Ss1.1-Pig4-TMW8052F22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACACAGGGACAGCAACGGTCCCCGGATGCTTACGAGCGCTGGGTATGTGCGAGGGGATC GCGCGCCGTTCCCCTGCCTCCCCAGCCGATCTCTGGGATGGTTCGCGCCATCCGCGCGCG AGGCTTGAAGAGCGGGCGGTGGCGCGCTTCCACCAGGCAGTTTCTTGTCAGTGCCTCACC ATGGACTCCCTTCGCGCTGAGGCCGACGCCTTGGAAGCCGAGATCAAGGCCTTGAGGCGG GCGTGCGTGGAGCTACCGGCGCCGGGTGAAGACACCTCACCAGTCCGACAATCATTTCAA GATATATACCAATCAGATTCTGAAGGATGGGAGTCATTGAAAGATCTGAGAAGTCATCTT GGACATGTAGAATCAGAACTTCAATTTCTAAGTTCGCTTACTGGCATCAGCATAAGAAAT TATTCCAAGAAGATGGAGGACCTAACAAGCACTGAAATGACAGAAAAGAATATAAAGAAA GTTCTACAGAGACACAGATTATCAGGAAGTTGCCACATGATTACATTTCAACTTGAATTT CAGATTCTGGAAATCCAGAATAAGGAGAATTTATCTTCTGTTATTACTGACCTCAGCATA ATAATGGAGCCCACCGAATATTCAGAATTAAGTGAATTTGTATCTAGAACAGAAGAAAGA AGAGATCTGTTTATGTTTTTCCGAAGCCTACACTTCTTTGTGGAGTGGTGTGAATATCGC AAGCGCACATTTAAACATTTCAAGGAAAAGTACCCAGAGACTGTGCACCTTGCCAAGGGA GCCTCCTCCAGCTACATGGGGATCAGGAGCCACAGCCGACCAGAGTTTGAACTGGTAATT GTTTGGAGGATACAAATAGATGAAGAAGGGAAGGTTTTGCCGAGGCTGGATCTTCTCACC AAGGCGCCGCTGTCAGCCCTGGAACTGGACAAGAACAGAGTCATAGAAACTGCTCCTCTC AGCTTCCGAACCCTGCTGGGTGTGCTGGGCATTGAAGCCACTCTAGAAAGCCTGATAAAA TCACTTTGCACAGAGGAACAAGTTCCCACACAGTGAACAACTACACAGGAGTAAGATGCT GTACCTAGAGGTGTGTGATTTTATTGAGTATAAACATTTGCTCTTTTCCACTTGGAAACC TTACCTTTAGAACATGTTTATGCAGTTATGGCACATTATATATAAGTTGTCAGGACATGA AAAATAAATAGTTATTTAAATTTAAAATACCAAACAAGTGACATATCTAGTGTATTTTTA AAAGTAAACCTAGCATTTGCGGAAGCACAGAGGTGGTCATCCATCTTGGGAGGTGGGAAG ATGCCCATGCCTAGGGATGAACCCCATCTCGAAGATCAGCCCCCCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACACAGGGACAGCAACGGTCCCCGGATGCTTACGAGCGCTGGGTATGTGCGAGGGGATC GCGCGCCGTTCCCCTGCCTCCCCAGCCGATCTCTGGGATGGTTCGCGCCATCCGCGCGCG AGGCTTGAAGAGCGGGCGGTGGCGCGCTTCCACCAGGCAGTTTCTTGTCAGTGCCTCACC ATGGACTCCCTTCGCGCTGAGGCCGACGCCTTGGAAGCCGAGATCAAGGCCTTGAGGCGG GCGTGCGTGGAGCTACCGGCGCCGGGTGAAGACACCTCACCAGTCCGACAATCATTTCAA GATATATACCAATCAGATTCTGAAGGATGGGAGTCATTGAAAGATCTGAGAAGTCATCTT GGACATGTAGAATCAGAACTTCAATTTCTAAGTTCGCTTACTGGCATCAGCATAAGAAAT TATTCCAAGAAGATGGAGGACCTAACAAGCACTGAAATGACAGAAAAGAATATAAAGAAA GTTCTACAGAGACACAGATTATCAGGAAGTTGCCACATGATTACATTTCAACTTGAATTT CAGATTCTGGAAATCCAGAATAAGGAGAATTTATCTTCTGTTATTACTGACCTCAGCATA ATAATGGAGCCCACCGAATATTCAGAATTAAGTGAATTTGTATCTAGAACAGAAGAAAGA AGAGATCTGTTTATGTTTTTCCGAAGCCTACACTTCTTTGTGGAGTGGTGTGAATATCGC AAGCGCACATTTAAACATTTCAAGGAAAAGTACCCAGAGACTGTGCACCTTGCCAAGGGA GCCTCCTCCAGCTACATGGGGATCAGGAGCCACAGCCGACCAGAGTTTGAACTGGTAATT GTTTGGAGGATACAAATAGATGAAGAAGGGAAGGTTTTGCCGAGGCTGGATCTTCTCACC AAGGCGCCGCTGTCAGCCCTGGAACTGGACAAGAACAGAGTCATAGAAACTGCTCCTCTC AGCTTCCGAACCCTGCTGGGTGTGCTGGGCATTGAAGCCACTCTAGAAAGCCTGATAAAA TCACTTTGCACAGAGGAACAAGTTCCCACACAGTGAACAACTACACAGGAGTAAGATGCT GTACCTAGAGGTGTGTGATTTTATTGAGTATAAACATTTGCTCTTTTCCACTTGGAAACC TTACCTTTAGAACATGTTTATGCAGTTATGGCACATTATATATAAGTTGTCAGGACATGA AAAATAAATAGTTATTTAAATTTAAAATACCAAACAAGTGACATATCTAGTGTATTTTTA AAAGTAAACCTAGCATTTGCGGAAGCACAGAGGTGGTCATCCATCTTGGGAGGTGGGAAG ATGCCCATGCCTAGGGATGAACCCCATCTCGAAGATCAGCCCCCCTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 5-287, gnl|bosTau2|chr8 (46659983-46659701) | |
