Ss1.1-Pig4-TMW8052F01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTCCTGCAGCGGTTGCCGGCTTTGGGCTGGGGAGCTACCCTACGCTCCTCAGACCTGA CCCTTTCGGCGTTCTGCTCTCTCGCTCGCTACCTCGCTCCTTGGCGCCATGACCACCACC ACCACCTTCAAGGGCGTCGACCCCAACAGCAGGAATAGCTCCCGGGTTTTGCGGCCTCCA GGTGGCGGATCCAATTTTTCATTAGGTTTTGATGAACCAACAGAACAACCTGTGAGGAGG AACAAAATGGCCTCTAGCATCTTCGGGACACCTGAGGACAATCCCCCTTCCTGGGCCAAG TCGGCAGGTGCCAAGTCTAGCGGTGGCAGGGAAGATTCTGAGTCATCTGGACCCCAGAGA AGGAACTCTTCTGAAGCAAACTCTGGAGACTTCTTAGAGCTGAAGGGAGAAGGTGACATT CACGAAAACGTGGACATGGACTTGCAGGCCAGCCTGGGGCAGAGCGAGGAAAAGCCCGTG CCCGCCGCCCCTGTGCCCAGCCCGGTGGCACCGGCCCCCGTGCCGTCCCGGAGAAACCCC CCTGGCGGCAAGTCCAGCCTCGTCCTGGGTTAGCTCCGTCTGCCCAGAACGCTGTCGTTT TGTTTCTTTGTTTTCTCCATGCTTGTGAACTGCACAACTTGAGCCTGACTGTACATCTTT TGGATTTGTTTCATTAAAAAAGAAGCACTTTAAAAAAAAAAAAAAAAATTTTTGTTTGTT TTTTGGAAGAACAGGTTCTCTGTCTGTCCTGATTCCTCTGGGTCCGTAGGCCATGGCATG AGTGTTTTCTAGTAGTAGACTGGAGGGAAAGCTTTGTGACACTTAGTACCGTGTTTTTAA GAACAAACAATTGGGTTTCAAATGTGTTAGAGGATCTTTTGTACTGAGGTTTTAAAAACC CTTTTCTTGTCAGCTTTACTTGGGTTGACCAAGCCTGGATTGGACAGACCAGTAAACAGT CCCCAAGCGCTGTCCCTTCAGGCCCCCAAACGAGGTGGTCCTGATGCCCACCCTACCTGG GGTTGCCCTCTGTGCCAGCGCCCCTTGCGCAAAGCCTCTTCCTGTGCCATATGGAGCGAT AGCGGCCTGCCTCTCATGCCTTGCTGCCTGCAAAGCAAAAACAAAACAAACAAAAAAAAC GATTGCCTTTTATTTCTGAACCTTAAGAAATCTTGAAGCCAGATACTAACTTGACTGGCT GAGCAGAGCCTGCTGCTCCCATGCAGAGCATGGCTCCCGTGTTCACTCAAACTTACGCGT TCCGGGCGGTGAAGCAAGGGCAGGACCATGCGGAAGGAGGTGGGTCCTCTCAGCAAAAGG ACCGCCGCGGGCAGTGCTCTTCTTAGATACCTTGAAGCTGTGTGCATGATGCTGGTGCTT GACCACGAGTCGAAAGTCTCATCCTTACAATGTGTGTTGTATTTCCGATCCTGGATTGTT GCTTAAAGTAAACAATGTACACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTCCTGCAGCGGTTGCCGGCTTTGGGCTGGGGAGCTACCCTACGCTCCTCAGACCTGA CCCTTTCGGCGTTCTGCTCTCTCGCTCGCTACCTCGCTCCTTGGCGCCATGACCACCACC ACCACCTTCAAGGGCGTCGACCCCAACAGCAGGAATAGCTCCCGGGTTTTGCGGCCTCCA GGTGGCGGATCCAATTTTTCATTAGGTTTTGATGAACCAACAGAACAACCTGTGAGGAGG AACAAAATGGCCTCTAGCATCTTCGGGACACCTGAGGACAATCCCCCTTCCTGGGCCAAG TCGGCAGGTGCCAAGTCTAGCGGTGGCAGGGAAGATTCTGAGTCATCTGGACCCCAGAGA AGGAACTCTTCTGAAGCAAACTCTGGAGACTTCTTAGAGCTGAAGGGAGAAGGTGACATT CACGAAAACGTGGACATGGACTTGCAGGCCAGCCTGGGGCAGAGCGAGGAAAAGCCCGTG CCCGCCGCCCCTGTGCCCAGCCCGGTGGCACCGGCCCCCGTGCCGTCCCGGAGAAACCCC CCTGGCGGCAAGTCCAGCCTCGTCCTGGGTTAGCTCCGTCTGCCCAGAACGCTGTCGTTT TGTTTCTTTGTTTTCTCCATGCTTGTGAACTGCACAACTTGAGCCTGACTGTACATCTTT TGGATTTGTTTCATTAAAAAAGAAGCACTTTAAAAAAAAAAAAAAAAATTTTTGTTTGTT TTTTGGAAGAACAGGTTCTCTGTCTGTCCTGATTCCTCTGGGTCCGTAGGCCATGGCATG AGTGTTTTCTAGTAGTAGACTGGAGGGAAAGCTTTGTGACACTTAGTACCGTGTTTTTAA GAACAAACAATTGGGTTTCAAATGTGTTAGAGGATCTTTTGTACTGAGGTTTTAAAAACC CTTTTCTTGTCAGCTTTACTTGGGTTGACCAAGCCTGGATTGGACAGACCAGTAAACAGT CCCCAAGCGCTGTCCCTTCAGGCCCCCAAACGAGGTGGTCCTGATGCCCACCCTACCTGG GGTTGCCCTCTGTGCCAGCGCCCCTTGCGCAAAGCCTCTTCCTGTGCCATATGGAGCGAT AGCGGCCTGCCTCTCATGCCTTGCTGCCTGCAAAGCAAAAACAAAACAAACAAAAAAAAC GATTGCCTTTTATTTCTGAACCTTAAGAAATCTTGAAGCCAGATACTAACTTGACTGGCT GAGCAGAGCCTGCTGCTCCCATGCAGAGCATGGCTCCCGTGTTCACTCAAACTTACGCGT TCCGGGCGGTGAAGCAAGGGCAGGACCATGCGGAAGGAGGTGGGTCCTCTCAGCAAAAGG ACCGCCGCGGGCAGTGCTCTTCTTAGATACCTTGAAGCTGTGTGCATGATGCTGGTGCTT GACCACGAGTCGAAAGTCTCATCCTTACAATGTGTGTTGTATTTCCGATCCTGGATTGTT GCTTAAAGTAAACAATGTACACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-117, + strand, RNAz p=0.528687 | |
