Ss1.1-Pig4-TMW8052E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGTAACACCAGAAGATTATTCTCAGGTAACTGCAGAGATTCTTACTGGAAATCCAAC AGTACGCTGGGGTGACAAATCTTATAACTTGATTTCCTTTTCTAATGGAGTATTTGGCTG TAGTTGTGATCATTCTCCTTTTGATGCGATGGTTATGGTAAACCTCAGCCATTATATTGA TCAGAAAGTTTTGGAGAACGAAGGAAGATGGAAGGGTTCAGAAAAAGTACGAGAAATACC ACTTCCAGAGGAGCTTGTTTTCACTGTGGATGAAAAAGTATTAAACGACATCAACCAAGC TAAAGCCCAGTATTTCATGCAGGCATCTGACCTGCAGCTTGTGGTGTATGCCTTTACATC TTTTGGCAAAAAGCAAACCAAGAAGAAGCAGCTTCACCCTGATGCGTTTATTCAGCTGGC ACTTCAGCTGGGCTATTATAGACTTCATGGACGCCCTGGTTGCTGCTATGAAACAGCTAT GACAAGATACTTTTATCATGGCCGTACAGAAACCATGCGGTCATGTACAGTAGAAGCAGT TAGTTGGTGCCAGTCCATGCAGGATCCTTCTACCAGTCTTTCTGAGCGGCAGCACAAGAT GTTAGAAGCTTTTGCAAAACATAATAAAATGATGAAAGATTGTTCAGCTGGAAAAGGATT TGACCGTCATCTTTTAGGTCTGTCACTCATAGCAAAAGAGGAAGGTCTTCCTGTTCCAGA ACTCTTTACAGACCCACTTTTCTCCAGAAGTGGAGGAGGTGGAAACTTTGTCCTCTCAAC AAGTCTGGTTGGTTATTTTAGAATCCAGGGAGCAGTGGTTCCAATGGTACACAATGGCTA TGGATTTTTCTATCACATCAGAGATGACAGATTTCTTGTGTCCTGTACAGCCTGGAAATC ATGTCCGGAAACTGATGCAGAAAAGCTAGTTCAGCAGGTTTTTTGTGCTTTCCATGATAT GATGCAGCTGATGAACATTGCTAAGCTTTAGAGACTAATCATTTACTAAGCATTTAGCAA AATATGTCATGAAACTAGGTGCTGGGAGTGGGTTGGTGAAATATATAGGAATATTGAGTG AAGGAAACTTGTTAAATGTAGAAATTAGTAGAATCATGCTCTCTAAATTTATCCTGACAT AGAAAATAGAAATATTTTTAACTTCCTCTCTTGCAGCAGCAATGCAAATTATGATGGGAC TATGGAACTATGCAGAGTTTAAGCCTCAACAATGCAAATCTATCAATTTTAACAATGCAG ATCTTACTCTCTTAAATACAGTTGTTGGTACCTGTATAGGCAGTAAGTCTTCTTTCTGAA CATCATCATAGGGTCTGTCTTTCAAGCACTTTAAATTTTCTAGTTGCCAAAGGATATGAA ATCCATGATTGGATGCTAATTTCCCTGAAATGATTGATTCTATAGGGGTACAAGCCCATG TTCCGGAAAGACCACTACAATTTATTCTAGAAAGAGTTTGTGTTGGACAGGCAGAAGAAT TAGGTTGTAGTTAGGAGGTTTATATCCTCTGACACACACAAAAAACCCTAACAAAATTTA TTATAGTATGTTGTTATAGTTTTGTGAGTATAAAATTAAAGCACTTATATTTAAAGTCAG TGACTTTAAAAGAACTAAGTATGAAATCAGATTCTCAGGATTTTTTTCCTTTGTTCAATT TTGTAGTTTCTACTCAATGAAAATAAAATTCTCAGAATCACAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGTAACACCAGAAGATTATTCTCAGGTAACTGCAGAGATTCTTACTGGAAATCCAAC AGTACGCTGGGGTGACAAATCTTATAACTTGATTTCCTTTTCTAATGGAGTATTTGGCTG TAGTTGTGATCATTCTCCTTTTGATGCGATGGTTATGGTAAACCTCAGCCATTATATTGA TCAGAAAGTTTTGGAGAACGAAGGAAGATGGAAGGGTTCAGAAAAAGTACGAGAAATACC ACTTCCAGAGGAGCTTGTTTTCACTGTGGATGAAAAAGTATTAAACGACATCAACCAAGC TAAAGCCCAGTATTTCATGCAGGCATCTGACCTGCAGCTTGTGGTGTATGCCTTTACATC TTTTGGCAAAAAGCAAACCAAGAAGAAGCAGCTTCACCCTGATGCGTTTATTCAGCTGGC ACTTCAGCTGGGCTATTATAGACTTCATGGACGCCCTGGTTGCTGCTATGAAACAGCTAT GACAAGATACTTTTATCATGGCCGTACAGAAACCATGCGGTCATGTACAGTAGAAGCAGT TAGTTGGTGCCAGTCCATGCAGGATCCTTCTACCAGTCTTTCTGAGCGGCAGCACAAGAT GTTAGAAGCTTTTGCAAAACATAATAAAATGATGAAAGATTGTTCAGCTGGAAAAGGATT TGACCGTCATCTTTTAGGTCTGTCACTCATAGCAAAAGAGGAAGGTCTTCCTGTTCCAGA ACTCTTTACAGACCCACTTTTCTCCAGAAGTGGAGGAGGTGGAAACTTTGTCCTCTCAAC AAGTCTGGTTGGTTATTTTAGAATCCAGGGAGCAGTGGTTCCAATGGTACACAATGGCTA TGGATTTTTCTATCACATCAGAGATGACAGATTTCTTGTGTCCTGTACAGCCTGGAAATC ATGTCCGGAAACTGATGCAGAAAAGCTAGTTCAGCAGGTTTTTTGTGCTTTCCATGATAT