Non-Coding RNA Search

Ss1.1-Pig4-TMW8052E22.3

Sequence:


               
               TCAGAGGTGACTCATCCTCTTCAACAAGATCCTCCTTCCATGCCCTCCCAACGTCCTTAC
CAAAAGCCTTGGCCACATCGCCGGGACAGCTGCAACCTCCATCCTGCAAAGTAAGGAGAT
CTGTGAAGAGAGAGCATGATTTCCCAAGCCTTCTAGGAGGTTCCCAATGGCCCACCTCCA
AGCTGACAGGAACCCAAGAGTCCTGATCCACCTCTCCCAGAGCCTCCAGACCTGGCAGAA
AACCCCACTGTTTGGCAGCCTCACACTCTACCCTGCCTGTGGGCCTTACCGAGATGATGT
GGCCTTTGAGACCGTGCGCAGCATCTGCACACTCCATCACCGCACTCAGCTGTGGATACC
CCACTCCGGTTTTCTTCCGGGTGGTACAGACAGAGCCTGTGAAGAACGTGACAAGGATGA
GAGTCAGGTTCTCCAGGGGTGCTGGCCACTGAATGGGTGGCTGGTGGCCCCCAGTGAACC
GGCTTACCTGGTCCAATTCCCACTTTGATGATGTCAGCCCCAGAGAGGATCAGCTCTTCC
ACCATCTCTCCTGTTACTACATTCCCTGCCTGGGACAGAACCATCCAGTCAGCATTCTTG
GGACCGGAAACAGAGGAAGCTGTGTGCTTCCAACATTACTACAAAGATGGGTGCCTGGGT
TCCTTCTGTTGGGCCCTCTGAGGGCTTTGAAATGAGCCTCTTCAAAGGAGCCCACTTCCC
AAGCTGAGGTAAGGGGCCAGTGTCACTGTTGTACTAAGGTAAAGCTGGGGTCCAACTGGA
CCAAGCCCACAACTAATTTACAGCAGATTTCTCTCCCTCTCCATGCCCACAGACCCAAAC
ATATCTTGTGTTTTAGCTGTTATGTTATGAAACCTCTCTGGCTTCAGGAAAAAGGGGAAA
ACATGGAAATACAGGCTAAATACCCATCTACACAATTGTATTTGCTTTTGGTGGACAGGA
CAGAGAGACCACTCGATGCTGTGATGAAAAGGAGGCCTTGTCATCACTCCCCTGAGCTTG
TAAAAAATATAAATAAATAAAAAACACTCTCTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGAGGTGACTCATCCTCTTCAACAAGATCCTCCTTCCATGCCCTCCCAACGTCCTTAC
CAAAAGCCTTGGCCACATCGCCGGGACAGCTGCAACCTCCATCCTGCAAAGTAAGGAGAT
CTGTGAAGAGAGAGCATGATTTCCCAAGCCTTCTAGGAGGTTCCCAATGGCCCACCTCCA
AGCTGACAGGAACCCAAGAGTCCTGATCCACCTCTCCCAGAGCCTCCAGACCTGGCAGAA
AACCCCACTGTTTGGCAGCCTCACACTCTACCCTGCCTGTGGGCCTTACCGAGATGATGT
GGCCTTTGAGACCGTGCGCAGCATCTGCACACTCCATCACCGCACTCAGCTGTGGATACC
CCACTCCGGTTTTCTTCCGGGTGGTACAGACAGAGCCTGTGAAGAACGTGACAAGGATGA
GAGTCAGGTTCTCCAGGGGTGCTGGCCACTGAATGGGTGGCTGGTGGCCCCCAGTGAACC
GGCTTACCTGGTCCAATTCCCACTTTGATGATGTCAGCCCCAGAGAGGATCAGCTCTTCC
ACCATCTCTCCTGTTACTACATTCCCTGCCTGGGACAGAACCATCCAGTCAGCATTCTTG
GGACCGGAAACAGAGGAAGCTGTGTGCTTCCAACATTACTACAAAGATGGGTGCCTGGGT
TCCTTCTGTTGGGCCCTCTGAGGGCTTTGAAATGAGCCTCTTCAAAGGAGCCCACTTCCC
AAGCTGAGGTAAGGGGCCAGTGTCACTGTTGTACTAAGGTAAAGCTGGGGTCCAACTGGA
CCAAGCCCACAACTAATTTACAGCAGATTTCTCTCCCTCTCCATGCCCACAGACCCAAAC
ATATCTTGTGTTTTAGCTGTTATGTTATGAAACCTCTCTGGCTTCAGGAAAAAGGGGAAA
ACATGGAAATACAGGCTAAATACCCATCTACACAATTGTATTTGCTTTTGGTGGACAGGA
CAGAGAGACCACTCGATGCTGTGATGAAAAGGAGGCCTTGTCATCACTCCCCTGAGCTTG
TAAAAAATATAAATAAATAAAAAACACTCTCTCATG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.594132
               

               
               277-396, - strand, RNAz p=0.686241
               

               
               474-591, - strand, RNAz p=0.614063

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.594132
               

               
               277-396, - strand, RNAz p=0.686241
               

               
               474-591, - strand, RNAz p=0.614063

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC008021, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008021, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-613, gnl|bosTau2|chr10 (12261881-12262485)
               

               
               1-613, gnl|Hg17|chr14 (23776666-23776071)
               

               
               1-613, gnl|Mm7|chr14 (50544657-50544059)
               


               
               685-1032, gnl|bosTau2|chr10 (12262521-12262873)
               

               
               685-1032, gnl|Hg17|chr14 (23775974-23775526)
               

               
               685-1032, gnl|Mm7|chr14 (50543983-50543576)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr10 (12261881-12262485)
               

               
               1-613, gnl|Hg17|chr14 (23776666-23776071)
               

               
               1-613, gnl|Mm7|chr14 (50544657-50544059)
               


               
               685-1032, gnl|bosTau2|chr10 (12262521-12262873)
               

               
               685-1032, gnl|Hg17|chr14 (23775974-23775526)
               

               
               685-1032, gnl|Mm7|chr14 (50543983-50543576)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               col (0.195008)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-119, - strand, RNAz p=0.594132
	277-396, - strand, RNAz p=0.686241
	474-591, - strand, RNAz p=0.614063

	1-613, gnl\|bosTau2\|chr10 (12261881-12262485)
	1-613, gnl\|Hg17\|chr14 (23776666-23776071)
	1-613, gnl\|Mm7\|chr14 (50544657-50544059)

	685-1032, gnl\|bosTau2\|chr10 (12262521-12262873)
	685-1032, gnl\|Hg17\|chr14 (23775974-23775526)
	685-1032, gnl\|Mm7\|chr14 (50543983-50543576)

	col (0.195008)
	sag (0.182715)
	ill (0.175593)
	pty (0.142714)
	thg (0.126791)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)