Ss1.1-Pig4-TMW8052F03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGCTCTTCTCCTGGAGTGTCGGCGCCGCCCATGGCCGAAGTGCTGGATCCGGACCCC AGGACAGCCGAGTGCTCGGAGGCCCCGGCAGTGGAGACGCCGGGCTGGGAGGCCCCGGAG GACACTGGCCCCCAGCCCGGAAGTTATGAGATCCGCCACTATGGACCGGCCAAGTGGGTC AGCACTTCAGTGGAGTCTACGGACTGGGATTCAGCCATCCAGACTGGCTTTACCCGGCTG AATAGCTACATTCAAGGCAAAAACGAGAAGGAGATGAAAATCAAGATGACAGCTCCAGTG ACAAGCTACGTGGAGCCGGGTTCAGGTCCTTTTAGCGAGTCTACCATTACCATTTCCCTG TATATCCCATCTGAACAGCAATCTGATCCGCCCAGGCCTACAGAGTCAAATGTCTTCATT GAAGACAGAGCTGAAATGACGGTGTTTGTACGGTCTTTCGATGGATTCTCTAGTGCCCAA AAGAACCAAGAACAACTCTTGACATTAGCAAGCGTGCTGAGGGAAGAAGGAAAAGTTTTC GATGAAAAGGTTTACTACACTGCAGGCTACAGCAGTCCTTTCGAATTGCTGGATAGAAAT AATGAAGTGTGGTTGATTCAGAAAAATGAACCCTCCAAAGAAACGGAATGAGAAAATGAG GGCAAGTCCATTGCCAGGGGCAAAACTTCTGTTTAACATAGACATCAACATTACCTGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGCTCTTCTCCTGGAGTGTCGGCGCCGCCCATGGCCGAAGTGCTGGATCCGGACCCC AGGACAGCCGAGTGCTCGGAGGCCCCGGCAGTGGAGACGCCGGGCTGGGAGGCCCCGGAG GACACTGGCCCCCAGCCCGGAAGTTATGAGATCCGCCACTATGGACCGGCCAAGTGGGTC AGCACTTCAGTGGAGTCTACGGACTGGGATTCAGCCATCCAGACTGGCTTTACCCGGCTG AATAGCTACATTCAAGGCAAAAACGAGAAGGAGATGAAAATCAAGATGACAGCTCCAGTG ACAAGCTACGTGGAGCCGGGTTCAGGTCCTTTTAGCGAGTCTACCATTACCATTTCCCTG TATATCCCATCTGAACAGCAATCTGATCCGCCCAGGCCTACAGAGTCAAATGTCTTCATT GAAGACAGAGCTGAAATGACGGTGTTTGTACGGTCTTTCGATGGATTCTCTAGTGCCCAA AAGAACCAAGAACAACTCTTGACATTAGCAAGCGTGCTGAGGGAAGAAGGAAAAGTTTTC GATGAAAAGGTTTACTACACTGCAGGCTACAGCAGTCCTTTCGAATTGCTGGATAGAAAT AATGAAGTGTGGTTGATTCAGAAAAATGAACCCTCCAAAGAAACGGAATGAGAAAATGAG GGCAAGTCCATTGCCAGGGGCAAAACTTCTGTTTAACATAGACATCAACATTACCTGTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 134-269, gnl|bosTau2|chr9 (44857037-44857172) | |
| 134-269, gnl|canFam2|chr1 (33760570-33760444) | |
| 134-269, gnl|canFam2|chr1 (33760431-33760607) | |
| 134-269, gnl|danRer3|chr20 (34354472-34354640) | |
| 134-269, gnl|dasNov1|scaffold_42201 (36869-36735) | |
| 134-269, gnl|dasNov1|scaffold_48201 (3938-4074) | |
| 134-269, gnl|echTel1|scaffold_193799 (3809-3672) | |
| 134-269, gnl|echTel1|scaffold_228318 (21717-21549) | |
| 134-269, gnl|hg17|chr2 (156715921-156716054) | |
| 134-269, gnl|hg17|chr6 (138767963-138768131) | |
| 134-269, gnl|Hg17|chr6 (138767973-138768108) | |
| 134-269, gnl|loxAfr1|scaffold_28418 (19646-19814) | |
| 134-269, gnl|loxAfr1|scaffold_94371 (5126-5249) | |
| 134-269, gnl|mm7|chr10 (18268155-18268289) | |
| 134-269, gnl|mm7|chr10 (18268300-18268137) | |
| 134-269, gnl|Mm7|chr10 (18268288-18268153) | |
| 134-269, gnl|monDom2|scaffold_0 (71309644-71309779) | |
| 134-269, gnl|monDom2|scaffold_0 (71309790-71309625) | |
| 134-269, gnl|oryCun1|scaffold_193067 (11735-11601) | |
| 134-269, gnl|oryCun1|scaffold_193067 (11590-11757) | |
| 134-269, gnl|panTro1|chr13 (45912403-45912536) | |
| 134-269, gnl|panTro1|chr5 (141583352-141583520) | |
| 134-269, gnl|rheMac2|chr12 (19642052-19642185) | |
| 134-269, gnl|rheMac2|chr4 (125438128-125437960) | |
| 134-269, gnl|rn3|chr1 (13635053-13635186) | |
| 134-269, gnl|rn3|chr1 (13635198-13635035) | |
| 445-720, gnl|bosTau2|chr9 (44862189-44862464) | |
| 445-720, gnl|canFam2|chr1 (33767806-33767582) | |