GATGCAGCTGATGAACATTGCTAAGCTTTAGAGACTAATCATTTACTAAGCATTTAGCAA AATATGTCATGAAACTAGGTGCTGGGAGTGGGTTGGTGAAATATATAGGAATATTGAGTG AAGGAAACTTGTTAAATGTAGAAATTAGTAGAATCATGCTCTCTAAATTTATCCTGACAT AGAAAATAGAAATATTTTTAACTTCCTCTCTTGCAGCAGCAATGCAAATTATGATGGGAC TATGGAACTATGCAGAGTTTAAGCCTCAACAATGCAAATCTATCAATTTTAACAATGCAG ATCTTACTCTCTTAAATACAGTTGTTGGTACCTGTATAGGCAGTAAGTCTTCTTTCTGAA CATCATCATAGGGTCTGTCTTTCAAGCACTTTAAATTTTCTAGTTGCCAAAGGATATGAA ATCCATGATTGGATGCTAATTTCCCTGAAATGATTGATTCTATAGGGGTACAAGCCCATG TTCCGGAAAGACCACTACAATTTATTCTAGAAAGAGTTTGTGTTGGACAGGCAGAAGAAT TAGGTTGTAGTTAGGAGGTTTATATCCTCTGACACACACAAAAAACCCTAACAAAATTTA TTATAGTATGTTGTTATAGTTTTGTGAGTATAAAATTAAAGCACTTATATTTAAAGTCAG TGACTTTAAAAGAACTAAGTATGAAATCAGATTCTCAGGATTTTTTTCCTTTGTTCAATT TTGTAGTTTCTACTCAATGAAAATAAAATTCTCAGAATCACAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 19-130, gnl|bosTau2|chr4 (12738071-12737961) | |
| 19-130, gnl|canFam2|chr14 (16454486-16454566) | |
| 19-130, gnl|danRer3|chrUn (26829469-26829389) | |
| 19-130, gnl|dasNov1|scaffold_122229 (6162-6082) | |
| 19-130, gnl|echTel1|scaffold_66963 (3957-4037) | |
| 19-130, gnl|fr1|chrUn (62349583-62349639) | |
| 19-130, gnl|galGal2|chr2 (19959163-19959243) | |
| 19-130, gnl|hg17|chr7 (86651308-86651388) | |
| 19-130, gnl|Hg17|chr7 (86651307-86651417) | |
| 19-130, gnl|mm7|chr5 (9013763-9013683) | |
| 19-130, gnl|Mm7|chr5 (9013762-9013652) | |
| 19-130, gnl|monDom2|scaffold_7 (54985109-54985189) | |
| 19-130, gnl|panTro1|chr6 (88159751-88159831) | |
| 19-130, gnl|rheMac2|chr3 (129882902-129882822) | |
| 19-130, gnl|rn3|chr4 (22035213-22035133) | |
| 19-130, gnl|tetNig1|chr8 (7526551-7526607) | |
| 19-130, gnl|xenTro1|scaffold_188 (1815505-1815425) | |
| 321-453, gnl|bosTau2|chr4 (12734163-12734031) | |
| 321-453, gnl|canFam2|chr14 (16461257-16461413) | |
| 321-453, gnl|danRer3|chrUn (26827142-26826989) | |
| 321-453, gnl|dasNov1|scaffold_204000 (2326-2173) | |
| 321-453, gnl|echTel1|scaffold_66963 (7445-7601) | |
| 321-453, gnl|fr1|chrUn (62350077-62350226) | |
| 321-453, gnl|galGal2|chr2 (19960425-19960584) | |
| 321-453, gnl|hg17|chr7 (86656369-86656525) | |
| 321-453, gnl|Hg17|chr7 (86656378-86656510) | |
| 321-453, gnl|loxAfr1|scaffold_24052 (41269-41113) | |
| 321-453, gnl|mm7|chr5 (9011371-9011219) | |
| 321-453, gnl|Mm7|chr5 (9011362-9011230) | |
| 321-453, gnl|monDom2|scaffold_7 (54990278-54990434) | |
| 321-453, gnl|oryCun1|scaffold_158989 (631-787) | |
| 321-453, gnl|panTro1|chr6 (88164809-88164966) | |
| 321-453, gnl|rheMac2|chr3 (129877797-129877641) | |
| 321-453, gnl|rn3|chr4 (22032592-22032440) | |
| 321-453, gnl|tetNig1|chr8 (7527059-7527190) | |
| 321-453, gnl|xenTro1|scaffold_188 (1813782-1813633) | |
| 455-577, gnl|bosTau2|chr4 (13130376-13130498) | |
| 455-577, gnl|Hg17|chr7 (86665557-86665679) | |
| 455-577, gnl|Mm7|chr5 (9007682-9007560) | |
| 868-1565, gnl|bosTau2|chr4 (13137714-13138413) | |
