Ss1.1-Pig4-TMW8052F05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTCGCGGATGATCTCCAACCCCACCAACTTCAATCACGTGGCCCACATGGGCCCCGGC GACGGCATGCAGGTGCTCATGGACCTGCCTCTGAGCGCTGTGCCCCCTTCCCAGGAGGAA AGGCCCGGCCCTGCTCCTGCCAGCCTGTCGCGTCAGCCTCCGCCCAGGAACAAGCCCTAC GTCTCCTGGCCCTCATCGGGTGGCTCTGAGCCCGGGGTGGCTGTGCCTCTGAGAAGCATG TCTGATCCCGACCAGGACTTTGACAAGGAGCCCGATTCGGACTCCACCAAACACTCGACT CCATCCAACAGCTCCAACCCCAGCGGCCCGCCGAGCCCCAACTCTCCCCACAGGAGCCAG CTCCCGCTCGAAGGCCTGGAGCAGCCGTCCTATGACGCCTGAAGCCGACGCTCACCGCCT CGGGGCCGGGGGGCCTCCAGTGTCAGTGCCAAGACTGATCTGACCTCCAGTGCTGTCCAA GGAAGTGTAGAAGTGACGTGTGGAGACAGGGAGGAGAAACTTCTTTACTGTGACACTGAC CGGTTTTGTGCCCCGGCCATGGCGGTGGACCAGGCCCCTGCCTCTGCTCAGGTGTGCGGC GCCCGCTCCGTTTGCACAGGAAGGACCGCCACGCAGCCGCTGCCTCCAGAACCAGCCGAG CAGGCGCGTGGGGCCTGCGGACGCCGGCCTCCTGGGCAGAAAGCCAGCAGACCCGGCTCG GCTCGGCTCGGGAAGCAGACAGCGAGGGCGGCCTCAGTAACGCGTCTGTTCCTGTTTCCT AAAACTTTCCTAGGCCCTTAGGAGAAGAGTAGGAAGTCGTTTGTCATTCCCAGTGTCACT AGAATTTTGAAGACAGGAAAGTGGAGGTTAGTTTGTGGCCTTTTGACTCATTTAGCCGTT ACAGATGCCGAGGTGCTTCTGCCACCCCTGTAGAACGTGGACAGAGGCCTCTGTCGTGTG ACACCTGCCCTGGGTCCCTTGTGCGTGTCAGTCCCTTCCCGGTCACAACTATGAAGAGTC ACCAGTATCTACTACTGTGAAGTCAGCTGTGCTCTGTTTTCCGCTCACTTCCGCAGCTCT GCCTCCTGCTGTTAAAGCAGCGGGTGTCGTGGTGCAGCTGGGCCTGGAGGCCTGTGGGCT GAGAGGAGGCTAGAGCCCCATGGAGCCCCACAGCAGGTGCCAGGACCCCGCCCTGCATGG AGCCCCGTGATTCGTGCCCTTCTGGATCACGTCGACTCGCCGCCACACTCCCCAGCGGCC CCCGCACCCTCGTGTTCCTGGCTCCCTCCCTGCAGCGTTTGAGTCATTAGTGGTGGCCTG TCTCTCTAAAGGCTCGTGATTACCTGGCTGGCACACAGCTTGTCCTTGGCCCTGGACAGA TTCTCCCAGCTCTCCCACTGGTCAGCATTCCTGGCGACGCTGCTGAAGACGTGCACTTAC CTTGAGTCAGCACTGAGTGATGTGGCACCACTGTCTGCCAGTGTGTGTCACAAACCCAGC ACCCGCCTGCCCAACCACCCCGCTGGGCCTTCTGCTGGGGCTGGCACCTGCTGGGTGGGG CTTCTGGTTTTTACTTTTTTAATGTAAGTCCGAGTCTTTGTAATTATTGAATTGTGAGAA CATTTTTGAACAATTTACCTGTCAATAAAGCAGAAAGATGACAGTTTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTCGCGGATGATCTCCAACCCCACCAACTTCAATCACGTGGCCCACATGGGCCCCGGC GACGGCATGCAGGTGCTCATGGACCTGCCTCTGAGCGCTGTGCCCCCTTCCCAGGAGGAA AGGCCCGGCCCTGCTCCTGCCAGCCTGTCGCGTCAGCCTCCGCCCAGGAACAAGCCCTAC GTCTCCTGGCCCTCATCGGGTGGCTCTGAGCCCGGGGTGGCTGTGCCTCTGAGAAGCATG TCTGATCCCGACCAGGACTTTGACAAGGAGCCCGATTCGGACTCCACCAAACACTCGACT CCATCCAACAGCTCCAACCCCAGCGGCCCGCCGAGCCCCAACTCTCCCCACAGGAGCCAG CTCCCGCTCGAAGGCCTGGAGCAGCCGTCCTATGACGCCTGAAGCCGACGCTCACCGCCT CGGGGCCGGGGGGCCTCCAGTGTCAGTGCCAAGACTGATCTGACCTCCAGTGCTGTCCAA