Ss1.1-Pig4-TMW8052F14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCCTTTCTGAACTACACACGGACCCTCAGGTTTGATGAAGATAAAGGATTCTGGTGCCA GGGACTGGAAGGTGGCAAGACTCGTTGTCTAGGCAAGAGCAAAGGCCGGAGGTACCCAGA TATGGACACTGAGTCTCGCCTTTTCCTTACGGATTTTTTCCGGAACCACAATTTGGAGCT GTCAAAGCTGCTGAGCCGGCTTGGCCAGCCAGTGCCCTCATGGCTTCGGGAAGAACTGCA GCATTCCAGTCTGGGCTGATGTACCAGCCTCTCTCATACCAGCAAAAGCCCCCTGCTTCC TTAGGGGCAAGCCCAGAGCAGGGCCCACAAGGGGCATCAGAGTGGCCTGGCCCCTCCCCC TTCTACCTCAGTGGCCTCCAGGCCTGGGATGGCTGAGAAGGGAAGGGCATCCCTTTCCCA TAGCTCTGGGGTTTAATAAAGGGGCTTCCCTTGATACCCCACAACATGGTACTAGGCACC TTTGGCCCATGGTAGGTGGGGGTAATGACAGGGTCCAGGCAGGATGCAGAGGCATGTATT AATCCAGTGATTTCCCTCTTCATCTCCAGCAGTGTATCCATCTGTACTGGCTATGGGAGG GACCCCCTTACTGTGGGATCAATGGGATCTACCTGTGGCCTGGCCTCACTAACGTCATTC ACATTGAATGGGAATGAGGTCGGACAGTGGCTCATAGAGCTGAGTATGAGCCCTAGCTAT GGGCTAAAAATTACCTTAATAAACATCCTTATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCCTTTCTGAACTACACACGGACCCTCAGGTTTGATGAAGATAAAGGATTCTGGTGCCA GGGACTGGAAGGTGGCAAGACTCGTTGTCTAGGCAAGAGCAAAGGCCGGAGGTACCCAGA TATGGACACTGAGTCTCGCCTTTTCCTTACGGATTTTTTCCGGAACCACAATTTGGAGCT GTCAAAGCTGCTGAGCCGGCTTGGCCAGCCAGTGCCCTCATGGCTTCGGGAAGAACTGCA GCATTCCAGTCTGGGCTGATGTACCAGCCTCTCTCATACCAGCAAAAGCCCCCTGCTTCC TTAGGGGCAAGCCCAGAGCAGGGCCCACAAGGGGCATCAGAGTGGCCTGGCCCCTCCCCC TTCTACCTCAGTGGCCTCCAGGCCTGGGATGGCTGAGAAGGGAAGGGCATCCCTTTCCCA TAGCTCTGGGGTTTAATAAAGGGGCTTCCCTTGATACCCCACAACATGGTACTAGGCACC TTTGGCCCATGGTAGGTGGGGGTAATGACAGGGTCCAGGCAGGATGCAGAGGCATGTATT AATCCAGTGATTTCCCTCTTCATCTCCAGCAGTGTATCCATCTGTACTGGCTATGGGAGG GACCCCCTTACTGTGGGATCAATGGGATCTACCTGTGGCCTGGCCTCACTAACGTCATTC ACATTGAATGGGAATGAGGTCGGACAGTGGCTCATAGAGCTGAGTATGAGCCCTAGCTAT GGGCTAAAAATTACCTTAATAAACATCCTTATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 352-541, - strand, RNAz p=0.995076 | |
| 629-756, + strand, RNAz p=0.987699 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 352-541, - strand, RNAz p=0.995076 | |
| 629-756, + strand, RNAz p=0.987699 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003635, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 24-127, gnl|bosTau2|chr7 (39128663-39128766) | |
| 24-127, gnl|canFam2|chr4 (61789637-61789539) | |
| 24-127, gnl|danRer3|chr17 (18615671-18615762) | |
| 24-127, gnl|dasNov1|scaffold_34836 (4621-4523) | |
| 24-127, gnl|echTel1|scaffold_321352 (172985-172900) | |
| 24-127, gnl|fr1|chrUn (296625255-296625167) | |
| 24-127, gnl|galGal2|chr13 (12057968-12057878) | |
| 24-127, gnl|hg17|chr5 (149911493-149911591) | |