| 868-1565, gnl|Hg17|chr7 (86672488-86673148) | |
| 868-1565, gnl|Mm7|chr5 (9004619-9003946) | |
| 1577-1720, gnl|bosTau2|chr16 (52959097-52958951) | |
| 1577-1720, gnl|Hg17|chr7 (86673567-86673718) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-130, gnl|bosTau2|chr4 (12738071-12737961) | |
| 19-130, gnl|canFam2|chr14 (16454486-16454566) | |
| 19-130, gnl|danRer3|chrUn (26829469-26829389) | |
| 19-130, gnl|dasNov1|scaffold_122229 (6162-6082) | |
| 19-130, gnl|echTel1|scaffold_66963 (3957-4037) | |
| 19-130, gnl|fr1|chrUn (62349583-62349639) | |
| 19-130, gnl|galGal2|chr2 (19959163-19959243) | |
| 19-130, gnl|hg17|chr7 (86651308-86651388) | |
| 19-130, gnl|Hg17|chr7 (86651307-86651417) | |
| 19-130, gnl|mm7|chr5 (9013763-9013683) | |
| 19-130, gnl|Mm7|chr5 (9013762-9013652) | |
| 19-130, gnl|monDom2|scaffold_7 (54985109-54985189) | |
| 19-130, gnl|panTro1|chr6 (88159751-88159831) | |
| 19-130, gnl|rheMac2|chr3 (129882902-129882822) | |
| 19-130, gnl|rn3|chr4 (22035213-22035133) | |
| 19-130, gnl|tetNig1|chr8 (7526551-7526607) | |
| 19-130, gnl|xenTro1|scaffold_188 (1815505-1815425) | |
| 321-453, gnl|bosTau2|chr4 (12734163-12734031) | |
| 321-453, gnl|canFam2|chr14 (16461257-16461413) | |
| 321-453, gnl|danRer3|chrUn (26827142-26826989) | |
| 321-453, gnl|dasNov1|scaffold_204000 (2326-2173) | |
| 321-453, gnl|echTel1|scaffold_66963 (7445-7601) | |
| 321-453, gnl|fr1|chrUn (62350077-62350226) | |
| 321-453, gnl|galGal2|chr2 (19960425-19960584) | |
| 321-453, gnl|hg17|chr7 (86656369-86656525) | |
| 321-453, gnl|Hg17|chr7 (86656378-86656510) | |
| 321-453, gnl|loxAfr1|scaffold_24052 (41269-41113) | |
| 321-453, gnl|mm7|chr5 (9011371-9011219) | |
| 321-453, gnl|Mm7|chr5 (9011362-9011230) | |
| 321-453, gnl|monDom2|scaffold_7 (54990278-54990434) | |
| 321-453, gnl|oryCun1|scaffold_158989 (631-787) | |
| 321-453, gnl|panTro1|chr6 (88164809-88164966) | |
| 321-453, gnl|rheMac2|chr3 (129877797-129877641) | |
| 321-453, gnl|rn3|chr4 (22032592-22032440) | |
| 321-453, gnl|tetNig1|chr8 (7527059-7527190) | |
| 321-453, gnl|xenTro1|scaffold_188 (1813782-1813633) | |
| 455-577, gnl|bosTau2|chr4 (13130376-13130498) | |
| 455-577, gnl|Hg17|chr7 (86665557-86665679) | |
| 455-577, gnl|Mm7|chr5 (9007682-9007560) | |
| 868-1565, gnl|bosTau2|chr4 (13137714-13138413) | |
| 868-1565, gnl|Hg17|chr7 (86672488-86673148) | |
| 868-1565, gnl|Mm7|chr5 (9004619-9003946) | |
| 1577-1720, gnl|bosTau2|chr16 (52959097-52958951) | |
| 1577-1720, gnl|Hg17|chr7 (86673567-86673718) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| lun (0.902935) | |
| liv (0.585137) | |
| tra (0.492368) | |
| lyg (0.399308) | |
| ret (0.3862) | |
| bfe (0.299715) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.902935) | |
| liv (0.585137) | |
| tra (0.492368) | |
| lyg (0.399308) | |
| ret (0.3862) | |
| bfe (0.299715) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |