Non-Coding RNA Search

Ss1.1-Pig4-TMW8052G10.5

Sequence:


               
               AAGATGCCTTTGGAAACTTAATAGTAGGTCAATGTGTTTATGAAATATTCTGAATTCTAG
AAAATTGTTTTATATATTCAAGCATTCTTTGGTTTTCATGAGTGAAACACATAATTAGCT
CAGGCTTGTCAGGAACTCAGATGAGTTTTGGGGATCCACCTGAGATAATAAGTTCAGTAT
TTTTCCAAAAGTAATAATACACCATCCTTAAATGCAGTGAAATTGACTTGAAAAGTTAGA
GATTGGCATGAAGCAACTTTTTCCTCTTGGTTTCTATGAGGTTTGTTACTGGGCTAACCT
ACTTTGGATATTAGCTCATCCAAATCTACATTAATCAGTCCCATTCCTGTGTCTGCATGG
ATGTCTGATCTACACACACATGAATTTGAAAATGACAAAGGGACAAAGGTTACTATTAGA
ACATAAACTACAAAAAAGGTTCCAGCACGTGTGCTTGAATTCTCAGTGGTCTATGTTTGT
CCATATATACATGTATAGAACATGTCAGTGAAACCTCACTTTAGTGACATGCATGTTAAG
TGTATGAGAAACTTTACCAATGTTATCGTCCTTTGATTCTTAATATAAATACTATACATG
CCGGAAAACTAATGTGACTATTAATGTGACTACAAAAATGAGGTTTCACTGTACATTCCT
GCTGGGATGCAATTCCACCTTATGAGACATGTATATGGATTAATAAACCTTCATATTCCT
GCTTTAAGTTGCAGCCAAGTTACCATCTATTTACTATCATCATGACCCAAATTTTCAAAA
ACAGTTGTTGACTACTAAAAAGGATTCAGTGGACAGGGAGCACAGTCATGTGATTCTATC
TGGGAATAAACATCGAAGTTGTACAGCTGTATCCTCCTCAAAATCCGGTGAAGAATGCTA
TTTTTCTAGGCTGAGCTTTTGTTATAAACCTAATATTCAGAAGGCAAGAGTTACAATCCT
GATGTGTCTTTTTTTTCCGTTTGTTAATTCTGAATGTATTTTTAACAGAGTGATTTTTTT
GACTTACTAGTGTAATTTGCATTTTAAAAATAAATGGAAAAACAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGCCTTTGGAAACTTAATAGTAGGTCAATGTGTTTATGAAATATTCTGAATTCTAG
AAAATTGTTTTATATATTCAAGCATTCTTTGGTTTTCATGAGTGAAACACATAATTAGCT
CAGGCTTGTCAGGAACTCAGATGAGTTTTGGGGATCCACCTGAGATAATAAGTTCAGTAT
TTTTCCAAAAGTAATAATACACCATCCTTAAATGCAGTGAAATTGACTTGAAAAGTTAGA
GATTGGCATGAAGCAACTTTTTCCTCTTGGTTTCTATGAGGTTTGTTACTGGGCTAACCT
ACTTTGGATATTAGCTCATCCAAATCTACATTAATCAGTCCCATTCCTGTGTCTGCATGG
ATGTCTGATCTACACACACATGAATTTGAAAATGACAAAGGGACAAAGGTTACTATTAGA
ACATAAACTACAAAAAAGGTTCCAGCACGTGTGCTTGAATTCTCAGTGGTCTATGTTTGT
CCATATATACATGTATAGAACATGTCAGTGAAACCTCACTTTAGTGACATGCATGTTAAG
TGTATGAGAAACTTTACCAATGTTATCGTCCTTTGATTCTTAATATAAATACTATACATG
CCGGAAAACTAATGTGACTATTAATGTGACTACAAAAATGAGGTTTCACTGTACATTCCT
GCTGGGATGCAATTCCACCTTATGAGACATGTATATGGATTAATAAACCTTCATATTCCT
GCTTTAAGTTGCAGCCAAGTTACCATCTATTTACTATCATCATGACCCAAATTTTCAAAA
ACAGTTGTTGACTACTAAAAAGGATTCAGTGGACAGGGAGCACAGTCATGTGATTCTATC
TGGGAATAAACATCGAAGTTGTACAGCTGTATCCTCCTCAAAATCCGGTGAAGAATGCTA
TTTTTCTAGGCTGAGCTTTTGTTATAAACCTAATATTCAGAAGGCAAGAGTTACAATCCT
GATGTGTCTTTTTTTTCCGTTTGTTAATTCTGAATGTATTTTTAACAGAGTGATTTTTTT
GACTTACTAGTGTAATTTGCATTTTAAAAATAAATGGAAAAACAATCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-148, - strand, RNAz p=0.779196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-148, - strand, RNAz p=0.779196

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               11-101, + strand, RNAmicro p=0.939434

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               11-101, + strand, RNAmicro p=0.939434

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1065, gnl|bosTau2|chr9 (13449610-13450747)
               

               
               1-1065, gnl|Hg17|chr6 (125187347-125188480)
               

               
               1-1065, gnl|Mm7|chr10 (31471094-31469966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1065, gnl|bosTau2|chr9 (13449610-13450747)
               

               
               1-1065, gnl|Hg17|chr6 (125187347-125188480)
               

               
               1-1065, gnl|Mm7|chr10 (31471094-31469966)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.701385)
               

               
               fco (0.628832)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               ski (0.146735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.701385)
               

               
               fco (0.628832)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               ski (0.146735)

	1-1065, gnl\|bosTau2\|chr9 (13449610-13450747)
	1-1065, gnl\|Hg17\|chr6 (125187347-125188480)
	1-1065, gnl\|Mm7\|chr10 (31471094-31469966)

	fbs (0.701385)
	fco (0.628832)
	spc (0.226732)
	fcc (0.197785)
	ski (0.146735)