Ss1.1-Pig4-TMW8052D22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCAAAGAATTTGATGGAACAAAAATATTTCTTGGAAATGGGATTTCTGAACTAAGCCG CAAAGAAATCTTCAGCGGGCTACCTGATCTTAAAGGCATAGGCATAAGAATGACGGAACC AGTGTATCTCAGCCCTTCATTTGACGATGTACTGCCTGGCTACTTATTTTTACAGAATTT GCCTTCTGCCGTAGTAACACATGTTCTGGATCCTCAACCTGGAGAAAGGATTCTGGATTT GTGTGCAGCACCTGGAGGCAAAACAACACACATTGCAGCACGAATGCGTGATCAGGGAGA AGTGATAGCACTGGATAAAATAGCCAACAAAGTAGAAAAAATAAAGCAGAATGCATTATT ACTAGGCCTGAATTCCATCAGGGCATTTTGCTTTGATGGAACAAAGGCCCTCAAACTTGA TATAGACACAGAAGGAGAACCTCCATTCTTACCCGAATCTTTTGACCGAATTCTGCTTGA TGCCCCCTGCAGTGGAATGGGACAGAGACCAAACATGGCTTGTACTTGGACTTTGAAGGA AGTGACATCATACCAACCATTACAGAGAAAACTCTTTACTGTGGCAGTTGAGCTGCTGAA GCCGGGGGGCGTGCTGGTTTACAGCACATGCACCGTCACGCTGGCAGAAAATGAAGAACA AGTTGCCTGGGCCCTGGGAACATTTCCCTGCCTTCAGCTGCAGCGCCAGGACCCTCAGAT CGGAGGAGCAGGGATGATGGGAGCTGGCCTGACGTCTGAACAGTTGAAACAGCTGCAGCG ATTCGATCCGTCCGTGGTGCCATCATGGGACACTGACATTGATTCTCTCAGAGACACCAG AACAGAAGACATGATCCGGCTGGCAAATCAGGACTGTATAGGTTTCTTCATTGCAAAATT TGTAAAAGGCAAAAACACAAAGGTGAAGGCGCCGTAGAAGTGAAAATTCCAAACATTTGC TGTGCACTGTTTTTTTTTCCCCTTAATTTAAATCAAACTGTCATCAGGCCACGTGATTGA TGACGTGGTTGCTAAGGAAATGGAAAAGGCTGCCAGCTGTTCCACCAGGAACCCAGGGAC TTGATCAAGAGACTCTGCTTCATAGAGGACATAGCCAGGGGGCGATTTGATATTCTATTT CTTGTTTTTAAAATAATTTTTTTCTTCATGGATTTAGCAGAGTATAAAGAAGGCAGTATG AAGAAAAGGGGATGCCTATAAATGTCTGGAACATACTTTCACTTGGGGTCTTTTAATTTG TAAAGAGTACAAATCATTTTTAATGTTAAAATCAGTGGATTTAACATAAGGAATAAAATC TGCAATATTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCAAAGAATTTGATGGAACAAAAATATTTCTTGGAAATGGGATTTCTGAACTAAGCCG CAAAGAAATCTTCAGCGGGCTACCTGATCTTAAAGGCATAGGCATAAGAATGACGGAACC AGTGTATCTCAGCCCTTCATTTGACGATGTACTGCCTGGCTACTTATTTTTACAGAATTT GCCTTCTGCCGTAGTAACACATGTTCTGGATCCTCAACCTGGAGAAAGGATTCTGGATTT GTGTGCAGCACCTGGAGGCAAAACAACACACATTGCAGCACGAATGCGTGATCAGGGAGA AGTGATAGCACTGGATAAAATAGCCAACAAAGTAGAAAAAATAAAGCAGAATGCATTATT ACTAGGCCTGAATTCCATCAGGGCATTTTGCTTTGATGGAACAAAGGCCCTCAAACTTGA TATAGACACAGAAGGAGAACCTCCATTCTTACCCGAATCTTTTGACCGAATTCTGCTTGA TGCCCCCTGCAGTGGAATGGGACAGAGACCAAACATGGCTTGTACTTGGACTTTGAAGGA AGTGACATCATACCAACCATTACAGAGAAAACTCTTTACTGTGGCAGTTGAGCTGCTGAA GCCGGGGGGCGTGCTGGTTTACAGCACATGCACCGTCACGCTGGCAGAAAATGAAGAACA AGTTGCCTGGGCCCTGGGAACATTTCCCTGCCTTCAGCTGCAGCGCCAGGACCCTCAGAT CGGAGGAGCAGGGATGATGGGAGCTGGCCTGACGTCTGAACAGTTGAAACAGCTGCAGCG ATTCGATCCGTCCGTGGTGCCATCATGGGACACTGACATTGATTCTCTCAGAGACACCAG AACAGAAGACATGATCCGGCTGGCAAATCAGGACTGTATAGGTTTCTTCATTGCAAAATT TGTAAAAGGCAAAAACACAAAGGTGAAGGCGCCGTAGAAGTGAAAATTCCAAACATTTGC