GGAAGTGTAGAAGTGACGTGTGGAGACAGGGAGGAGAAACTTCTTTACTGTGACACTGAC CGGTTTTGTGCCCCGGCCATGGCGGTGGACCAGGCCCCTGCCTCTGCTCAGGTGTGCGGC GCCCGCTCCGTTTGCACAGGAAGGACCGCCACGCAGCCGCTGCCTCCAGAACCAGCCGAG CAGGCGCGTGGGGCCTGCGGACGCCGGCCTCCTGGGCAGAAAGCCAGCAGACCCGGCTCG GCTCGGCTCGGGAAGCAGACAGCGAGGGCGGCCTCAGTAACGCGTCTGTTCCTGTTTCCT AAAACTTTCCTAGGCCCTTAGGAGAAGAGTAGGAAGTCGTTTGTCATTCCCAGTGTCACT AGAATTTTGAAGACAGGAAAGTGGAGGTTAGTTTGTGGCCTTTTGACTCATTTAGCCGTT ACAGATGCCGAGGTGCTTCTGCCACCCCTGTAGAACGTGGACAGAGGCCTCTGTCGTGTG ACACCTGCCCTGGGTCCCTTGTGCGTGTCAGTCCCTTCCCGGTCACAACTATGAAGAGTC ACCAGTATCTACTACTGTGAAGTCAGCTGTGCTCTGTTTTCCGCTCACTTCCGCAGCTCT GCCTCCTGCTGTTAAAGCAGCGGGTGTCGTGGTGCAGCTGGGCCTGGAGGCCTGTGGGCT GAGAGGAGGCTAGAGCCCCATGGAGCCCCACAGCAGGTGCCAGGACCCCGCCCTGCATGG AGCCCCGTGATTCGTGCCCTTCTGGATCACGTCGACTCGCCGCCACACTCCCCAGCGGCC CCCGCACCCTCGTGTTCCTGGCTCCCTCCCTGCAGCGTTTGAGTCATTAGTGGTGGCCTG TCTCTCTAAAGGCTCGTGATTACCTGGCTGGCACACAGCTTGTCCTTGGCCCTGGACAGA TTCTCCCAGCTCTCCCACTGGTCAGCATTCCTGGCGACGCTGCTGAAGACGTGCACTTAC CTTGAGTCAGCACTGAGTGATGTGGCACCACTGTCTGCCAGTGTGTGTCACAAACCCAGC ACCCGCCTGCCCAACCACCCCGCTGGGCCTTCTGCTGGGGCTGGCACCTGCTGGGTGGGG CTTCTGGTTTTTACTTTTTTAATGTAAGTCCGAGTCTTTGTAATTATTGAATTGTGAGAA CATTTTTGAACAATTTACCTGTCAATAAAGCAGAAAGATGACAGTTTTAAAAAAAAAAAA |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 93-201, gnl|bosTau2|chr21 (47098232-47098124) | |
| 93-201, gnl|canFam2|chr8 (73860352-73860483) | |
| 93-201, gnl|danRer3|chr20 (18710820-18710955) | |
| 93-201, gnl|dasNov1|scaffold_107875 (8433-8311) | |
| 93-201, gnl|echTel1|scaffold_294940 (54565-54700) | |
| 93-201, gnl|galGal2|chr5 (46719101-46719235) | |
| 93-201, gnl|hg17|chr14 (102474390-102474521) | |
| 93-201, gnl|Hg17|chr14 (102474502-102474394) | |
| 93-201, gnl|mm7|chr12 (108811468-108811599) | |
| 93-201, gnl|Mm7|chr12 (108811580-108811472) | |
| 93-201, gnl|monDom2|scaffold_6 (86973179-86973307) | |
| 93-201, gnl|oryCun1|scaffold_146799 (19210-19087) | |
| 93-201, gnl|panTro1|chr15 (103084448-103084579) | |
| 93-201, gnl|rheMac2|chr7 (166254280-166254411) | |
| 93-201, gnl|rn3|chr6 (136064200-136064331) | |
| 93-201, gnl|xenTro1|scaffold_127 (1001901-1002030) | |
| 269-688, gnl|bosTau2|chr21 (47095625-47095203) | |
| 269-688, gnl|Hg17|chr14 (102469935-102469448) | |
| 269-688, gnl|Mm7|chr12 (108810652-108810219) | |
| 712-953, gnl|bosTau2|chr21 (47095230-47094983) | |
