Ss1.1-Pig4-TMW8052F16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTGAGGTAGTTTTAGTCGCTTTTAAGAAATACTCCCATAAGTGGCTAAGC ATTGGAAGAGGAGAAAGAACTCGTCGGTCGGTTGTTAAAGCAGAGGTGGAAGAGAGACCC GCTCTATAGCGTGACTCCTCTAGAAATTTAAATATATATACAAAAGCCAGAGTATTTTAA TAAATCCCTAAAATGTCGAGATTTGTACAAGATCTCAGCAAAGCAATGTCTCAAGATGGC GCTTCTCAGTTCCAAGAAGTCATTCGGCAGGAGCTAGAATTATCTGTGAAGAAGGAACTA GAAAAGATACTTACCACGGCACCATCACATGAGTTTGAGCACACTAAAAAAGACCTTGAT GGATTTCGGAAGCTATTTCATAGATTCTTGCAAGAAAAGGGACCTTCTGTGGACTGGGGA AAAATCCAGAGACCTCCAGAAGATTCGATTCAACCCTATGAAAAGATAAAGGCCCGAGGC TTACCTGATAACATATCTTCTGTGCTGAACAAGCTGGTGGTGGTGAAACTCAATGGTGGT TTGGGAACCAGCATGGGCTGCAAAGGCCCGAAGAGTCTGATTGGTGTGAGAAATGAGAAT ACCTTTTTGGATCTGACTGTTCAGCAAATCGAACATTTGAACAAAACCTACAATACTGAT GTCCCTCTTGTTCTGATGAACTCTTTTAACACAGATGAAGATACAAAAAAAATACTACAG AAGTATAATCACTGTCGTGTGAAAATCTACACTTTTAATCAAAGCAGGTACCCGAGGATT AATAAGGAGTCTTTACTGCCTGTGGCAAAGGATGTATCATACTCAGGGGAAAATACAGAA GCTTGGTACCCTCCGGGTCATGGAGATATTTACGCAAGTTTCTACAACTCTGGTTTGCTT GATACCTTTATAGGTGAAGGCAAAGAGTATATTTTTGTGTCCAACATAGATAATCTGGGC GCCACAGTGGATCTTTATATTCTTAATCATTTAATGAACCCACCCAATGGAAAACCCTGT GAATTTGTCATGGAAGTCACAAATAAGACACGTGCAGATGTAAAGGGTGGGACACTTACT CAGTACGAAGGCAAATTGAGACTGGTGGAAATTGCCCAAGTGCCAAAACCACACGTTGAT GAGTTCAAGTCTGTATCAAAATTCAAAATATTTAACACAAACAACCTATGGATCTCTCTT GCAGCAGTTAAAAGACTGCAGGAGCAGAATGCTATTGACATGGAAATCATTGTGAATCCA AAGACTTTGGATGGAGGCCTAAATGTCATTCAGCTAGAAACTGCAGTAGGGGCTGCCATT AAAAGTTTCGAGAACTCTCTAGGTATTAATGTTCCGAGGAGCCGTTTTCTGCCTGTAAAA ACCACATCAGATCTTTTGCTTGTGATGTCAAACCTCTATAGCCTTAATGCAGGATCTTTG ACAATGAGTGAGAAGCGAGAATTTCCTACCGTGCCCTTGGTTAAATTAGGCAGTTCTTTT ACAAAGGTTCAGGATTACCTAAGGAGATTTGAAAGTATACCAGATATGCTTGAATTGGAT CACCTCACAGTTTCAGGAGATGTGACATTTGGCAAGAATGTTTCATTAAAGGGAACAGTT ATCATCATTGCAAATCATGGTGACCGAATTGACATCCCACCTGGAGCAGTATTAGAAAAC AAGATTGTATCCGGGAACCTTCGTATCTTGGACCACTGAAATGGAAAATACCATGTACAC TTTATACTAATTATGGGCTGAATGGTTTCTTACAATTACATGTTCTCTAGGATTCTAAAA TAGGCAGGTGCTTTACTCTGTTACCATACCCTGCAGTGTTAATTTCTAAAGTAGAGTTTT CTGCAGTATGCTTTTAGTCTAAGAAAAGCATAGGTGGAAGCAATACTTTTCTTTTTCAAA GAGGATCCTGAAAGTTAATTCATCTTAAAGTGCAATATTGTTTAATCTTAAAACTGGGGC AGCTCTGCTGGAAAATCTTTTAACGGAGGCCTCAATAATGATCACTTTGAACTGCTTGTG ATTTCAGAAATAAAGCTGTGAAGCAATAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTGAGGTAGTTTTAGTCGCTTTTAAGAAATACTCCCATAAGTGGCTAAGC ATTGGAAGAGGAGAAAGAACTCGTCGGTCGGTTGTTAAAGCAGAGGTGGAAGAGAGACCC