Ss1.1-Pig4-TMW8052F14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGACCTTAGTCCCCAACTTCACCTTCAACCTGAGCTTCTCGGGCAAGTTCTATCATAC TGGGACAGAGGAGGAGGATGCAGGGGACGACATGCTGCTGAAGCACCGCCAGGAGTTTTG GTGGTTCCCCCACATGTGGAGTCACATGCAGCCACACCTGTTCCACAATCGCTCCGTGCT GGCTGACCAGATGAGGCTCAACAAACAGTTCGCTTTGGAGCATGGGATTCCCACGGATCT GGGGTATGCTGTGGCCCCCCACCACTCCGGCGTGTACCCCATCCACACACAGCTCTATGA GGCCTGGAAATCTGTGTGGGGCATCCAGGTGACCAGCACTGAGGAGTATCCCCATCTCCG CCCAGCCCGCTACCGCCGTGGCTTCATTCACAATGGCATTATGGTGCTGCCACGGCAGAC ATGTGGCCTCTTCACTCACACAATCTTCTATAATGAGTATCCTGGAGGCTCTCGTGAACT AGATCGGAGCATCCGAGGTGGAGAACTCTTTCTGACAGTGCTGCTTAATCCGATCAGCAT CTTTATGACCCATCTGTCTAATTATGGAAATGATCGGCTGGGCCTGTACACATTTGAGAG CCTGGTGCGCTTTCTCCAGTGCTGGACACGGCTGCGCCTGCAGACCCTTCCTCCTGTCCC TCTTGCACGAAAGTACTTTGACCTCTTCCCTCAAGAGCGAAGCCCTCTTTGGCAGAATCC CTGTGATGACAAGAGGCACAAAGATATCTGGTCGAAGGAGAAAACCTGTGATCGGCTCCC CAAGTTCCTCATTGTGGGACCCCAGAAGACAGGAACCACGGCTATTCACTTTTTCCTGAG CCTGCACCCAGCTGTGACTAGCAGCTTCCCAAGCCCCAGCACCTTTGAGGAGATTCAGTT CTTCAACGGCCCCAATTACCACAAGGGCATTGACTGGTACATGGATTTCTTCCCTGTTCC TTCTAATGCCAGCACTGACTTCCTGTTTGAAAAAAGTGCCACCTACTTTGACTCAGAGGT TGTACCACGGCGGGGGGCTGCTCTCCTGCCACGAGCCAAGATCATCACTGTGCTCACCAA CCCTGCTGATAGGGCCTACTCCTGGTACCAGCACCAGCGAGCACATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGACCTTAGTCCCCAACTTCACCTTCAACCTGAGCTTCTCGGGCAAGTTCTATCATAC TGGGACAGAGGAGGAGGATGCAGGGGACGACATGCTGCTGAAGCACCGCCAGGAGTTTTG GTGGTTCCCCCACATGTGGAGTCACATGCAGCCACACCTGTTCCACAATCGCTCCGTGCT GGCTGACCAGATGAGGCTCAACAAACAGTTCGCTTTGGAGCATGGGATTCCCACGGATCT GGGGTATGCTGTGGCCCCCCACCACTCCGGCGTGTACCCCATCCACACACAGCTCTATGA GGCCTGGAAATCTGTGTGGGGCATCCAGGTGACCAGCACTGAGGAGTATCCCCATCTCCG CCCAGCCCGCTACCGCCGTGGCTTCATTCACAATGGCATTATGGTGCTGCCACGGCAGAC ATGTGGCCTCTTCACTCACACAATCTTCTATAATGAGTATCCTGGAGGCTCTCGTGAACT AGATCGGAGCATCCGAGGTGGAGAACTCTTTCTGACAGTGCTGCTTAATCCGATCAGCAT CTTTATGACCCATCTGTCTAATTATGGAAATGATCGGCTGGGCCTGTACACATTTGAGAG CCTGGTGCGCTTTCTCCAGTGCTGGACACGGCTGCGCCTGCAGACCCTTCCTCCTGTCCC TCTTGCACGAAAGTACTTTGACCTCTTCCCTCAAGAGCGAAGCCCTCTTTGGCAGAATCC CTGTGATGACAAGAGGCACAAAGATATCTGGTCGAAGGAGAAAACCTGTGATCGGCTCCC CAAGTTCCTCATTGTGGGACCCCAGAAGACAGGAACCACGGCTATTCACTTTTTCCTGAG CCTGCACCCAGCTGTGACTAGCAGCTTCCCAAGCCCCAGCACCTTTGAGGAGATTCAGTT CTTCAACGGCCCCAATTACCACAAGGGCATTGACTGGTACATGGATTTCTTCCCTGTTCC TTCTAATGCCAGCACTGACTTCCTGTTTGAAAAAAGTGCCACCTACTTTGACTCAGAGGT TGTACCACGGCGGGGGGCTGCTCTCCTGCCACGAGCCAAGATCATCACTGTGCTCACCAA CCCTGCTGATAGGGCCTACTCCTGGTACCAGCACCAGCGAGCACATGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 217-406, gnl|bosTau2|chr28 (22944509-22944320) | |
