Non-Coding RNA Search

Ss1.1-Pig4-TMW8052G22.3

Sequence:


               
               CGCCAGCCGCGCGCTGCTGCAGAAGCCGGGGTTATTTTGGAGGTGACCGCCAGCCGCGCG
CTGCTGCAGAAGCCGGGGTTATTCCGGGGCCCGAGACGCTGCAGCGTGGGAACCGAACCC
TCCAGGTGACCCAAGCCACAGAATGTCAATAGCACGTTCATCTGTCCATGCCAAATGGGT
CGTGGGGAAGGTGATTGGGACAGCAATGCAAAAAACTGCTAAAGTGAGAGTGACCAGACT
GGTTCTGGATCCCTATTTGTTAAAGTATTTTAATAAGCGAAAAACCTACTTTGCCCACGA
TGCTCTTCAGCAGTGCACCGTCGGGGATATCGTGCTTCTCAAAGCTTTACCTGTCCCTCG
AACCAAGCACGTGAAGCATGAACTGGCCGAGATCATTTTCAAAGTTGGACAAGTCATAGA
TCCGGTGACTGGCAAGCCCTGTGCAGGAACCACCTACCTGGAGAGCCCCATCAGTCCCGA
AAGCACCCGCCTGACCAAAAACCTGGAAGCACTCCAGCTCTCGTCAACACAGTGAAGGGG
GAGTGAAGACGGAGCCAAAGGGAAGGATTTATAAGTTTGCTTTATGGAAAAATTTTTCTA
AGTTTCCTCACAAACCGTCCAGTTTAATCTTCTGGTATTTATGAAATAGTGAAAGTAAAT
GAAATAAAAACTTTGTTATAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCAGCCGCGCGCTGCTGCAGAAGCCGGGGTTATTTTGGAGGTGACCGCCAGCCGCGCG
CTGCTGCAGAAGCCGGGGTTATTCCGGGGCCCGAGACGCTGCAGCGTGGGAACCGAACCC
TCCAGGTGACCCAAGCCACAGAATGTCAATAGCACGTTCATCTGTCCATGCCAAATGGGT
CGTGGGGAAGGTGATTGGGACAGCAATGCAAAAAACTGCTAAAGTGAGAGTGACCAGACT
GGTTCTGGATCCCTATTTGTTAAAGTATTTTAATAAGCGAAAAACCTACTTTGCCCACGA
TGCTCTTCAGCAGTGCACCGTCGGGGATATCGTGCTTCTCAAAGCTTTACCTGTCCCTCG
AACCAAGCACGTGAAGCATGAACTGGCCGAGATCATTTTCAAAGTTGGACAAGTCATAGA
TCCGGTGACTGGCAAGCCCTGTGCAGGAACCACCTACCTGGAGAGCCCCATCAGTCCCGA
AAGCACCCGCCTGACCAAAAACCTGGAAGCACTCCAGCTCTCGTCAACACAGTGAAGGGG
GAGTGAAGACGGAGCCAAAGGGAAGGATTTATAAGTTTGCTTTATGGAAAAATTTTTCTA
AGTTTCCTCACAAACCGTCCAGTTTAATCTTCTGGTATTTATGAAATAGTGAAAGTAAAT
GAAATAAAAACTTTGTTATAATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96Q59_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96Q59_HUMAN

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               264-684, gnl|bosTau2|chr25 (23441081-23441500)
               

               
               264-684, gnl|Hg17|chr7 (55796809-55797235)
               

               
               264-684, gnl|Mm7|chr5 (128955745-128956099)
               


               
               276-681, gnl|bosTau2|chr10 (15832338-15832757)
               

               
               276-681, gnl|Hg17|chr14 (20829219-20830206)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-684, gnl|bosTau2|chr25 (23441081-23441500)
               

               
               264-684, gnl|Hg17|chr7 (55796809-55797235)
               

               
               264-684, gnl|Mm7|chr5 (128955745-128956099)
               


               
               276-681, gnl|bosTau2|chr10 (15832338-15832757)
               

               
               276-681, gnl|Hg17|chr14 (20829219-20830206)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               cte (0.29274)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	264-684, gnl\|bosTau2\|chr25 (23441081-23441500)
	264-684, gnl\|Hg17\|chr7 (55796809-55797235)
	264-684, gnl\|Mm7\|chr5 (128955745-128956099)

	276-681, gnl\|bosTau2\|chr10 (15832338-15832757)
	276-681, gnl\|Hg17\|chr14 (20829219-20830206)

	cte (0.29274)
	pla (0.267344)
	ecc (0.23007)
	nms (0.213858)
	col (0.195008)
	nep (0.183925)
	rec (0.17307)
	nje (0.16592)
	nco (0.161734)
	mga (0.160205)
	cli (0.152812)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	hlv (0.139256)
	ste (0.135208)
	ese (0.126502)
	cly (0.120642)
	pgl (0.118483)
	spc (0.113366)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)