Non-Coding RNA Search

Ss1.1-Pig4-TMW8052E04.3

Sequence:


               
               AAACTGTTTTTTACAAAATTTCTCCCTGGATTAGCCATTTTAAATGAAACGGAATTCATC
AATTAAAGGAGTATATAAAATCAGGATTTGCCTTAATATGTGAGTTCAGCTCAGAAGCAT
TTTAAGATAATTGGGAAAACTTGAATTAAAGAAAAAATTAACTTCAATGACTTTTTTTAA
AAGTATAGTTAAAATATTTTTTAACACATTTCACGTAGGGGTCAGTCTGTTTAACTGCAC
CGTTGATGCTTAAGTTGTCCCTTTGCTCTGTGCCTGTGTCAGGTCTTGAAATCTTCTTGG
CAATACCTTTGAATACAATTAATTTTTCACAGTTATGTTGGTTCTTTTGTTATGCCTCTT
TTTAGCTGGAGAACCAAGAAGCAAACTATCACTTTTTAAAAAAAGAATCATTCCTCTCTT
GACTGTTTCTCTCCTTTATACTCAAAAAGAGGTGAGATTAATAGATTATTTTCAAATGAC
CGTCTCTGTCACTGGAAAAAGTGGTCTTATTTGAATCTTTATTCTGGTCTCTTTTGAGAG
GGGAACTCTTCCAGTGAAGTAGCTTTGCAAAATTTTGATGCATTGAATGGCTGAACATAG
GGGGTATATTAAGTCATTTTAAGGCATTAAGTGGATGGATGTATGGGTATTTGCAGAATT
TCAGGGATAATTTCTCTTTTGGATACGACAAAACCTTTATAATAGATGTCCGAGGTCAAT
TTGCGTTTATTGTTGTGGGCTAGATTTGCCTGTCTCAAGCCAGGAAAATCCAATTGGCAT
TTATCTTCCACTTTCGGGGCTGGAGCCGAACAAGAGAAGGTTAGTTGAAACTGGAAAATG
TGGAGCCCATCTAGGAGTCTCTGTTGACTCAGACAGGGGGCAGAGAGCCTTTGTGTTCAG
TAGTTGCAGTTCTAGAGATAGGAGGACTTGATGAACCTTCCTGATTCTCCTTTATTTTAA
ACTATTTGTGGAAGGGCTAAGGTAGAAGGAGAATAGATCCCTTTCGGTTAGAACGAGAGC
TGGGCAGAATGCCATACCACAGCTGCTGCACCCCCCGATTCAACCAGCTGCAGATCCAAA
ATAACCAGGACAGAAAACTCCAGAGATTTCTAAAAAGCAAAATTTGAATTTGCCAAGCAC
TGGCAACTGTTGCCATAGTAGCATTTACATGTTGCACAGCACTTGCCCTGGATTGGGTGT
TGTAAGTAATCTAGCGAGGATGTAAAGCACAGGCAGGGGTGTGCGTGTGAAATACTGCGT
CCGTTTTATCAGAGGGACTGAGCATCTGTGATTTGGTGTCCAGGGCCCTAGGAGCAGCCC
CCGACGGGACCCTGCGGGATGCCTGTAGCGGGTTCTTCCGGGGCTCGGTACTCGCAGAGT
GCTGTAAAAAAGGTCCCGAGTGATTTGATTGACTTCTGGAACTTTGGGGATGAATTCTGT
ATAACAAGAATCTGTGTAACAACCTCTAAGTAGATGTTTTAGGATGAGCGGTAACAAAGA
ATATTTTAAGTGTTAGCTTTTGTGGAAAACCTGTAAAAACCTTTATTCAGATGAGCTTGT
TTGCAAGATACTAATAAAGTGTATTTTGTTGTTGTGCTTAATTCAGAGATTTAAATTTTG
TATATCTTATAATTTAAAATCTTATACTTTGTATTTAGGCAGTGTAGTTGGCAGGCAGAT
GAATATTTGTGGTCCTTAATGCTTATATTTTCAATATTTTTGTGATAAAGATTATGTAAT
ATCGTTAACCTTTCAACTTCTGTTATCCGTGTATTGTTTGTTTTCTTCATTAAAAGGCTA
AACATGTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTGTTTTTTACAAAATTTCTCCCTGGATTAGCCATTTTAAATGAAACGGAATTCATC
AATTAAAGGAGTATATAAAATCAGGATTTGCCTTAATATGTGAGTTCAGCTCAGAAGCAT
TTTAAGATAATTGGGAAAACTTGAATTAAAGAAAAAATTAACTTCAATGACTTTTTTTAA
AAGTATAGTTAAAATATTTTTTAACACATTTCACGTAGGGGTCAGTCTGTTTAACTGCAC
CGTTGATGCTTAAGTTGTCCCTTTGCTCTGTGCCTGTGTCAGGTCTTGAAATCTTCTTGG
CAATACCTTTGAATACAATTAATTTTTCACAGTTATGTTGGTTCTTTTGTTATGCCTCTT
TTTAGCTGGAGAACCAAGAAGCAAACTATCACTTTTTAAAAAAAGAATCATTCCTCTCTT
GACTGTTTCTCTCCTTTATACTCAAAAAGAGGTGAGATTAATAGATTATTTTCAAATGAC
CGTCTCTGTCACTGGAAAAAGTGGTCTTATTTGAATCTTTATTCTGGTCTCTTTTGAGAG
GGGAACTCTTCCAGTGAAGTAGCTTTGCAAAATTTTGATGCATTGAATGGCTGAACATAG
GGGGTATATTAAGTCATTTTAAGGCATTAAGTGGATGGATGTATGGGTATTTGCAGAATT
TCAGGGATAATTTCTCTTTTGGATACGACAAAACCTTTATAATAGATGTCCGAGGTCAAT
TTGCGTTTATTGTTGTGGGCTAGATTTGCCTGTCTCAAGCCAGGAAAATCCAATTGGCAT
TTATCTTCCACTTTCGGGGCTGGAGCCGAACAAGAGAAGGTTAGTTGAAACTGGAAAATG
TGGAGCCCATCTAGGAGTCTCTGTTGACTCAGACAGGGGGCAGAGAGCCTTTGTGTTCAG
TAGTTGCAGTTCTAGAGATAGGAGGACTTGATGAACCTTCCTGATTCTCCTTTATTTTAA
ACTATTTGTGGAAGGGCTAAGGTAGAAGGAGAATAGATCCCTTTCGGTTAGAACGAGAGC
TGGGCAGAATGCCATACCACAGCTGCTGCACCCCCCGATTCAACCAGCTGCAGATCCAAA
ATAACCAGGACAGAAAACTCCAGAGATTTCTAAAAAGCAAAATTTGAATTTGCCAAGCAC
TGGCAACTGTTGCCATAGTAGCATTTACATGTTGCACAGCACTTGCCCTGGATTGGGTGT
TGTAAGTAATCTAGCGAGGATGTAAAGCACAGGCAGGGGTGTGCGTGTGAAATACTGCGT
CCGTTTTATCAGAGGGACTGAGCATCTGTGATTTGGTGTCCAGGGCCCTAGGAGCAGCCC
CCGACGGGACCCTGCGGGATGCCTGTAGCGGGTTCTTCCGGGGCTCGGTACTCGCAGAGT
GCTGTAAAAAAGGTCCCGAGTGATTTGATTGACTTCTGGAACTTTGGGGATGAATTCTGT
ATAACAAGAATCTGTGTAACAACCTCTAAGTAGATGTTTTAGGATGAGCGGTAACAAAGA
ATATTTTAAGTGTTAGCTTTTGTGGAAAACCTGTAAAAACCTTTATTCAGATGAGCTTGT
TTGCAAGATACTAATAAAGTGTATTTTGTTGTTGTGCTTAATTCAGAGATTTAAATTTTG
TATATCTTATAATTTAAAATCTTATACTTTGTATTTAGGCAGTGTAGTTGGCAGGCAGAT
GAATATTTGTGGTCCTTAATGCTTATATTTTCAATATTTTTGTGATAAAGATTATGTAAT
ATCGTTAACCTTTCAACTTCTGTTATCCGTGTATTGTTTGTTTTCTTCATTAAAAGGCTA
AACATGTAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-440, gnl|bosTau2|chr3 (40723902-40723463)
               