| 217-406, gnl|canFam2|chr4 (27449125-27449287) | |
| 217-406, gnl|danRer3|chrUn (160711836-160711691) | |
| 217-406, gnl|dasNov1|scaffold_8314 (77809-77971) | |
| 217-406, gnl|echTel1|scaffold_321352 (175621-175783) | |
| 217-406, gnl|fr1|chrUn (296629338-296629483) | |
| 217-406, gnl|galGal2|chr6 (15053805-15053657) | |
| 217-406, gnl|hg17|chr10 (75236035-75236197) | |
| 217-406, gnl|Hg17|chr10 (75236239-75236050) | |
| 217-406, gnl|loxAfr1|scaffold_72264 (4474-4312) | |
| 217-406, gnl|mm7|chr14 (18384615-18384777) | |
| 217-406, gnl|Mm7|chr14 (18384819-18384630) | |
| 217-406, gnl|monDom2|scaffold_14 (1788102-1788265) | |
| 217-406, gnl|oryCun1|scaffold_213487 (82208-82049) | |
| 217-406, gnl|panTro1|chr8 (76441466-76441628) | |
| 217-406, gnl|rheMac2|chr9 (63213367-63213205) | |
| 217-406, gnl|rn3|chr15 (3794503-3794342) | |
| 217-406, gnl|tetNig1|chrUn_random (120565157-120565302) | |
| 217-406, gnl|xenTro1|scaffold_507 (179213-179062) | |
| 529-715, gnl|bosTau2|chr28 (22943804-22943618) | |
| 529-715, gnl|Hg17|chr10 (75235537-75235351) | |
| 529-715, gnl|Mm7|chr14 (18383921-18383735) | |
| 936-1111, gnl|bosTau2|chr28 (22942550-22942375) | |
| 936-1111, gnl|canFam2|chr4 (27447257-27447448) | |
| 936-1111, gnl|danRer3|chrUn (160719455-160719269) | |
| 936-1111, gnl|dasNov1|scaffold_34836 (9598-9788) | |
| 936-1111, gnl|echTel1|scaffold_321352 (173775-173966) | |
| 936-1111, gnl|fr1|chrUn (296626913-296627099) | |
| 936-1111, gnl|galGal2|chr6 (15063044-15062848) | |
| 936-1111, gnl|hg17|chr10 (75233337-75233528) | |
| 936-1111, gnl|Hg17|chr10 (75233513-75233338) | |
| 936-1111, gnl|loxAfr1|scaffold_17306 (17337-17529) | |
| 936-1111, gnl|mm7|chr14 (18381835-18382026) | |
| 936-1111, gnl|Mm7|chr14 (18382011-18381836) | |
| 936-1111, gnl|monDom2|scaffold_14 (1786376-1786586) | |
| 936-1111, gnl|oryCun1|scaffold_213487 (84519-84328) | |
| 936-1111, gnl|panTro1|chr8 (76438771-76438962) | |
| 936-1111, gnl|rheMac2|chr9 (63216682-63216491) | |
| 936-1111, gnl|rn3|chr15 (3796997-3796806) | |
| 936-1111, gnl|tetNig1|chrUn_random (120563853-120564092) | |