| 24-127, gnl|Hg17|chr5 (149911501-149911604) | |
| 24-127, gnl|loxAfr1|scaffold_109835 (7667-7583) | |
| 24-127, gnl|mm7|chr18 (61079521-61079424) | |
| 24-127, gnl|Mm7|chr18 (61079512-61079409) | |
| 24-127, gnl|monDom2|scaffold_6 (56587426-56587328) | |
| 24-127, gnl|oryCun1|scaffold_211537 (125605-125507) | |
| 24-127, gnl|panTro1|chr4 (156861458-156861556) | |
| 24-127, gnl|rheMac2|chr6 (147023905-147024003) | |
| 24-127, gnl|rn3|chr18 (56712948-56712851) | |
| 24-127, gnl|tetNig1|chr1 (502099-502013) | |
| 24-127, gnl|xenTro1|scaffold_261 (213731-213633) | |
| 132-324, gnl|bosTau2|chr28 (22941408-22941217) | |
| 132-324, gnl|Hg17|chr10 (75232342-75232150) | |
| 132-324, gnl|Mm7|chr14 (18380919-18380724) | |
| 352-756, gnl|bosTau2|chr28 (22941213-22940804) | |
| 352-756, gnl|Hg17|chr10 (75232123-75231681) | |
| 352-756, gnl|Mm7|chr14 (18380702-18380288) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-127, gnl|bosTau2|chr7 (39128663-39128766) | |
| 24-127, gnl|canFam2|chr4 (61789637-61789539) | |
| 24-127, gnl|danRer3|chr17 (18615671-18615762) | |
| 24-127, gnl|dasNov1|scaffold_34836 (4621-4523) | |
| 24-127, gnl|echTel1|scaffold_321352 (172985-172900) | |
| 24-127, gnl|fr1|chrUn (296625255-296625167) | |
| 24-127, gnl|galGal2|chr13 (12057968-12057878) | |
| 24-127, gnl|hg17|chr5 (149911493-149911591) | |
| 24-127, gnl|Hg17|chr5 (149911501-149911604) | |
| 24-127, gnl|loxAfr1|scaffold_109835 (7667-7583) | |
| 24-127, gnl|mm7|chr18 (61079521-61079424) | |
| 24-127, gnl|Mm7|chr18 (61079512-61079409) | |
| 24-127, gnl|monDom2|scaffold_6 (56587426-56587328) | |
| 24-127, gnl|oryCun1|scaffold_211537 (125605-125507) | |
| 24-127, gnl|panTro1|chr4 (156861458-156861556) | |
| 24-127, gnl|rheMac2|chr6 (147023905-147024003) | |
| 24-127, gnl|rn3|chr18 (56712948-56712851) | |
| 24-127, gnl|tetNig1|chr1 (502099-502013) | |
| 24-127, gnl|xenTro1|scaffold_261 (213731-213633) | |
| 132-324, gnl|bosTau2|chr28 (22941408-22941217) | |
| 132-324, gnl|Hg17|chr10 (75232342-75232150) | |
| 132-324, gnl|Mm7|chr14 (18380919-18380724) | |
| 352-756, gnl|bosTau2|chr28 (22941213-22940804) | |
| 352-756, gnl|Hg17|chr10 (75232123-75231681) | |
| 352-756, gnl|Mm7|chr14 (18380702-18380288) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ece (0.229305) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nca (0.136874) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| fty (0.17584) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nca (0.136874) |