Non-Coding RNA Search

Ss1.1-Pig4-TMW8052E02.5

Sequence:


               
               GGTCCCGCAGCCGCAGACAGGAGCGCTAGTGGAAGCCGAGGCGGAAGCGTCATGTCTGAG
CCGCCCCCGCGGGGGGCCGAGCGCGACCTTTTCCGGGACACGTGGGTGCGGTACTTGGGC
TATGCCAATGAGGTAGGGGAGGCCTTCCGCTCCTTGGTGCCAACAGCTGTTGTGTGGCTG
AGCTATGGTGTGTCCAGCTCCTATGTGCTGGCTGATGCCATTGACAAAGGCAAGAAGGCA
AGAGATGTGCCAAGCCCTGAGGCAGGCCGCAGCACCAGGGTGACCGTGGCCGTGGTAGAC
ACCTTTGTGTGGCAGGCTCTGGCCTCTGTGGCCATCCCAGGCTTCACTATCAACCGTGTG
TGTGCTGCCTCTCTCTACATCCTGGGCACTGCCACCCGCTGGCCTCTGGCTGTCCGCAAG
TGGACCACTACTGCACTGGGGCTACTGGCCATCCCCATCATCATCCACCCCATCGACAGG
TCAGTGGACTTCCTCCTGGACTCCAGCCTCCGCAAGCTCTACCCCTCAGTGGAGAAGCCC
AGCTCCTCCTGACTCCACCCTGGTACCTGGCCTGTGGGTTTGCCTATTCCCTGTTCCACC
TCCTTCTTCCTGCCAGGGGAAGTGGACACCTAGTTGCCTAGGGTCCGAGGCCCTGACACC
TGAGTAGGTTTAAGTTGAACGGAAACTGAGAGATAATGACCTCAGAGCAGAAGCTGCAAC
GACTCATAGACAGGACCTGAACCCCATCTGCTTCCATGGAATCTGTGATACTGAGCCATA
ATGGATGCCGGGTGGCCCCAGCCCTATCTTTTGACAGGAAAGTAACATCCTCCCATGGAG
GGTAGGGAAACTGAGGTGCAGACAAGGCAAGGAATATGGCCAAGATCACCCAAGCTGGGA
CCCAGGCCTCCCAATGGCTCAGCTGGGCCAGTGCATGGCAGTGCGGCTGACAGAAACACA
GGAGTGCAGAAGCGGGGACCCTGAGAAGTGATTCGCTGTCTGCCCCTCCTGGTGCAGGGG
CTGTCAGGGCTTGGCTGGCAATAAATCCTCAAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCCGCAGCCGCAGACAGGAGCGCTAGTGGAAGCCGAGGCGGAAGCGTCATGTCTGAG
CCGCCCCCGCGGGGGGCCGAGCGCGACCTTTTCCGGGACACGTGGGTGCGGTACTTGGGC
TATGCCAATGAGGTAGGGGAGGCCTTCCGCTCCTTGGTGCCAACAGCTGTTGTGTGGCTG
AGCTATGGTGTGTCCAGCTCCTATGTGCTGGCTGATGCCATTGACAAAGGCAAGAAGGCA
AGAGATGTGCCAAGCCCTGAGGCAGGCCGCAGCACCAGGGTGACCGTGGCCGTGGTAGAC
ACCTTTGTGTGGCAGGCTCTGGCCTCTGTGGCCATCCCAGGCTTCACTATCAACCGTGTG
TGTGCTGCCTCTCTCTACATCCTGGGCACTGCCACCCGCTGGCCTCTGGCTGTCCGCAAG
TGGACCACTACTGCACTGGGGCTACTGGCCATCCCCATCATCATCCACCCCATCGACAGG
TCAGTGGACTTCCTCCTGGACTCCAGCCTCCGCAAGCTCTACCCCTCAGTGGAGAAGCCC
AGCTCCTCCTGACTCCACCCTGGTACCTGGCCTGTGGGTTTGCCTATTCCCTGTTCCACC
TCCTTCTTCCTGCCAGGGGAAGTGGACACCTAGTTGCCTAGGGTCCGAGGCCCTGACACC
TGAGTAGGTTTAAGTTGAACGGAAACTGAGAGATAATGACCTCAGAGCAGAAGCTGCAAC
GACTCATAGACAGGACCTGAACCCCATCTGCTTCCATGGAATCTGTGATACTGAGCCATA
ATGGATGCCGGGTGGCCCCAGCCCTATCTTTTGACAGGAAAGTAACATCCTCCCATGGAG
GGTAGGGAAACTGAGGTGCAGACAAGGCAAGGAATATGGCCAAGATCACCCAAGCTGGGA
CCCAGGCCTCCCAATGGCTCAGCTGGGCCAGTGCATGGCAGTGCGGCTGACAGAAACACA
GGAGTGCAGAAGCGGGGACCCTGAGAAGTGATTCGCTGTCTGCCCCTCCTGGTGCAGGGG
CTGTCAGGGCTTGGCTGGCAATAAATCCTCAAGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826973|ref|XP_603414.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826973|ref|XP_603414.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               132-249, + strand, RNAz p=0.668158
               

               
               555-705, - strand, RNAz p=0.946477

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-249, + strand, RNAz p=0.668158
               

               
               555-705, - strand, RNAz p=0.946477

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               118-249, gnl|bosTau2|chr17 (42640400-42640531)
               

               
               118-249, gnl|Hg17|chr22 (29147258-29147389)
               

               
               118-249, gnl|Mm7|chr11 (4046520-4046389)
               


               
               476-1038, gnl|bosTau2|chr17 (42642183-42642756)
               

               
               476-1038, gnl|Hg17|chr22 (29148999-29149574)
               

               
               476-1038, gnl|Mm7|chr11 (4044306-4043538)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-249, gnl|bosTau2|chr17 (42640400-42640531)
               

               
               118-249, gnl|Hg17|chr22 (29147258-29147389)
               

               
               118-249, gnl|Mm7|chr11 (4046520-4046389)
               


               
               476-1038, gnl|bosTau2|chr17 (42642183-42642756)
               

               
               476-1038, gnl|Hg17|chr22 (29148999-29149574)
               

               
               476-1038, gnl|Mm7|chr11 (4044306-4043538)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	132-249, + strand, RNAz p=0.668158
	555-705, - strand, RNAz p=0.946477

	118-249, gnl\|bosTau2\|chr17 (42640400-42640531)
	118-249, gnl\|Hg17\|chr22 (29147258-29147389)
	118-249, gnl\|Mm7\|chr11 (4046520-4046389)

	476-1038, gnl\|bosTau2\|chr17 (42642183-42642756)
	476-1038, gnl\|Hg17\|chr22 (29148999-29149574)
	476-1038, gnl\|Mm7\|chr11 (4044306-4043538)

	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	hyp (0.142837)
	nmm (0.132802)
	ute (0.132784)
	eru (0.120048)
	eje (0.0988338)