| 936-1111, gnl|xenTro1|scaffold_507 (195052-194861) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 217-406, gnl|bosTau2|chr28 (22944509-22944320) | |
| 217-406, gnl|canFam2|chr4 (27449125-27449287) | |
| 217-406, gnl|danRer3|chrUn (160711836-160711691) | |
| 217-406, gnl|dasNov1|scaffold_8314 (77809-77971) | |
| 217-406, gnl|echTel1|scaffold_321352 (175621-175783) | |
| 217-406, gnl|fr1|chrUn (296629338-296629483) | |
| 217-406, gnl|galGal2|chr6 (15053805-15053657) | |
| 217-406, gnl|hg17|chr10 (75236035-75236197) | |
| 217-406, gnl|Hg17|chr10 (75236239-75236050) | |
| 217-406, gnl|loxAfr1|scaffold_72264 (4474-4312) | |
| 217-406, gnl|mm7|chr14 (18384615-18384777) | |
| 217-406, gnl|Mm7|chr14 (18384819-18384630) | |
| 217-406, gnl|monDom2|scaffold_14 (1788102-1788265) | |
| 217-406, gnl|oryCun1|scaffold_213487 (82208-82049) | |
| 217-406, gnl|panTro1|chr8 (76441466-76441628) | |
| 217-406, gnl|rheMac2|chr9 (63213367-63213205) | |
| 217-406, gnl|rn3|chr15 (3794503-3794342) | |
| 217-406, gnl|tetNig1|chrUn_random (120565157-120565302) | |
| 217-406, gnl|xenTro1|scaffold_507 (179213-179062) | |
| 529-715, gnl|bosTau2|chr28 (22943804-22943618) | |
| 529-715, gnl|Hg17|chr10 (75235537-75235351) | |
| 529-715, gnl|Mm7|chr14 (18383921-18383735) | |
| 936-1111, gnl|bosTau2|chr28 (22942550-22942375) | |
| 936-1111, gnl|canFam2|chr4 (27447257-27447448) | |
| 936-1111, gnl|danRer3|chrUn (160719455-160719269) | |
| 936-1111, gnl|dasNov1|scaffold_34836 (9598-9788) | |
| 936-1111, gnl|echTel1|scaffold_321352 (173775-173966) | |
| 936-1111, gnl|fr1|chrUn (296626913-296627099) | |
| 936-1111, gnl|galGal2|chr6 (15063044-15062848) | |
| 936-1111, gnl|hg17|chr10 (75233337-75233528) | |
| 936-1111, gnl|Hg17|chr10 (75233513-75233338) | |
| 936-1111, gnl|loxAfr1|scaffold_17306 (17337-17529) | |
| 936-1111, gnl|mm7|chr14 (18381835-18382026) | |
| 936-1111, gnl|Mm7|chr14 (18382011-18381836) | |
| 936-1111, gnl|monDom2|scaffold_14 (1786376-1786586) | |
| 936-1111, gnl|oryCun1|scaffold_213487 (84519-84328) | |
| 936-1111, gnl|panTro1|chr8 (76438771-76438962) | |
| 936-1111, gnl|rheMac2|chr9 (63216682-63216491) | |
| 936-1111, gnl|rn3|chr15 (3796997-3796806) | |
| 936-1111, gnl|tetNig1|chrUn_random (120563853-120564092) | |
| 936-1111, gnl|xenTro1|scaffold_507 (195052-194861) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| pla (0.133672) | |
| cty (0.10408) |