| 712-953, gnl|canFam2|chr8 (73853405-73853770) | |
| 712-953, gnl|dasNov1|scaffold_287146 (837-555) | |
| 712-953, gnl|echTel1|scaffold_296926 (3861-4112) | |
| 712-953, gnl|galGal2|chr5 (46716174-46716630) | |
| 712-953, gnl|hg17|chr14 (102469219-102469584) | |
| 712-953, gnl|Hg17|chr14 (102469503-102469203) | |
| 712-953, gnl|loxAfr1|scaffold_50059 (14255-14551) | |
| 712-953, gnl|mm7|chr12 (108810063-108810310) | |
| 712-953, gnl|monDom2|scaffold_6 (86969913-86970339) | |
| 712-953, gnl|oryCun1|scaffold_103811 (5045-5350) | |
| 712-953, gnl|panTro1|chr15 (103079270-103079636) | |
| 712-953, gnl|rheMac2|chr7 (166248622-166248986) | |
| 712-953, gnl|rn3|chr6 (136060749-136061009) | |
| 987-1146, gnl|bosTau2|chr21 (47094980-47094828) | |
| 987-1146, gnl|canFam2|chr8 (73853241-73853400) | |
| 987-1146, gnl|dasNov1|scaffold_287146 (972-838) | |
| 987-1146, gnl|echTel1|scaffold_296926 (3762-3860) | |
| 987-1146, gnl|galGal2|chr5 (46715961-46716173) | |
| 987-1146, gnl|hg17|chr14 (102469042-102469218) | |
| 987-1146, gnl|Hg17|chr14 (102469200-102469038) | |
| 987-1146, gnl|loxAfr1|scaffold_50059 (14121-14254) | |
| 987-1146, gnl|mm7|chr12 (108809920-108810062) | |
| 987-1146, gnl|Mm7|chr12 (108810058-108809919) | |
| 987-1146, gnl|oryCun1|scaffold_103811 (4942-5044) | |
| 987-1146, gnl|panTro1|chr15 (103079093-103079269) | |
| 987-1146, gnl|rheMac2|chr7 (166248441-166248621) | |
| 987-1146, gnl|rn3|chr6 (136060629-136060748) | |
| 1519-1671, gnl|bosTau2|chr21 (47094566-47094419) | |
| 1519-1671, gnl|Hg17|chr14 (102468622-102468473) | |
| 1519-1671, gnl|Mm7|chr12 (108809554-108809397) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-201, gnl|bosTau2|chr21 (47098232-47098124) | |
| 93-201, gnl|canFam2|chr8 (73860352-73860483) | |
| 93-201, gnl|danRer3|chr20 (18710820-18710955) | |
| 93-201, gnl|dasNov1|scaffold_107875 (8433-8311) | |
| 93-201, gnl|echTel1|scaffold_294940 (54565-54700) | |
| 93-201, gnl|galGal2|chr5 (46719101-46719235) | |
| 93-201, gnl|hg17|chr14 (102474390-102474521) | |
| 93-201, gnl|Hg17|chr14 (102474502-102474394) | |
| 93-201, gnl|mm7|chr12 (108811468-108811599) | |
| 93-201, gnl|Mm7|chr12 (108811580-108811472) | |
| 93-201, gnl|monDom2|scaffold_6 (86973179-86973307) | |
| 93-201, gnl|oryCun1|scaffold_146799 (19210-19087) | |
| 93-201, gnl|panTro1|chr15 (103084448-103084579) | |
