Non-Coding RNA Search

Ss1.1-Pig4-TMW8052F17.5

Sequence:


               
               CTTTGGTCGAGATTTTTACACCTGTGTCTAGTCCTTCCCTCCAAGAGCATTAACTATTTA
AAACAAGGAACAGAGAAAACCAGAGCGGCCGCCCTGCCCTGCGCCCGCCTGTGTCCACTG
AGTGAGTAGTGCGGCCCTGCCATCCAGCCTGCCGCCCCGTTAGTGTCATAAAGTGCAGCT
TGTCTCCCTCGATCCAAAGGCCGTTTTCTCGAGGGGGCGCTGTGGGGCGTTGCTGCTGGG
GGTGAGTCTCCCCTGGGCCTCCCCAAACCAAAGGGGAAGGTGGGGAGGGGATGGCCCCCA
ACCAAAATGCTGCACCAAAGCCTGGGCCGGCGGGCACGGTCCGAGGGATGTCCTGCCGAC
CTGCTCACGAAGCCGTGGGACCGGAACTGGGGGCAGCCACCTCGTGGCCTGTGGGCGGCA
CAGGCACGCAGGCTCCTTGTGTCCGCTCTGTGCTGCCAACCAAGCGGTGGAGACAAGCGC
CTTAAAGCCTGTCCCAGCCCCGCAGGTGCGTGTGGAGTGGGCAGCTCCATGGGTGTGGTC
CCTGTGGTCCTCTGGGGGCCCGGGTGCTGCACAGGCAGAGCAGCTGGGGGCTTCCCCATG
GTGTGTGCGTCTAGGTCTTGCTTTAAAAAGTGTACAGAAATGGCACTTCCGTTTCTCCGA
TGCTTCCTGGAAGCCATAGAACTTAGGGGCTTTTTTAAAAAAATAAAGGAAAATGAAATC
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGGTCGAGATTTTTACACCTGTGTCTAGTCCTTCCCTCCAAGAGCATTAACTATTTA
AAACAAGGAACAGAGAAAACCAGAGCGGCCGCCCTGCCCTGCGCCCGCCTGTGTCCACTG
AGTGAGTAGTGCGGCCCTGCCATCCAGCCTGCCGCCCCGTTAGTGTCATAAAGTGCAGCT
TGTCTCCCTCGATCCAAAGGCCGTTTTCTCGAGGGGGCGCTGTGGGGCGTTGCTGCTGGG
GGTGAGTCTCCCCTGGGCCTCCCCAAACCAAAGGGGAAGGTGGGGAGGGGATGGCCCCCA
ACCAAAATGCTGCACCAAAGCCTGGGCCGGCGGGCACGGTCCGAGGGATGTCCTGCCGAC
CTGCTCACGAAGCCGTGGGACCGGAACTGGGGGCAGCCACCTCGTGGCCTGTGGGCGGCA
CAGGCACGCAGGCTCCTTGTGTCCGCTCTGTGCTGCCAACCAAGCGGTGGAGACAAGCGC
CTTAAAGCCTGTCCCAGCCCCGCAGGTGCGTGTGGAGTGGGCAGCTCCATGGGTGTGGTC
CCTGTGGTCCTCTGGGGGCCCGGGTGCTGCACAGGCAGAGCAGCTGGGGGCTTCCCCATG
GTGTGTGCGTCTAGGTCTTGCTTTAAAAAGTGTACAGAAATGGCACTTCCGTTTCTCCGA
TGCTTCCTGGAAGCCATAGAACTTAGGGGCTTTTTTAAAAAAATAAAGGAAAATGAAATC
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               235-336, - strand, RNAz p=0.99469
               

               
               484-623, - strand, RNAz p=0.937464

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-336, - strand, RNAz p=0.99469
               

               
               484-623, - strand, RNAz p=0.937464

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               147-727, gnl|bosTau2|chr16 (39754870-39755432)
               

               
               147-727, gnl|Hg17|chr19 (1931402-1932337)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-727, gnl|bosTau2|chr16 (39754870-39755432)
               

               
               147-727, gnl|Hg17|chr19 (1931402-1932337)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fcc (0.39557)
               

               
               eye (0.341006)
               

               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               eye (0.341006)
               

               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	235-336, - strand, RNAz p=0.99469
	484-623, - strand, RNAz p=0.937464

	147-727, gnl\|bosTau2\|chr16 (39754870-39755432)
	147-727, gnl\|Hg17\|chr19 (1931402-1932337)

	fcc (0.39557)
	eye (0.341006)
	cga (0.279096)
	nep (0.183925)
	mcp (0.170648)
	nje (0.16592)
	cag (0.151194)
	cst (0.140036)
	pla (0.133672)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)
	jej (0.0989218)