| 1090-1278, - strand, RNAz p=0.999905 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, + strand, RNAz p=0.528687 | |
| 1090-1278, - strand, RNAz p=0.999905 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-179, gnl|bosTau2|chr11 (53792858-53793036) | |
| 1-179, gnl|canFam2|chr9 (8319341-8319179) | |
| 1-179, gnl|echTel1|scaffold_324876 (54772-54612) | |
| 1-179, gnl|galGal2|chr3_random (1358656-1358818) | |
| 1-179, gnl|hg17|chr2 (174121998-174122167) | |
| 1-179, gnl|Hg17|chr2 (174122156-174121977) | |
| 1-179, gnl|loxAfr1|scaffold_67349 (12323-12492) | |
| 1-179, gnl|mm7|chr5 (63047968-63047822) | |
| 1-179, gnl|monDom2|scaffold_2 (84736368-84736232) | |
| 1-179, gnl|oryCun1|scaffold_179972 (4469-4314) | |
| 1-179, gnl|panTro1|chr13 (63761491-63761660) | |
| 1-179, gnl|rheMac2|chr12 (37051769-37051917) | |
| 1-179, gnl|rn3|chr3 (55280609-55280468) | |
| 305-406, gnl|bosTau2|chr19 (50880079-50880180) | |
| 305-406, gnl|canFam2|chr9 (8329858-8329728) | |
| 305-406, gnl|canFam2|chr9 (8329851-8329755) | |
| 305-406, gnl|dasNov1|scaffold_50955 (2843-2711) | |
| 305-406, gnl|dasNov1|scaffold_50955 (2836-2740) | |
| 305-406, gnl|echTel1|scaffold_301729 (6855-6985) | |
| 305-406, gnl|echTel1|scaffold_324876 (55019-54923) | |
| 305-406, gnl|galGal2|chr3_random (1354986-1355115) | |
| 305-406, gnl|galGal2|chr3_random (1354993-1355085) | |
| 305-406, gnl|hg17|chr17 (70655239-70655371) | |
| 305-406, gnl|Hg17|chr17 (70655348-70655245) | |
| 305-406, gnl|hg17|chr2 (174121752-174121847) | |
| 305-406, gnl|loxAfr1|scaffold_28164 (30837-30970) | |
| 305-406, gnl|loxAfr1|scaffold_28164 (30844-30942) | |
| 305-406, gnl|mm7|chr11 (115611043-115611163) | |
| 305-406, gnl|Mm7|chr11 (115611150-115611049) | |
| 305-406, gnl|mm7|chr5 (63048212-63048117) | |
| 305-406, gnl|monDom2|scaffold_18 (32535020-32535149) | |
| 305-406, gnl|monDom2|scaffold_2 (84736576-84736515) | |
| 305-406, gnl|oryCun1|scaffold_179972 (4710-4616) | |
| 305-406, gnl|oryCun1|scaffold_214351 (127-8) | |
| 305-406, gnl|panTro1|chr13 (63761245-63761340) | |
| 305-406, gnl|panTro1|chr19_random (53061226-53061094) | |
| 305-406, gnl|rheMac2|chr12 (37051523-37051618) | |
| 305-406, gnl|rheMac2|chr16 (70434970-70435102) | |
| 305-406, gnl|rn3|chr10 (105600228-105600319) | |
| 305-406, gnl|rn3|chr3 (55280856-55280760) | |
| 424-1284, gnl|bosTau2|chr19 (50886569-50887431) | |
| 424-1284, gnl|Hg17|chr17 (70643941-70643104) | |
| 424-1284, gnl|Mm7|chr11 (115607345-115606566) | |
| 1295-1464, gnl|bosTau2|chr19 (50887423-50887594) | |
| 1295-1464, gnl|Hg17|chr17 (70643128-70642945) | |
| 1295-1464, gnl|Mm7|chr11 (115606579-115606404) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-179, gnl|bosTau2|chr11 (53792858-53793036) | |
| 1-179, gnl|canFam2|chr9 (8319341-8319179) | |
| 1-179, gnl|echTel1|scaffold_324876 (54772-54612) | |
| 1-179, gnl|galGal2|chr3_random (1358656-1358818) | |