TGTGCACTGTTTTTTTTTCCCCTTAATTTAAATCAAACTGTCATCAGGCCACGTGATTGA TGACGTGGTTGCTAAGGAAATGGAAAAGGCTGCCAGCTGTTCCACCAGGAACCCAGGGAC TTGATCAAGAGACTCTGCTTCATAGAGGACATAGCCAGGGGGCGATTTGATATTCTATTT CTTGTTTTTAAAATAATTTTTTTCTTCATGGATTTAGCAGAGTATAAAGAAGGCAGTATG AAGAAAAGGGGATGCCTATAAATGTCTGGAACATACTTTCACTTGGGGTCTTTTAATTTG TAAAGAGTACAAATCATTTTTAATGTTAAAATCAGTGGATTTAACATAAGGAATAAAATC TGCAATATTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 294-423, + strand, RNAz p=0.900072 | |
| 294-423, - strand, RNAz p=0.900072 | |
| 294-389, + strand, RNAz p=0.927338 | |
| 294-389, - strand, RNAz p=0.927338 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 294-423, + strand, RNAz p=0.900072 | |
| 294-423, - strand, RNAz p=0.900072 | |
| 294-389, + strand, RNAz p=0.927338 | |
| 294-389, - strand, RNAz p=0.927338 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 294-423, gnl|bosTau2|chr13 (20560194-20560323) | |
| 294-423, gnl|canFam2|chr2 (21347596-21347442) | |
| 294-423, gnl|dasNov1|scaffold_90264 (937-1085) | |
| 294-423, gnl|echTel1|scaffold_320558 (1916-2070) | |
| 294-423, gnl|galGal2|chr2 (18411794-18411640) | |
| 294-423, gnl|hg17|chr10 (18914877-18915031) | |
| 294-423, gnl|Hg17|chr10 (18915030-18914901) | |
| 294-423, gnl|mm7|chr2 (14962554-14962708) | |
| 294-423, gnl|Mm7|chr2 (14962707-14962578) | |
| 294-423, gnl|monDom2|scaffold_7 (51038522-51038374) | |
| 294-423, gnl|oryCun1|scaffold_99258 (4314-4160) | |
| 294-423, gnl|panTro1|chr8 (19218250-19218404) | |
| 294-423, gnl|rheMac2|chr9 (18905530-18905684) | |
| 294-423, gnl|rn3|chr17 (89103469-89103623) | |
| 294-423, gnl|tetNig1|chr6 (4331515-4331364) | |
| 294-423, gnl|xenTro1|scaffold_1353 (95873-96031) | |
| 433-597, gnl|bosTau2|chr13 (20574507-20574672) | |
| 433-597, gnl|canFam2|chr2 (21362444-21362267) | |
| 433-597, gnl|danRer3|chr2 (9157306-9157156) | |
| 433-597, gnl|dasNov1|scaffold_165888 (4767-4592) | |
| 433-597, gnl|fr1|chrUn (216231293-216231116) | |
| 433-597, gnl|galGal2|chr2 (18413646-18413468) | |
| 433-597, gnl|hg17|chr10 (18880729-18880906) | |
| 433-597, gnl|Hg17|chr10 (18880908-18880743) | |
| 433-597, gnl|loxAfr1|scaffold_2515 (101566-101389) | |
| 433-597, gnl|mm7|chr2 (14958804-14958979) | |
| 433-597, gnl|Mm7|chr2 (14958981-14958816) | |
| 433-597, gnl|monDom2|scaffold_7 (51041994-51041822) | |
| 433-597, gnl|oryCun1|scaffold_92204 (1216-1391) | |
| 433-597, gnl|panTro1|chr8 (19185236-19185412) | |
| 433-597, gnl|rheMac2|chr9 (18851686-18851863) | |
