Non-Coding RNA Search

Ss1.1-Pig4-TMW8052F12.3

Sequence:


               
               CTCCCGGAGGGGCGACAGGCCGAGAGAGCGGCGCCCCGGCCTGGCGCCGAGCCTGAGCCC
GCCGGACGGGAGGCGGCCCAGCCGCGGGCTCGGCCTCGGCCCCAGCCCCGCCAGCATGGC
CGGCCGGACCGTGCGGGCCGAGACCCGGAGCCGGGCCAAGGATGACATCAAGAAGGTGAT
GGCGACCATCGAGAAGGTCCGGAGATGGGAGAAGCGCTGGGTGACTGTGGGTGACACTTC
CCTGCGTATCTTCAAGTGGGTGCCAGTGGTGGACCCCCAGGAAGAGGAGCGTCGGAGGGC
AGGTGGCGGCGCAGAGCGATCCCGAGGCCGCGAGCGGAGGGGCAGGGGCGCCAGTCCCCG
AGGGGGGGGCCCTCTCATCCTGCTCGATCTCAACGATGAGAACAGTAACCAGAGCTTCCA
TTCAGAAGGCTCCCTGCAAAAGGGCACGGAGCCCAGCCCTGGGGGCACCCCCCAGCCCAG
CCGCCCTGTGTCACCTGCTGGACCACCGGAAGGGGTCCCTGAGGATGCTCAGCCCCCACA
GCTGGGCCAGGAGAGAGATCCTGGGGGCATACCTGCAGGCGGCACGGATGAACCCCCGAT
GCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTGGAGGCTGAGGCCCCTGAAGCTTACCC
CGTCTTTGAGCCAGTGCCACCTGTCCCCGAGGCAGCCCAGGGTGATACAGAGGACACGGA
GGGCGCCCCCCCACTCAAGCGCATCTGCCCAAATGCCCCTGACCCCTGAGAAGCCGGCCT
GCCTTGTCCTGTTGCCCCAGGGGGTCCCTTTGGCTTTTTACAAATAAAGACCCTTTTGTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCGGAGGGGCGACAGGCCGAGAGAGCGGCGCCCCGGCCTGGCGCCGAGCCTGAGCCC
GCCGGACGGGAGGCGGCCCAGCCGCGGGCTCGGCCTCGGCCCCAGCCCCGCCAGCATGGC
CGGCCGGACCGTGCGGGCCGAGACCCGGAGCCGGGCCAAGGATGACATCAAGAAGGTGAT
GGCGACCATCGAGAAGGTCCGGAGATGGGAGAAGCGCTGGGTGACTGTGGGTGACACTTC
CCTGCGTATCTTCAAGTGGGTGCCAGTGGTGGACCCCCAGGAAGAGGAGCGTCGGAGGGC
AGGTGGCGGCGCAGAGCGATCCCGAGGCCGCGAGCGGAGGGGCAGGGGCGCCAGTCCCCG
AGGGGGGGGCCCTCTCATCCTGCTCGATCTCAACGATGAGAACAGTAACCAGAGCTTCCA
TTCAGAAGGCTCCCTGCAAAAGGGCACGGAGCCCAGCCCTGGGGGCACCCCCCAGCCCAG
CCGCCCTGTGTCACCTGCTGGACCACCGGAAGGGGTCCCTGAGGATGCTCAGCCCCCACA
GCTGGGCCAGGAGAGAGATCCTGGGGGCATACCTGCAGGCGGCACGGATGAACCCCCGAT
GCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTGGAGGCTGAGGCCCCTGAAGCTTACCC
CGTCTTTGAGCCAGTGCCACCTGTCCCCGAGGCAGCCCAGGGTGATACAGAGGACACGGA
GGGCGCCCCCCCACTCAAGCGCATCTGCCCAAATGCCCCTGACCCCTGAGAAGCCGGCCT
GCCTTGTCCTGTTGCCCCAGGGGGTCCCTTTGGCTTTTTACAAATAAAGACCCTTTTGTA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WUZ0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WUZ0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               437-593, - strand, RNAz p=0.783043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-593, - strand, RNAz p=0.783043

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               112-643, gnl|bosTau2|chr16 (20669329-20669869)
               

               
               112-643, gnl|Hg17|chr16 (30812770-30807682)
               

               
               112-643, gnl|Mm7|chr7 (123805089-123802285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-643, gnl|bosTau2|chr16 (20669329-20669869)
               

               
               112-643, gnl|Hg17|chr16 (30812770-30807682)
               

               
               112-643, gnl|Mm7|chr7 (123805089-123802285)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	112-643, gnl\|bosTau2\|chr16 (20669329-20669869)
	112-643, gnl\|Hg17\|chr16 (30812770-30807682)
	112-643, gnl\|Mm7\|chr7 (123805089-123802285)

	nco (0.161734)
	cag (0.151194)
	hlv (0.139256)
	cly (0.120642)
	ecc (0.115035)
	nbm (0.0993246)