Non-Coding RNA Search

Ss1.1-Pig4-TMW8052F19.3

Sequence:


               
               CTCCTGCCCCTCACCGAGTTGAGAGAGGCGGACCGGGAGCGGAGCAGGGTCGGGATGGAG
CGTCAGGATGGACGAGGACGTGCTGACCACCCTGAAGATCCTCACCATCGGCGAGAGTGG
CGTGGGCAAACCCAGCCTGCTCTTGAGGTTCACAGATGATACTTTTGATCTAGAACTTGC
AGCAACAATAGTTGGCTAATAACAAAGAGGGGAAAACTAAATCACAGACTCCGTAATCCA
CTATACTAGAAGGCAGCTAGAACCCCAAGCCGCATTACAGGAGGAATGGCTGCCAGAAGC
GGCGGAAACTAAGCAGGCCTCCCATGGGAAGAAGTGGAGAGGATGCCACAGCTGCAGAGC
TTGGAGCCAGCAAGAGATGCTACGTGAAACTGAGAGGCCCCCCTGAGGTGCACAACCTGA
TCCCTTGTTTTTAAAAGCAAAGCACATTTCCTAAGCTAATGGCAGGAGTTTCCCTGCATC
TGGTTTGATCATAGGAAGTTGGGGAAGTGAAGATAAACAAGGAGTCACACAGACAAGAAT
TTTGCATTTGTCCGTCTTTATAGCGGTAGAGGAGACGCCTTTGCCTTGTGAAAAACCTCA
AGGCTGCCTATCTCCTTTGGCTGTTACGAAGTAAAAAACTAAATGATTCTCATGTAAAAC
CCTGAATCAAGACAAACTTTTGCTGGTGCAGAACTGAGCACTGTAGCCTTCTGCTTGAAC
CTCCTGCAAATACCGTGTTCAGGAATAGCTCAGCACTTTCAACAATGACTTAGCAAAGAG
AATCCAGCTTAAGGCCACTACCACCATTCAAGAATCAAAAAGGAAGAAATAGAAAAAGAA
CAAGTGAAGAATACTCATCAGAAAAAAATATTGCTGTAAAGAAGATGAAAACAGGACTGA
ACATTTTTTTTTTTTTTTTAGGGGCCACACTCAACAGCATGTAAAAGTTCCCAGGCTAGG
AGTCAAATTGGAGCCACAGTTGCCGGCCTACGCCACAGCCACAAAAATGCAGGATCCAAG
CATCTGTGATCTTCTACACCACAGTTTATGGCAACGCAGGATTTTTACCCCACTGAGGGA
GGCCAGGGATCGAACCTGCATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGCCCCTCACCGAGTTGAGAGAGGCGGACCGGGAGCGGAGCAGGGTCGGGATGGAG
CGTCAGGATGGACGAGGACGTGCTGACCACCCTGAAGATCCTCACCATCGGCGAGAGTGG
CGTGGGCAAACCCAGCCTGCTCTTGAGGTTCACAGATGATACTTTTGATCTAGAACTTGC
AGCAACAATAGTTGGCTAATAACAAAGAGGGGAAAACTAAATCACAGACTCCGTAATCCA
CTATACTAGAAGGCAGCTAGAACCCCAAGCCGCATTACAGGAGGAATGGCTGCCAGAAGC
GGCGGAAACTAAGCAGGCCTCCCATGGGAAGAAGTGGAGAGGATGCCACAGCTGCAGAGC
TTGGAGCCAGCAAGAGATGCTACGTGAAACTGAGAGGCCCCCCTGAGGTGCACAACCTGA
TCCCTTGTTTTTAAAAGCAAAGCACATTTCCTAAGCTAATGGCAGGAGTTTCCCTGCATC
TGGTTTGATCATAGGAAGTTGGGGAAGTGAAGATAAACAAGGAGTCACACAGACAAGAAT
TTTGCATTTGTCCGTCTTTATAGCGGTAGAGGAGACGCCTTTGCCTTGTGAAAAACCTCA
AGGCTGCCTATCTCCTTTGGCTGTTACGAAGTAAAAAACTAAATGATTCTCATGTAAAAC
CCTGAATCAAGACAAACTTTTGCTGGTGCAGAACTGAGCACTGTAGCCTTCTGCTTGAAC
CTCCTGCAAATACCGTGTTCAGGAATAGCTCAGCACTTTCAACAATGACTTAGCAAAGAG
AATCCAGCTTAAGGCCACTACCACCATTCAAGAATCAAAAAGGAAGAAATAGAAAAAGAA
CAAGTGAAGAATACTCATCAGAAAAAAATATTGCTGTAAAGAAGATGAAAACAGGACTGA
ACATTTTTTTTTTTTTTTTAGGGGCCACACTCAACAGCATGTAAAAGTTCCCAGGCTAGG
AGTCAAATTGGAGCCACAGTTGCCGGCCTACGCCACAGCCACAAAAATGCAGGATCCAAG
CATCTGTGATCTTCTACACCACAGTTTATGGCAACGCAGGATTTTTACCCCACTGAGGGA
GGCCAGGGATCGAACCTGCATCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13177614|gb|AAK14832.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13177614|gb|AAK14832.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-531, + strand, RNAz p=0.999991
               

               
               656-773, + strand, RNAz p=0.593726

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-531, + strand, RNAz p=0.999991
               

               
               656-773, + strand, RNAz p=0.593726

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               240-537, gnl|bosTau2|chr8 (17954481-17954770)
               

               
               240-537, gnl|Hg17|chr10 (27842537-27842903)
               


               
               582-907, gnl|bosTau2|chr8 (17954780-17955115)
               

               
               582-907, gnl|Hg17|chr10 (27842913-27843250)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-537, gnl|bosTau2|chr8 (17954481-17954770)
               

               
               240-537, gnl|Hg17|chr10 (27842537-27842903)
               


               
               582-907, gnl|bosTau2|chr8 (17954780-17955115)
               

               
               582-907, gnl|Hg17|chr10 (27842913-27843250)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cte (0.29274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	240-531, + strand, RNAz p=0.999991
	656-773, + strand, RNAz p=0.593726

	240-537, gnl\|bosTau2\|chr8 (17954481-17954770)
	240-537, gnl\|Hg17\|chr10 (27842537-27842903)

	582-907, gnl\|bosTau2\|chr8 (17954780-17955115)
	582-907, gnl\|Hg17\|chr10 (27842913-27843250)

	cte (0.29274)
	sto (0.179824)
	fbs (0.175346)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)