| 445-720, gnl|dasNov1|scaffold_42201 (37332-37111) | |
| 445-720, gnl|echTel1|scaffold_193799 (4268-4024) | |
| 445-720, gnl|hg17|chr2 (156715182-156715437) | |
| 445-720, gnl|Hg17|chr6 (138775703-138775979) | |
| 445-720, gnl|loxAfr1|scaffold_94371 (4696-4938) | |
| 445-720, gnl|mm7|chr10 (18264131-18264367) | |
| 445-720, gnl|Mm7|chr10 (18264412-18264143) | |
| 445-720, gnl|monDom2|scaffold_0 (71305386-71305633) | |
| 445-720, gnl|oryCun1|scaffold_193067 (18300-17995) | |
| 445-720, gnl|panTro1|chr13 (45911668-45911923) | |
| 445-720, gnl|rheMac2|chr12 (19641363-19641626) | |
| 445-720, gnl|rn3|chr1 (13630782-13631011) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-269, gnl|bosTau2|chr9 (44857037-44857172) | |
| 134-269, gnl|canFam2|chr1 (33760570-33760444) | |
| 134-269, gnl|canFam2|chr1 (33760431-33760607) | |
| 134-269, gnl|danRer3|chr20 (34354472-34354640) | |
| 134-269, gnl|dasNov1|scaffold_42201 (36869-36735) | |
| 134-269, gnl|dasNov1|scaffold_48201 (3938-4074) | |
| 134-269, gnl|echTel1|scaffold_193799 (3809-3672) | |
| 134-269, gnl|echTel1|scaffold_228318 (21717-21549) | |
| 134-269, gnl|hg17|chr2 (156715921-156716054) | |
| 134-269, gnl|hg17|chr6 (138767963-138768131) | |
| 134-269, gnl|Hg17|chr6 (138767973-138768108) | |
| 134-269, gnl|loxAfr1|scaffold_28418 (19646-19814) | |
| 134-269, gnl|loxAfr1|scaffold_94371 (5126-5249) | |
| 134-269, gnl|mm7|chr10 (18268155-18268289) | |
| 134-269, gnl|mm7|chr10 (18268300-18268137) | |
| 134-269, gnl|Mm7|chr10 (18268288-18268153) | |
| 134-269, gnl|monDom2|scaffold_0 (71309644-71309779) | |
| 134-269, gnl|monDom2|scaffold_0 (71309790-71309625) | |
| 134-269, gnl|oryCun1|scaffold_193067 (11735-11601) | |
| 134-269, gnl|oryCun1|scaffold_193067 (11590-11757) | |
| 134-269, gnl|panTro1|chr13 (45912403-45912536) | |
| 134-269, gnl|panTro1|chr5 (141583352-141583520) | |
| 134-269, gnl|rheMac2|chr12 (19642052-19642185) | |
| 134-269, gnl|rheMac2|chr4 (125438128-125437960) | |
| 134-269, gnl|rn3|chr1 (13635053-13635186) | |
| 134-269, gnl|rn3|chr1 (13635198-13635035) | |
| 445-720, gnl|bosTau2|chr9 (44862189-44862464) | |
| 445-720, gnl|canFam2|chr1 (33767806-33767582) | |
| 445-720, gnl|dasNov1|scaffold_42201 (37332-37111) | |
| 445-720, gnl|echTel1|scaffold_193799 (4268-4024) | |
| 445-720, gnl|hg17|chr2 (156715182-156715437) | |
| 445-720, gnl|Hg17|chr6 (138775703-138775979) | |
| 445-720, gnl|loxAfr1|scaffold_94371 (4696-4938) | |
| 445-720, gnl|mm7|chr10 (18264131-18264367) | |
| 445-720, gnl|Mm7|chr10 (18264412-18264143) | |
| 445-720, gnl|monDom2|scaffold_0 (71305386-71305633) | |
| 445-720, gnl|oryCun1|scaffold_193067 (18300-17995) | |
| 445-720, gnl|panTro1|chr13 (45911668-45911923) | |
| 445-720, gnl|rheMac2|chr12 (19641363-19641626) | |
| 445-720, gnl|rn3|chr1 (13630782-13631011) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| che (0.272628) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| eru (0.120048) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| cmu (0.186393) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| eru (0.120048) |