Non-Coding RNA Search

Ss1.1-Pig4-TMW8052E01.5

Sequence:


               
               ACGACGACGAGCTCACCTTCATGGAGGGCGAGGTGATCGTGGTCACGGGGGAGGAGGACC
AGGAGTGGTGGATCGGACACATCGAAGGGCAGCCCGAGAGGAAGGGGGTCTTTCCAGTGT
CCTTCGTCCACATCCTGTCCGACTAGCACCAGGCAGAACCTTGAGATTGTCCGCCTCCGT
CATGCCAGACTGCTGCGTCCACTCCCCCTGCGCACACCGTGTATATAGCTGCTGTTACTG
AACAGGGAGCTCGGAGGGGCCGCCTCAGGAGGGAACAGAGCGTGTGCTGTAAATACCTGT
GGTCTTCTGCCTTCGCCAGTATTAGGGTAGCCTTGGGACCCGGTGCGCCTTACTGGTCTG
CCAAAGCCATCCTTGGCATCTAGCACGTACATCTCTCTCCTTGCTGTTTTCCAAGCAAAC
CAACAAAAACAGGAATATAGGAACTGCTGGCTTTGCAAGTAGAAGTGGTCTCCAGCCACC
GTCGAAGGGCATAGCATTGACTCCCTGTCCCTCACAATGCAGTATTCTCCATTGTGTTAC
TGAAAATGCAACATTAGCCAAGAGGTGGGTTCTGTTTTCCAGGTGAGACGTTTTGCTCCA
CGACAGACCAGCCTGTAGTTATCTGTGTACACAGTTTACAGCTCCAAAAACCTCCTTCGG
TATTTATTACAGAAAAGTGCTCAGTTAAATGTAAGTGTTACTCCTTCAGCAAAATCTCCA
CTGACCCAAAACCTTGGTGGCATTTTGCAGTGCCCACAGCCTCGTGCAAGGTCAGACAAG
TGGGTTTATACTGTCTTAAGAGGATGAGTGCCCGCCCCTGAGATATTACCTCATTATGCA
AAAATAACATATCCTTCATAACTATTTTCACAGAAGTTTAAAACACATCTGATGAAGTTC
AACTTTCAGGAACCAAGGACTGCCAGAAACTGTTAGCCTCTACATTATGCATGCATTTAG
AAGCTTACCTGAAATCTGCCTTTTATAAAGGAATAGTGTGGTTAAGTTGAACTGTACTTT
TTTAAACTCGATTGCCATTAAAGCAGAAATTATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGACGACGAGCTCACCTTCATGGAGGGCGAGGTGATCGTGGTCACGGGGGAGGAGGACC
AGGAGTGGTGGATCGGACACATCGAAGGGCAGCCCGAGAGGAAGGGGGTCTTTCCAGTGT
CCTTCGTCCACATCCTGTCCGACTAGCACCAGGCAGAACCTTGAGATTGTCCGCCTCCGT
CATGCCAGACTGCTGCGTCCACTCCCCCTGCGCACACCGTGTATATAGCTGCTGTTACTG
AACAGGGAGCTCGGAGGGGCCGCCTCAGGAGGGAACAGAGCGTGTGCTGTAAATACCTGT
GGTCTTCTGCCTTCGCCAGTATTAGGGTAGCCTTGGGACCCGGTGCGCCTTACTGGTCTG
CCAAAGCCATCCTTGGCATCTAGCACGTACATCTCTCTCCTTGCTGTTTTCCAAGCAAAC
CAACAAAAACAGGAATATAGGAACTGCTGGCTTTGCAAGTAGAAGTGGTCTCCAGCCACC
GTCGAAGGGCATAGCATTGACTCCCTGTCCCTCACAATGCAGTATTCTCCATTGTGTTAC
TGAAAATGCAACATTAGCCAAGAGGTGGGTTCTGTTTTCCAGGTGAGACGTTTTGCTCCA
CGACAGACCAGCCTGTAGTTATCTGTGTACACAGTTTACAGCTCCAAAAACCTCCTTCGG
TATTTATTACAGAAAAGTGCTCAGTTAAATGTAAGTGTTACTCCTTCAGCAAAATCTCCA
CTGACCCAAAACCTTGGTGGCATTTTGCAGTGCCCACAGCCTCGTGCAAGGTCAGACAAG
TGGGTTTATACTGTCTTAAGAGGATGAGTGCCCGCCCCTGAGATATTACCTCATTATGCA
AAAATAACATATCCTTCATAACTATTTTCACAGAAGTTTAAAACACATCTGATGAAGTTC
AACTTTCAGGAACCAAGGACTGCCAGAAACTGTTAGCCTCTACATTATGCATGCATTTAG
AAGCTTACCTGAAATCTGCCTTTTATAAAGGAATAGTGTGGTTAAGTTGAACTGTACTTT
TTTAAACTCGATTGCCATTAAAGCAGAAATTATAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-458, - strand, RNAz p=0.580181

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-458, - strand, RNAz p=0.580181

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               71-1056, gnl|bosTau2|chr14 (6116330-6117322)
               

               
               71-1056, gnl|Hg17|chr8 (131136234-131135256)
               

               
               71-1056, gnl|Mm7|chr15 (64165130-64164154)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-1056, gnl|bosTau2|chr14 (6116330-6117322)
               

               
               71-1056, gnl|Hg17|chr8 (131136234-131135256)
               

               
               71-1056, gnl|Mm7|chr15 (64165130-64164154)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbe (0.239234)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	71-1056, gnl\|bosTau2\|chr14 (6116330-6117322)
	71-1056, gnl\|Hg17\|chr8 (131136234-131135256)
	71-1056, gnl\|Mm7\|chr15 (64165130-64164154)

	cbe (0.239234)
	ill (0.175593)
	rec (0.17307)
	mcp (0.170648)
	nco (0.161734)
	mga (0.160205)
	pty (0.142714)
	tra (0.123092)
	clu (0.119646)
	spc (0.113366)
	jej (0.0989218)