Non-Coding RNA Search

Ss1.1-Pig4-TMW8052H06.5

Sequence:


               
               TGGCCTACGCCAGAGCCACAGCAACGCGGCATCCGAGCCGTGTCTGCAACCTACACCACA
GCTCACGGCAACGCCGGATCGTTAACCCACTGAGCAAGGGCAGGGACCGAACCCGCAACC
TCATGGTTCCTAGTCGGATTCGTTAACCACTGCGCCACAATGGGAACTCCCTCCTCTGAT
TTCAAAAAGCAGGGTCGCATAATCCCTTTCTCCTGTGCTAACGTGTCTACATATGTACAT
ACGCGGTCCGTGTGCGTGTACATGCTCTACCAGATGTCCTCATATCTGGCTTCCCTTTTT
AACCTCCTGCCACCTGCCAACCAGCCACGCTACAGGTTTCTTGCCTAACCTGTTCCACCA
GCCAGGTCATTTCTGATGGGACCTTGCCCCTTCTGGACAGAGACTGAGGGACATTAGCAG
GCCAAAATGGGCTGAATCCTTCAGACTTCTGCTTCCTGGCTCTCAAAGCTGACTCAGGAA
CTGGGCCGGCGGCGGAGGAAGACATGTCGGGATAAGGGAGGCAGGGGGCTCATCCGATCC
CCCATATCCTGGAATGGGTCAGCACCTCTCCTCTCCTCTGCTAGAACAAAGGAGTGTCCC
TATCCTATACTGCTCTTGCCATCTTCCCATCTTCCCCATGCTGCCCTATGGGCATCTTTG
GGCACAATCCTAGGAATTCTTGGTCTGCTCTGACATCATAACCTCAAATCTAAACCTAAA
ATCCCAACCCCCTCCCTCAACCAAAAAGCCATGAAAGCAGAACAAGAATTCCCCTTTAAG
AGCCCCCCCACTGCACCCTCTTACAAAGGGACACAGCTGTGGAAATGGTGCTTAAACTCC
ACAGGTATCTGAATGAGTGTAAGTAGGACACCCTCAAGGGCCACTAGGCCCTGAGTGAAC
AGTCTTAAGACAGGGAATTTTGTGTTCCATTGACCTTGTTAGACATTCAGCAGAATCCTG
ACTTTAGCTCCTTCTCTTTCCTGAGGCTTGGCCCTGCTAACATTCCCACCTCTAAGAGGA
TGAAGGGCCCAGGCAGCAGTGGTTGGTCCACACAGGAGGTGGGCTGGGGGATGGAGTCTG
TGCTGGTGAACTCACAGAGTGCGGAGATGGGCCTTGACTCCAACTCCCATGACCTCTGGC
TGAATTGGGGTGAAGGCCCCACAGGGATCCTCTAAGAGTACTTTTCTGCTCCCCCAGCCG
ACCACAAGTAATAAAAGCAATGGTGCCACTGTTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTACGCCAGAGCCACAGCAACGCGGCATCCGAGCCGTGTCTGCAACCTACACCACA
GCTCACGGCAACGCCGGATCGTTAACCCACTGAGCAAGGGCAGGGACCGAACCCGCAACC
TCATGGTTCCTAGTCGGATTCGTTAACCACTGCGCCACAATGGGAACTCCCTCCTCTGAT
TTCAAAAAGCAGGGTCGCATAATCCCTTTCTCCTGTGCTAACGTGTCTACATATGTACAT
ACGCGGTCCGTGTGCGTGTACATGCTCTACCAGATGTCCTCATATCTGGCTTCCCTTTTT
AACCTCCTGCCACCTGCCAACCAGCCACGCTACAGGTTTCTTGCCTAACCTGTTCCACCA
GCCAGGTCATTTCTGATGGGACCTTGCCCCTTCTGGACAGAGACTGAGGGACATTAGCAG
GCCAAAATGGGCTGAATCCTTCAGACTTCTGCTTCCTGGCTCTCAAAGCTGACTCAGGAA
CTGGGCCGGCGGCGGAGGAAGACATGTCGGGATAAGGGAGGCAGGGGGCTCATCCGATCC
CCCATATCCTGGAATGGGTCAGCACCTCTCCTCTCCTCTGCTAGAACAAAGGAGTGTCCC
TATCCTATACTGCTCTTGCCATCTTCCCATCTTCCCCATGCTGCCCTATGGGCATCTTTG
GGCACAATCCTAGGAATTCTTGGTCTGCTCTGACATCATAACCTCAAATCTAAACCTAAA
ATCCCAACCCCCTCCCTCAACCAAAAAGCCATGAAAGCAGAACAAGAATTCCCCTTTAAG
AGCCCCCCCACTGCACCCTCTTACAAAGGGACACAGCTGTGGAAATGGTGCTTAAACTCC
ACAGGTATCTGAATGAGTGTAAGTAGGACACCCTCAAGGGCCACTAGGCCCTGAGTGAAC
AGTCTTAAGACAGGGAATTTTGTGTTCCATTGACCTTGTTAGACATTCAGCAGAATCCTG
ACTTTAGCTCCTTCTCTTTCCTGAGGCTTGGCCCTGCTAACATTCCCACCTCTAAGAGGA
TGAAGGGCCCAGGCAGCAGTGGTTGGTCCACACAGGAGGTGGGCTGGGGGATGGAGTCTG
TGCTGGTGAACTCACAGAGTGCGGAGATGGGCCTTGACTCCAACTCCCATGACCTCTGGC
TGAATTGGGGTGAAGGCCCCACAGGGATCCTCTAAGAGTACTTTTCTGCTCCCCCAGCCG
ACCACAAGTAATAAAAGCAATGGTGCCACTGTTACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               487-621, - strand, RNAz p=0.994312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               487-621, - strand, RNAz p=0.994312

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-1236, gnl|bosTau2|chr26 (13437714-13438811)
               

               
               168-1236, gnl|Hg17|chr10 (102789505-102790966)
               

               
               168-1236, gnl|Mm7|chr19 (44948746-44950231)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-1236, gnl|bosTau2|chr26 (13437714-13438811)
               

               
               168-1236, gnl|Hg17|chr10 (102789505-102790966)
               

               
               168-1236, gnl|Mm7|chr19 (44948746-44950231)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cga (0.558191)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               jca (0.11396)

	168-1236, gnl\|bosTau2\|chr26 (13437714-13438811)
	168-1236, gnl\|Hg17\|chr10 (102789505-102790966)
	168-1236, gnl\|Mm7\|chr19 (44948746-44950231)