GCTCTATAGCGTGACTCCTCTAGAAATTTAAATATATATACAAAAGCCAGAGTATTTTAA TAAATCCCTAAAATGTCGAGATTTGTACAAGATCTCAGCAAAGCAATGTCTCAAGATGGC GCTTCTCAGTTCCAAGAAGTCATTCGGCAGGAGCTAGAATTATCTGTGAAGAAGGAACTA GAAAAGATACTTACCACGGCACCATCACATGAGTTTGAGCACACTAAAAAAGACCTTGAT GGATTTCGGAAGCTATTTCATAGATTCTTGCAAGAAAAGGGACCTTCTGTGGACTGGGGA AAAATCCAGAGACCTCCAGAAGATTCGATTCAACCCTATGAAAAGATAAAGGCCCGAGGC TTACCTGATAACATATCTTCTGTGCTGAACAAGCTGGTGGTGGTGAAACTCAATGGTGGT TTGGGAACCAGCATGGGCTGCAAAGGCCCGAAGAGTCTGATTGGTGTGAGAAATGAGAAT ACCTTTTTGGATCTGACTGTTCAGCAAATCGAACATTTGAACAAAACCTACAATACTGAT GTCCCTCTTGTTCTGATGAACTCTTTTAACACAGATGAAGATACAAAAAAAATACTACAG AAGTATAATCACTGTCGTGTGAAAATCTACACTTTTAATCAAAGCAGGTACCCGAGGATT AATAAGGAGTCTTTACTGCCTGTGGCAAAGGATGTATCATACTCAGGGGAAAATACAGAA GCTTGGTACCCTCCGGGTCATGGAGATATTTACGCAAGTTTCTACAACTCTGGTTTGCTT GATACCTTTATAGGTGAAGGCAAAGAGTATATTTTTGTGTCCAACATAGATAATCTGGGC GCCACAGTGGATCTTTATATTCTTAATCATTTAATGAACCCACCCAATGGAAAACCCTGT GAATTTGTCATGGAAGTCACAAATAAGACACGTGCAGATGTAAAGGGTGGGACACTTACT CAGTACGAAGGCAAATTGAGACTGGTGGAAATTGCCCAAGTGCCAAAACCACACGTTGAT GAGTTCAAGTCTGTATCAAAATTCAAAATATTTAACACAAACAACCTATGGATCTCTCTT GCAGCAGTTAAAAGACTGCAGGAGCAGAATGCTATTGACATGGAAATCATTGTGAATCCA AAGACTTTGGATGGAGGCCTAAATGTCATTCAGCTAGAAACTGCAGTAGGGGCTGCCATT AAAAGTTTCGAGAACTCTCTAGGTATTAATGTTCCGAGGAGCCGTTTTCTGCCTGTAAAA ACCACATCAGATCTTTTGCTTGTGATGTCAAACCTCTATAGCCTTAATGCAGGATCTTTG ACAATGAGTGAGAAGCGAGAATTTCCTACCGTGCCCTTGGTTAAATTAGGCAGTTCTTTT ACAAAGGTTCAGGATTACCTAAGGAGATTTGAAAGTATACCAGATATGCTTGAATTGGAT CACCTCACAGTTTCAGGAGATGTGACATTTGGCAAGAATGTTTCATTAAAGGGAACAGTT ATCATCATTGCAAATCATGGTGACCGAATTGACATCCCACCTGGAGCAGTATTAGAAAAC AAGATTGTATCCGGGAACCTTCGTATCTTGGACCACTGAAATGGAAAATACCATGTACAC TTTATACTAATTATGGGCTGAATGGTTTCTTACAATTACATGTTCTCTAGGATTCTAAAA TAGGCAGGTGCTTTACTCTGTTACCATACCCTGCAGTGTTAATTTCTAAAGTAGAGTTTT CTGCAGTATGCTTTTAGTCTAAGAAAAGCATAGGTGGAAGCAATACTTTTCTTTTTCAAA GAGGATCCTGAAAGTTAATTCATCTTAAAGTGCAATATTGTTTAATCTTAAAACTGGGGC AGCTCTGCTGGAAAATCTTTTAACGGAGGCCTCAATAATGATCACTTTGAACTGCTTGTG ATTTCAGAAATAAAGCTGTGAAGCAATAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 221-1965, + strand, RNAz p=0.639709 | |
| 447-633, + strand, RNAz p=0.891954 | |
| 844-963, + strand, RNAz p=0.960025 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 221-1965, + strand, RNAz p=0.639709 | |
| 447-633, + strand, RNAz p=0.891954 | |
