAGGCT
CTGGATGGCAGGAGTGGGGATGCTGGGGAGACTATTTCTGTAAGATTTAAGTTGGAGGGA
GGCGGGGGCTGAGAAAGGAGGAATCAGATAAGTCCACTGGGTTGCAAAGAAGCTATTCTA
ACAAGCTCCTCACAATGGGCTTGAAAGCTCAATAAATGTTTTGTCCTCTTGTAAATATAC
CATTGTATGAGGAATTCGACTCAACATCTGGAATTCAGGATCCATCCCAAATTAAAGAAT
GTAAAATCTTTCCCAGCAGAAGAATGCTACTTGTGGCCAATTTCATGGGTTCTTACTACA
TGGTTAATTATGACCTGTGGCCCATTACCACATATTCTTGGTACAAGTGAATCTGTTCTT
TGCTTTGTTTGACTCCAATAAAAATCCAAAGAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-876, gnl|bosTau2|chr18 (32578644-32577752)
               

               
               1-876, gnl|Hg17|chr16 (70226213-70227602)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr18 (32578644-32577752)
               

               
               1-876, gnl|Hg17|chr16 (70226213-70227602)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               csk (0.281492)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               ute (0.132784)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               ute (0.132784)

	1-876, gnl\|bosTau2\|chr18 (32578644-32577752)
	1-876, gnl\|Hg17\|chr16 (70226213-70227602)

	csk (0.281492)
	rec (0.17307)
	cki (0.165235)
	lun (0.150489)
	ski (0.146735)
	ute (0.132784)