| 1-179, gnl|hg17|chr2 (174121998-174122167) | |
| 1-179, gnl|Hg17|chr2 (174122156-174121977) | |
| 1-179, gnl|loxAfr1|scaffold_67349 (12323-12492) | |
| 1-179, gnl|mm7|chr5 (63047968-63047822) | |
| 1-179, gnl|monDom2|scaffold_2 (84736368-84736232) | |
| 1-179, gnl|oryCun1|scaffold_179972 (4469-4314) | |
| 1-179, gnl|panTro1|chr13 (63761491-63761660) | |
| 1-179, gnl|rheMac2|chr12 (37051769-37051917) | |
| 1-179, gnl|rn3|chr3 (55280609-55280468) | |
| 305-406, gnl|bosTau2|chr19 (50880079-50880180) | |
| 305-406, gnl|canFam2|chr9 (8329858-8329728) | |
| 305-406, gnl|canFam2|chr9 (8329851-8329755) | |
| 305-406, gnl|dasNov1|scaffold_50955 (2843-2711) | |
| 305-406, gnl|dasNov1|scaffold_50955 (2836-2740) | |
| 305-406, gnl|echTel1|scaffold_301729 (6855-6985) | |
| 305-406, gnl|echTel1|scaffold_324876 (55019-54923) | |
| 305-406, gnl|galGal2|chr3_random (1354986-1355115) | |
| 305-406, gnl|galGal2|chr3_random (1354993-1355085) | |
| 305-406, gnl|hg17|chr17 (70655239-70655371) | |
| 305-406, gnl|Hg17|chr17 (70655348-70655245) | |
| 305-406, gnl|hg17|chr2 (174121752-174121847) | |
| 305-406, gnl|loxAfr1|scaffold_28164 (30837-30970) | |
| 305-406, gnl|loxAfr1|scaffold_28164 (30844-30942) | |
| 305-406, gnl|mm7|chr11 (115611043-115611163) | |
| 305-406, gnl|Mm7|chr11 (115611150-115611049) | |
| 305-406, gnl|mm7|chr5 (63048212-63048117) | |
| 305-406, gnl|monDom2|scaffold_18 (32535020-32535149) | |
| 305-406, gnl|monDom2|scaffold_2 (84736576-84736515) | |
| 305-406, gnl|oryCun1|scaffold_179972 (4710-4616) | |
| 305-406, gnl|oryCun1|scaffold_214351 (127-8) | |
| 305-406, gnl|panTro1|chr13 (63761245-63761340) | |
| 305-406, gnl|panTro1|chr19_random (53061226-53061094) | |
| 305-406, gnl|rheMac2|chr12 (37051523-37051618) | |
| 305-406, gnl|rheMac2|chr16 (70434970-70435102) | |
| 305-406, gnl|rn3|chr10 (105600228-105600319) | |
| 305-406, gnl|rn3|chr3 (55280856-55280760) | |
| 424-1284, gnl|bosTau2|chr19 (50886569-50887431) | |
| 424-1284, gnl|Hg17|chr17 (70643941-70643104) | |
| 424-1284, gnl|Mm7|chr11 (115607345-115606566) | |
| 1295-1464, gnl|bosTau2|chr19 (50887423-50887594) | |
| 1295-1464, gnl|Hg17|chr17 (70643128-70642945) | |
| 1295-1464, gnl|Mm7|chr11 (115606579-115606404) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| ecc (1.15035) | |
| ebs (0.828108) | |
| fbs (0.701385) | |
| ese (0.632511) | |
| col (0.585023) | |
| med (0.465008) | |
| ece (0.45861) | |
| elu (0.385356) | |
| cly (0.361925) | |
| eru (0.360144) | |
| eye (0.341006) | |
| nco (0.323468) | |
| cag (0.302389) | |
| pla (0.267344) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cbr (0.127975) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (1.15035) | |
| ebs (0.828108) | |
| fbs (0.701385) | |
| ese (0.632511) | |
| col (0.585023) | |
| med (0.465008) | |
| ece (0.45861) | |
| elu (0.385356) | |
| cly (0.361925) | |
| eru (0.360144) | |
| eye (0.341006) | |
| nco (0.323468) | |
| cag (0.302389) | |
| pla (0.267344) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cbr (0.127975) |