| 844-963, + strand, RNAz p=0.960025 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001001521, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 202-338, gnl|bosTau2|chr11 (43440150-43440014) | |
| 202-338, gnl|Hg17|chr2 (63995080-63995217) | |
| 202-338, gnl|Mm7|chr11 (21306425-21306289) | |
| 447-633, gnl|bosTau2|chr11 (43412978-43412792) | |
| 447-633, gnl|Hg17|chr2 (64021250-64021436) | |
| 447-633, gnl|Mm7|chr11 (21285820-21285634) | |
| 766-1066, gnl|bosTau2|chr11 (43410573-43410273) | |
| 766-1066, gnl|canFam2|chr10 (66741228-66741570) | |
| 766-1066, gnl|danRer3|chr17 (15246847-15246502) | |
| 766-1066, gnl|dasNov1|scaffold_4002 (65618-65954) | |
| 766-1066, gnl|echTel1|scaffold_291413 (88091-87754) | |
| 766-1066, gnl|fr1|chrUn (218620440-218620126) | |
| 766-1066, gnl|galGal2|chr3 (7621538-7621213) | |
| 766-1066, gnl|hg17|chr2 (64024341-64024676) | |
| 766-1066, gnl|Hg17|chr2 (64024371-64024672) | |
| 766-1066, gnl|loxAfr1|scaffold_4005 (62970-63307) | |
| 766-1066, gnl|mm7|chr11 (21283175-21282840) | |
| 766-1066, gnl|Mm7|chr11 (21283142-21282842) | |
| 766-1066, gnl|monDom2|scaffold_1 (29144524-29144853) | |
| 766-1066, gnl|oryCun1|scaffold_198156 (84758-85095) | |
| 766-1066, gnl|panTro1|chr12 (66249527-66249863) | |
| 766-1066, gnl|rheMac2|chr13 (64082993-64083329) | |
| 766-1066, gnl|rn3|chr14 (102101270-102100935) | |
| 766-1066, gnl|tetNig1|chrUn_random (84175123-84174821) | |
| 766-1066, gnl|xenTro1|scaffold_321 (908005-907685) | |
| 1262-1508, gnl|bosTau2|chr11 (43408453-43408207) | |
| 1262-1508, gnl|Hg17|chr2 (64026185-64026431) | |
| 1262-1508, gnl|Mm7|chr11 (21281124-21280878) | |
| 1610-2068, gnl|bosTau2|chr11 (43404010-43403550) | |
| 1610-2068, gnl|Hg17|chr2 (64029903-64030347) | |
| 1610-2068, gnl|Mm7|chr11 (21274140-21273692) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 202-338, gnl|bosTau2|chr11 (43440150-43440014) | |
| 202-338, gnl|Hg17|chr2 (63995080-63995217) | |
| 202-338, gnl|Mm7|chr11 (21306425-21306289) | |
| 447-633, gnl|bosTau2|chr11 (43412978-43412792) | |
| 447-633, gnl|Hg17|chr2 (64021250-64021436) | |
| 447-633, gnl|Mm7|chr11 (21285820-21285634) | |
| 766-1066, gnl|bosTau2|chr11 (43410573-43410273) | |
| 766-1066, gnl|canFam2|chr10 (66741228-66741570) | |
| 766-1066, gnl|danRer3|chr17 (15246847-15246502) | |