| 5-287, gnl|Hg17|chr9 (92167629-92167942) | |
| 5-287, gnl|Mm7|chr13 (49136773-49136460) | |
| 290-472, gnl|bosTau2|chr8 (46641418-46641236) | |
| 290-472, gnl|canFam2|chr1 (102073379-102073070) | |
| 290-472, gnl|dasNov1|scaffold_11414 (3618-3926) | |
| 290-472, gnl|echTel1|scaffold_323764 (49281-49563) | |
| 290-472, gnl|hg17|chr9 (92173909-92174217) | |
| 290-472, gnl|Hg17|chr9 (92174009-92174191) | |
| 290-472, gnl|loxAfr1|scaffold_58251 (155-468) | |
| 290-472, gnl|mm7|chr13 (49134263-49133971) | |
| 290-472, gnl|Mm7|chr13 (49134174-49133995) | |
| 290-472, gnl|oryCun1|scaffold_111266 (874-565) | |
| 290-472, gnl|panTro1|chrUn_random (27729649-27729951) | |
| 290-472, gnl|rheMac2|chr15 (104238042-104238350) | |
| 290-472, gnl|rn3|chr17 (20971557-20971830) | |
| 650-751, gnl|bosTau2|chr8 (46595986-46595885) | |
| 650-751, gnl|Hg17|chr9 (92221602-92221703) | |
| 650-751, gnl|Mm7|chr13 (49111226-49111125) | |
| 914-1341, gnl|bosTau2|chr7 (51902958-51903399) | |
| 914-1341, gnl|Hg17|chr9 (92454853-92455306) | |
| 914-1341, gnl|Mm7|chr13 (48948217-48947818) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-287, gnl|bosTau2|chr8 (46659983-46659701) | |
| 5-287, gnl|Hg17|chr9 (92167629-92167942) | |
| 5-287, gnl|Mm7|chr13 (49136773-49136460) | |
| 290-472, gnl|bosTau2|chr8 (46641418-46641236) | |
| 290-472, gnl|canFam2|chr1 (102073379-102073070) | |
| 290-472, gnl|dasNov1|scaffold_11414 (3618-3926) | |
| 290-472, gnl|echTel1|scaffold_323764 (49281-49563) | |
| 290-472, gnl|hg17|chr9 (92173909-92174217) | |
| 290-472, gnl|Hg17|chr9 (92174009-92174191) | |
| 290-472, gnl|loxAfr1|scaffold_58251 (155-468) | |
| 290-472, gnl|mm7|chr13 (49134263-49133971) | |
| 290-472, gnl|Mm7|chr13 (49134174-49133995) | |
| 290-472, gnl|oryCun1|scaffold_111266 (874-565) | |
| 290-472, gnl|panTro1|chrUn_random (27729649-27729951) | |
| 290-472, gnl|rheMac2|chr15 (104238042-104238350) | |
| 290-472, gnl|rn3|chr17 (20971557-20971830) | |
| 650-751, gnl|bosTau2|chr8 (46595986-46595885) | |
| 650-751, gnl|Hg17|chr9 (92221602-92221703) | |
| 650-751, gnl|Mm7|chr13 (49111226-49111125) | |
| 914-1341, gnl|bosTau2|chr7 (51902958-51903399) | |
| 914-1341, gnl|Hg17|chr9 (92454853-92455306) | |
| 914-1341, gnl|Mm7|chr13 (48948217-48947818) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cte (0.58548) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ill (0.175593) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ill (0.175593) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| ebs (0.118301) |