| 93-201, gnl|rheMac2|chr7 (166254280-166254411) | |
| 93-201, gnl|rn3|chr6 (136064200-136064331) | |
| 93-201, gnl|xenTro1|scaffold_127 (1001901-1002030) | |
| 269-688, gnl|bosTau2|chr21 (47095625-47095203) | |
| 269-688, gnl|Hg17|chr14 (102469935-102469448) | |
| 269-688, gnl|Mm7|chr12 (108810652-108810219) | |
| 712-953, gnl|bosTau2|chr21 (47095230-47094983) | |
| 712-953, gnl|canFam2|chr8 (73853405-73853770) | |
| 712-953, gnl|dasNov1|scaffold_287146 (837-555) | |
| 712-953, gnl|echTel1|scaffold_296926 (3861-4112) | |
| 712-953, gnl|galGal2|chr5 (46716174-46716630) | |
| 712-953, gnl|hg17|chr14 (102469219-102469584) | |
| 712-953, gnl|Hg17|chr14 (102469503-102469203) | |
| 712-953, gnl|loxAfr1|scaffold_50059 (14255-14551) | |
| 712-953, gnl|mm7|chr12 (108810063-108810310) | |
| 712-953, gnl|monDom2|scaffold_6 (86969913-86970339) | |
| 712-953, gnl|oryCun1|scaffold_103811 (5045-5350) | |
| 712-953, gnl|panTro1|chr15 (103079270-103079636) | |
| 712-953, gnl|rheMac2|chr7 (166248622-166248986) | |
| 712-953, gnl|rn3|chr6 (136060749-136061009) | |
| 987-1146, gnl|bosTau2|chr21 (47094980-47094828) | |
| 987-1146, gnl|canFam2|chr8 (73853241-73853400) | |
| 987-1146, gnl|dasNov1|scaffold_287146 (972-838) | |
| 987-1146, gnl|echTel1|scaffold_296926 (3762-3860) | |
| 987-1146, gnl|galGal2|chr5 (46715961-46716173) | |
| 987-1146, gnl|hg17|chr14 (102469042-102469218) | |
| 987-1146, gnl|Hg17|chr14 (102469200-102469038) | |
| 987-1146, gnl|loxAfr1|scaffold_50059 (14121-14254) | |
| 987-1146, gnl|mm7|chr12 (108809920-108810062) | |
| 987-1146, gnl|Mm7|chr12 (108810058-108809919) | |
| 987-1146, gnl|oryCun1|scaffold_103811 (4942-5044) | |
| 987-1146, gnl|panTro1|chr15 (103079093-103079269) | |
| 987-1146, gnl|rheMac2|chr7 (166248441-166248621) | |
| 987-1146, gnl|rn3|chr6 (136060629-136060748) | |
| 1519-1671, gnl|bosTau2|chr21 (47094566-47094419) | |
| 1519-1671, gnl|Hg17|chr14 (102468622-102468473) | |
| 1519-1671, gnl|Mm7|chr12 (108809554-108809397) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cty (0.41632) | |
| aor (0.390549) | |
| nje (0.33184) | |
| pla (0.267344) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cty (0.41632) | |
| aor (0.390549) | |
| nje (0.33184) | |
| pla (0.267344) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ecc (0.115035) |