| 766-1066, gnl|dasNov1|scaffold_4002 (65618-65954) | |
| 766-1066, gnl|echTel1|scaffold_291413 (88091-87754) | |
| 766-1066, gnl|fr1|chrUn (218620440-218620126) | |
| 766-1066, gnl|galGal2|chr3 (7621538-7621213) | |
| 766-1066, gnl|hg17|chr2 (64024341-64024676) | |
| 766-1066, gnl|Hg17|chr2 (64024371-64024672) | |
| 766-1066, gnl|loxAfr1|scaffold_4005 (62970-63307) | |
| 766-1066, gnl|mm7|chr11 (21283175-21282840) | |
| 766-1066, gnl|Mm7|chr11 (21283142-21282842) | |
| 766-1066, gnl|monDom2|scaffold_1 (29144524-29144853) | |
| 766-1066, gnl|oryCun1|scaffold_198156 (84758-85095) | |
| 766-1066, gnl|panTro1|chr12 (66249527-66249863) | |
| 766-1066, gnl|rheMac2|chr13 (64082993-64083329) | |
| 766-1066, gnl|rn3|chr14 (102101270-102100935) | |
| 766-1066, gnl|tetNig1|chrUn_random (84175123-84174821) | |
| 766-1066, gnl|xenTro1|scaffold_321 (908005-907685) | |
| 1262-1508, gnl|bosTau2|chr11 (43408453-43408207) | |
| 1262-1508, gnl|Hg17|chr2 (64026185-64026431) | |
| 1262-1508, gnl|Mm7|chr11 (21281124-21280878) | |
| 1610-2068, gnl|bosTau2|chr11 (43404010-43403550) | |
| 1610-2068, gnl|Hg17|chr2 (64029903-64030347) | |
| 1610-2068, gnl|Mm7|chr11 (21274140-21273692) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| lun (2.25734) | |
| sme (1.52718) | |
| mgp (0.692042) | |
| ldo (0.582016) | |
| kid (0.518941) | |
| pro (0.512033) | |
| mga (0.480615) | |
| liv (0.438853) | |
| nms (0.427716) | |
| cty (0.41632) | |
| fli (0.405762) | |
| nep (0.36785) | |
| mgm (0.360685) | |
| rec (0.346141) | |
| vin (0.332557) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| ute (0.265569) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| mas (0.210305) | |
| hea (0.204499) | |
| sin (0.174948) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (2.25734) | |
| sme (1.52718) | |
| mgp (0.692042) | |
| ldo (0.582016) | |
| kid (0.518941) | |
| pro (0.512033) | |
| mga (0.480615) | |
| liv (0.438853) | |
| nms (0.427716) | |
| cty (0.41632) | |
| fli (0.405762) | |
| nep (0.36785) | |
| mgm (0.360685) | |
| rec (0.346141) | |
| vin (0.332557) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| lin (0.291206) | |
| ute (0.265569) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| mas (0.210305) | |
| hea (0.204499) | |
| sin (0.174948) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| eje (0.0988338) |