Non-Coding RNA Search

Ss1.1-Pig4-TMW8052G20.3

Sequence:


               
               GGCAGCCCCCGCCTGGGATGGTGTCTGGCCAGTGCCTGCAAACAGTGTCTTCAGAGACGG
TCAGTACAGTCTGTGGACTTGGAAGCAACAGCAAGAAAATATTGCAAGTTAAGTAGTTGT
ATATACAGTAGGTTTCCTTCAGTCTCTCTGGCTCATCCTTGTAATTTACGTGTATCTCTG
TAGTGTTGCCAGCTTTTGGAGAAGATTCATATTGATGATGTGTCAGACATCAAAGAATAT
GCTTTCTGTCACCTGCCGAAGTCGTAACTGTGGGTATTTATGGCCGTGTGTATCTATATG
TATCAATGTGTAGATTGTACATCAGTATACAGTGTACGTACATCAAATTTATTTTTGTCC
AGTGTGATATGAAAAGCAAGTAAAAACCTCATAGGATGGAGAATATAATGCAGTTGTGGA
GAGTCTATATAGTGGTACTGTTTTATTAAACTTAAATTCAAATGATATTTTGATTAATTT
TTTTAATAAGATTTTATGCTAGAAAATCTCATCTTTGAGCTTTGAATCACCAGAGCAGAA
AGGACTCTGAACTAACTTTGTTAAACTATTTCAGTGTACTGTGTACAATACTGGGGGGGG
GGAGGGAGGGTAGCTCATTATAATATGGAATATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCCCCCGCCTGGGATGGTGTCTGGCCAGTGCCTGCAAACAGTGTCTTCAGAGACGG
TCAGTACAGTCTGTGGACTTGGAAGCAACAGCAAGAAAATATTGCAAGTTAAGTAGTTGT
ATATACAGTAGGTTTCCTTCAGTCTCTCTGGCTCATCCTTGTAATTTACGTGTATCTCTG
TAGTGTTGCCAGCTTTTGGAGAAGATTCATATTGATGATGTGTCAGACATCAAAGAATAT
GCTTTCTGTCACCTGCCGAAGTCGTAACTGTGGGTATTTATGGCCGTGTGTATCTATATG
TATCAATGTGTAGATTGTACATCAGTATACAGTGTACGTACATCAAATTTATTTTTGTCC
AGTGTGATATGAAAAGCAAGTAAAAACCTCATAGGATGGAGAATATAATGCAGTTGTGGA
GAGTCTATATAGTGGTACTGTTTTATTAAACTTAAATTCAAATGATATTTTGATTAATTT
TTTTAATAAGATTTTATGCTAGAAAATCTCATCTTTGAGCTTTGAATCACCAGAGCAGAA
AGGACTCTGAACTAACTTTGTTAAACTATTTCAGTGTACTGTGTACAATACTGGGGGGGG
GGAGGGAGGGTAGCTCATTATAATATGGAATATACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-278, - strand, RNAz p=0.883879

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-278, - strand, RNAz p=0.883879

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               104-636, gnl|bosTau2|chr27 (26098381-26098913)
               

               
               104-636, gnl|canFam2|chr16 (24286477-24287226)
               

               
               104-636, gnl|dasNov1|scaffold_3158 (15475-16236)
               

               
               104-636, gnl|echTel1|scaffold_300841 (14445-15198)
               

               
               104-636, gnl|hg17|chr8 (18432133-18432882)
               

               
               104-636, gnl|Hg17|chr8 (18433020-18432501)
               

               
               104-636, gnl|loxAfr1|scaffold_23734 (7591-8390)
               

               
               104-636, gnl|mm7|chr8 (66146429-66147188)
               

               
               104-636, gnl|Mm7|chr8 (66147330-66146795)
               

               
               104-636, gnl|monDom2|scaffold_1 (77160488-77161329)
               

               
               104-636, gnl|oryCun1|scaffold_202365 (41030-41778)
               

               
               104-636, gnl|panTro1|chr7 (19235528-19236282)
               

               
               104-636, gnl|rheMac2|chr8 (18421441-18422193)
               

               
               104-636, gnl|rn3|chr16 (23666981-23666233)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-636, gnl|bosTau2|chr27 (26098381-26098913)
               

               
               104-636, gnl|canFam2|chr16 (24286477-24287226)
               

               
               104-636, gnl|dasNov1|scaffold_3158 (15475-16236)
               

               
               104-636, gnl|echTel1|scaffold_300841 (14445-15198)
               

               
               104-636, gnl|hg17|chr8 (18432133-18432882)
               

               
               104-636, gnl|Hg17|chr8 (18433020-18432501)
               

               
               104-636, gnl|loxAfr1|scaffold_23734 (7591-8390)
               

               
               104-636, gnl|mm7|chr8 (66146429-66147188)
               

               
               104-636, gnl|Mm7|chr8 (66147330-66146795)
               

               
               104-636, gnl|monDom2|scaffold_1 (77160488-77161329)
               

               
               104-636, gnl|oryCun1|scaffold_202365 (41030-41778)
               

               
               104-636, gnl|panTro1|chr7 (19235528-19236282)
               

               
               104-636, gnl|rheMac2|chr8 (18421441-18422193)
               

               
               104-636, gnl|rn3|chr16 (23666981-23666233)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	104-636, gnl\|bosTau2\|chr27 (26098381-26098913)
	104-636, gnl\|canFam2\|chr16 (24286477-24287226)
	104-636, gnl\|dasNov1\|scaffold_3158 (15475-16236)
	104-636, gnl\|echTel1\|scaffold_300841 (14445-15198)
	104-636, gnl\|hg17\|chr8 (18432133-18432882)
	104-636, gnl\|Hg17\|chr8 (18433020-18432501)
	104-636, gnl\|loxAfr1\|scaffold_23734 (7591-8390)
	104-636, gnl\|mm7\|chr8 (66146429-66147188)
	104-636, gnl\|Mm7\|chr8 (66147330-66146795)
	104-636, gnl\|monDom2\|scaffold_1 (77160488-77161329)
	104-636, gnl\|oryCun1\|scaffold_202365 (41030-41778)
	104-636, gnl\|panTro1\|chr7 (19235528-19236282)
	104-636, gnl\|rheMac2\|chr8 (18421441-18422193)
	104-636, gnl\|rn3\|chr16 (23666981-23666233)