               
               1-440, gnl|Hg17|chr1 (90205788-90206241)
               

               
               1-440, gnl|Mm7|chr5 (105092507-105092939)
               


               
               455-746, gnl|bosTau2|chr3 (40723214-40722913)
               


               
               802-1233, gnl|bosTau2|chr3 (40722605-40722199)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-440, gnl|bosTau2|chr3 (40723902-40723463)
               

               
               1-440, gnl|Hg17|chr1 (90205788-90206241)
               

               
               1-440, gnl|Mm7|chr5 (105092507-105092939)
               


               
               455-746, gnl|bosTau2|chr3 (40723214-40722913)
               


               
               802-1233, gnl|bosTau2|chr3 (40722605-40722199)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	1-440, gnl\|bosTau2\|chr3 (40723902-40723463)
	1-440, gnl\|Hg17\|chr1 (90205788-90206241)
	1-440, gnl\|Mm7\|chr5 (105092507-105092939)

	455-746, gnl\|bosTau2\|chr3 (40723214-40722913)

	802-1233, gnl\|bosTau2\|chr3 (40722605-40722199)

	fcc (0.39557)
	fhi (0.339155)
	cki (0.330469)
	cte (0.29274)
	fce (0.271592)
	ste (0.270416)
	pla (0.267344)
	nmm (0.265604)
	pan (0.23596)
	ece (0.229305)
	spc (0.226732)
	hea (0.204499)
	ldo (0.194005)
	cmu (0.186393)
	sag (0.182715)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	ebs (0.118301)
	cbl (0.114797)