Ss1.1-Pig4-TMW8052F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACAGAAGACCTTAAACCTCCAAAAAAGGCAAGAAAGCTTCCGCATAACTGGGTAGAAC AAAAGGGGGAGAAAAAGAGAAAGAAGAGGAAAAAAAAGGAATGAGGACCTGAACAGTACT CCTGAGAGGGAGCTGTGAAAGAGAAAAGGAATCCTCACCTTGGGAGGCCACCTGACAGAT GGGGAGATCAGCTGGGTTGGAAGTGATTTTTAAACATTTCATTTATAGTTATTTTTAGTA TTGTTTTAAACCATGCTTCATTTTTTAATTTTCATCCAAAAGCCATTGTCTATTTTTGTA TTATTTGTAAGTTAAGAAGTTTTTTCCAATATATGGCAAAAAAATAGTAGCATATTATTC TTGTAGCATTTAGTTCCGTAGATTTAAAAAAAATGTATCCTTTGCTTTGGAAGCTTACAG AAAAAAAACAAAAAACAAACAAAAAAAAACAACCCTAATGCTGTTTTACTCTATTAATAT GCATGGAACCTCTCCCTTTGGAGTGACGCATTTTGTGCATTAAATTCCGAGGAGAAACTT CATAGAAATCAGTGAACATACTTTCTTTCCTAAGTCTGCTTGTATATTTCCTCTGTCTTT CACATAAATATAAACCAGCAGATTGGATGCCTTAACAATGCAAATCATATTCATTTCACT TGTACATTGTAACTGTGCACCAGAACTGTCAGTCATCACTCACATTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACAGAAGACCTTAAACCTCCAAAAAAGGCAAGAAAGCTTCCGCATAACTGGGTAGAAC AAAAGGGGGAGAAAAAGAGAAAGAAGAGGAAAAAAAAGGAATGAGGACCTGAACAGTACT CCTGAGAGGGAGCTGTGAAAGAGAAAAGGAATCCTCACCTTGGGAGGCCACCTGACAGAT GGGGAGATCAGCTGGGTTGGAAGTGATTTTTAAACATTTCATTTATAGTTATTTTTAGTA TTGTTTTAAACCATGCTTCATTTTTTAATTTTCATCCAAAAGCCATTGTCTATTTTTGTA TTATTTGTAAGTTAAGAAGTTTTTTCCAATATATGGCAAAAAAATAGTAGCATATTATTC TTGTAGCATTTAGTTCCGTAGATTTAAAAAAAATGTATCCTTTGCTTTGGAAGCTTACAG AAAAAAAACAAAAAACAAACAAAAAAAAACAACCCTAATGCTGTTTTACTCTATTAATAT GCATGGAACCTCTCCCTTTGGAGTGACGCATTTTGTGCATTAAATTCCGAGGAGAAACTT CATAGAAATCAGTGAACATACTTTCTTTCCTAAGTCTGCTTGTATATTTCCTCTGTCTTT CACATAAATATAAACCAGCAGATTGGATGCCTTAACAATGCAAATCATATTCATTTCACT TGTACATTGTAACTGTGCACCAGAACTGTCAGTCATCACTCACATTCG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 486-683, + strand, RNAz p=0.775006 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 486-683, + strand, RNAz p=0.775006 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 190-427, gnl|bosTau2|chr7 (47343816-47343577) | |
| 190-427, gnl|Hg17|chr5 (158057020-158056777) | |
| 190-427, gnl|Mm7|chr11 (44963279-44963509) | |
| 446-707, gnl|bosTau2|chr7 (47343583-47343322) | |
| 446-707, gnl|canFam2|chr4 (54967233-54967041) | |
| 446-707, gnl|danRer3|chr14 (58938344-58938629) | |
| 446-707, gnl|dasNov1|scaffold_44 (255714-255905) | |
| 446-707, gnl|echTel1|scaffold_312022 (44472-44664) | |
| 446-707, gnl|fr1|chrUn (141467441-141467689) | |
| 446-707, gnl|galGal2|chr13 (9918982-9918793) | |
| 446-707, gnl|hg17|chr5 (158056522-158056714) | |
| 446-707, gnl|Hg17|chr5 (158056781-158056522) | |
| 446-707, gnl|loxAfr1|scaffold_78850 (3249-3438) | |
| 446-707, gnl|mm7|chr11 (44963763-44963570) | |
| 446-707, gnl|Mm7|chr11 (44963509-44963761) | |
| 446-707, gnl|monDom2|scaffold_6 (46466821-46466631) | |
| 446-707, gnl|oryCun1|scaffold_207474 (295938-295745) | |
| 446-707, gnl|panTro1|chr4 (165231648-165231840) | |
| 446-707, gnl|rheMac2|chr6 (155104898-155105090) | |
| 446-707, gnl|rn3|chr10 (30166083-30165895) | |
| 446-707, gnl|tetNig1|chr1 (2971936-2972174) | |
| 446-707, gnl|xenTro1|scaffold_669 (300032-299855) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 190-427, gnl|bosTau2|chr7 (47343816-47343577) | |
| 190-427, gnl|Hg17|chr5 (158057020-158056777) | |
| 190-427, gnl|Mm7|chr11 (44963279-44963509) | |
| 446-707, gnl|bosTau2|chr7 (47343583-47343322) | |
| 446-707, gnl|canFam2|chr4 (54967233-54967041) | |
| 446-707, gnl|danRer3|chr14 (58938344-58938629) | |
| 446-707, gnl|dasNov1|scaffold_44 (255714-255905) | |
| 446-707, gnl|echTel1|scaffold_312022 (44472-44664) | |
| 446-707, gnl|fr1|chrUn (141467441-141467689) | |
| 446-707, gnl|galGal2|chr13 (9918982-9918793) | |
| 446-707, gnl|hg17|chr5 (158056522-158056714) | |
| 446-707, gnl|Hg17|chr5 (158056781-158056522) | |
| 446-707, gnl|loxAfr1|scaffold_78850 (3249-3438) | |
| 446-707, gnl|mm7|chr11 (44963763-44963570) | |
| 446-707, gnl|Mm7|chr11 (44963509-44963761) | |
| 446-707, gnl|monDom2|scaffold_6 (46466821-46466631) | |
| 446-707, gnl|oryCun1|scaffold_207474 (295938-295745) | |
| 446-707, gnl|panTro1|chr4 (165231648-165231840) | |
| 446-707, gnl|rheMac2|chr6 (155104898-155105090) | |
| 446-707, gnl|rn3|chr10 (30166083-30165895) | |
| 446-707, gnl|tetNig1|chr1 (2971936-2972174) | |
| 446-707, gnl|xenTro1|scaffold_669 (300032-299855) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.390549) | |
| mgp (0.230681) | |
| fat (0.147427) |