| 433-597, gnl|rn3|chr17 (89100481-89100655) | |
| 433-597, gnl|tetNig1|chr6 (4331753-4331589) | |
| 433-597, gnl|xenTro1|scaffold_1353 (86268-86418) | |
| 707-1332, gnl|bosTau2|chr13 (20583512-20584129) | |
| 707-1332, gnl|Hg17|chr10 (18875083-18874496) | |
| 707-1332, gnl|Mm7|chr2 (14945969-14945403) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 294-423, gnl|bosTau2|chr13 (20560194-20560323) | |
| 294-423, gnl|canFam2|chr2 (21347596-21347442) | |
| 294-423, gnl|dasNov1|scaffold_90264 (937-1085) | |
| 294-423, gnl|echTel1|scaffold_320558 (1916-2070) | |
| 294-423, gnl|galGal2|chr2 (18411794-18411640) | |
| 294-423, gnl|hg17|chr10 (18914877-18915031) | |
| 294-423, gnl|Hg17|chr10 (18915030-18914901) | |
| 294-423, gnl|mm7|chr2 (14962554-14962708) | |
| 294-423, gnl|Mm7|chr2 (14962707-14962578) | |
| 294-423, gnl|monDom2|scaffold_7 (51038522-51038374) | |
| 294-423, gnl|oryCun1|scaffold_99258 (4314-4160) | |
| 294-423, gnl|panTro1|chr8 (19218250-19218404) | |
| 294-423, gnl|rheMac2|chr9 (18905530-18905684) | |
| 294-423, gnl|rn3|chr17 (89103469-89103623) | |
| 294-423, gnl|tetNig1|chr6 (4331515-4331364) | |
| 294-423, gnl|xenTro1|scaffold_1353 (95873-96031) | |
| 433-597, gnl|bosTau2|chr13 (20574507-20574672) | |
| 433-597, gnl|canFam2|chr2 (21362444-21362267) | |
| 433-597, gnl|danRer3|chr2 (9157306-9157156) | |
| 433-597, gnl|dasNov1|scaffold_165888 (4767-4592) | |
| 433-597, gnl|fr1|chrUn (216231293-216231116) | |
| 433-597, gnl|galGal2|chr2 (18413646-18413468) | |
| 433-597, gnl|hg17|chr10 (18880729-18880906) | |
| 433-597, gnl|Hg17|chr10 (18880908-18880743) | |
| 433-597, gnl|loxAfr1|scaffold_2515 (101566-101389) | |
| 433-597, gnl|mm7|chr2 (14958804-14958979) | |
| 433-597, gnl|Mm7|chr2 (14958981-14958816) | |
| 433-597, gnl|monDom2|scaffold_7 (51041994-51041822) | |
| 433-597, gnl|oryCun1|scaffold_92204 (1216-1391) | |
| 433-597, gnl|panTro1|chr8 (19185236-19185412) | |
| 433-597, gnl|rheMac2|chr9 (18851686-18851863) | |
| 433-597, gnl|rn3|chr17 (89100481-89100655) | |
| 433-597, gnl|tetNig1|chr6 (4331753-4331589) | |
| 433-597, gnl|xenTro1|scaffold_1353 (86268-86418) | |
| 707-1332, gnl|bosTau2|chr13 (20583512-20584129) | |
| 707-1332, gnl|Hg17|chr10 (18875083-18874496) | |
| 707-1332, gnl|Mm7|chr2 (14945969-14945403) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pro (0.512033) | |
| ill (0.175593) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| ill (0.175593) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) |