Non-Coding RNA Search

Ss1.1-Pig4-TMW8052H07.3

Sequence:


               
               GCAAATGGTTTCATTTTGTCTAAGGCATAGGGAAATGGTTGGAGGTGAAGGTTAGAAAGA
CGGTTTGATGCCAAAGCTCCAAGGGCTTGAGAAATAGGGAGCTGAGAAATTACAAGGTCA
GGCATCATTATGCAGGTTTCTGTGGGTTATGAAGTCATTGGGACTCAAGGTGCTAATCTG
ATTGTGTTGTATGATCTGGGTTAAAATAGGAGGTGGAAGAGAGTACAGCAAGAGAGGCCC
TGATTTAGGGAGGTGAGGTCTTTCTGATGTTCAGTTTCCCCAGCTATATAGAGCTTAGAT
GGGTAGTTTTCCCCTTCCTTTCCCCCATCCCCAGAACTGTTTTCATATGCAATGGCTGCC
TTGTTTGAAGTGGGGTGTAGGGCCTAGGGTGCCTTTCTCTGATCGCTCCATACTCGAGGG
CAGCCTCTAAGGAACTTTAAGGAATTTTAGGGCCTTTTGAAGTACAGATTAAAGTCACTC
ACTTGAGTAGTCACAGATTCCTATCAGGTTTTGAGAAACACTCTACTGCTTCTCAGTGTG
CACTCGTCATTTTGCTTTTCCCCTCTTGTCAAAACAGTAAGTAGTACATGTAGACGATGC
TATGTCCATACCAACCTGCCTTCAGAGACTTGGAACTGGGAGTTCTCCTGTGGCTCTGTG
GGTTAAGGATCGGCATTGTCACTGCAGCAGCTCGAGTCGCTCCATCTAGCCAAACTGGGA
ACTTCCACGTGCAGGGAGCACTGCCAAAAAAAAGAAAGAAAAGAAAGACTCAGAACCTTA
GGCTGAGGAGAAAGAATTCCAGCCACACATTTCCTCTCTTGGTCTGAGTCACTAGGGAAT
TCCCCAGTAAGGCGGCATTCCTGAGAGTTGGGCTAGACCACGGGGACATGATCAGAGAGA
GGGATAGAGTCTGAGCAAGACAGGCCAAGGGTTCAGTTGCTGGACTTACACGTGTCTCGA
CTATCGCCCACAGGTGATGGAGGACGAGGAGAAAGCAGTGGAGATCTTGGTGACCAACAC
GGAAGCTGCTCATTCTCCATTCCCCATTCGCTGCTGTTGGTTCCGTCTCCGCTGCTTGGC
AGCTACTAGCGTTATATGTGGCTGCTCTTGCCTGGGAGTTGTGGCCCTTGTGTTTGCCAT
CAAGGCAGAAGAGCGGCATAAGACAGGCCGGTTGGAGGAGGCAGTGCACTGGGGGGCCCG
GGCCCGGAGGTACATCCTGGCCAGCTTTGCTGTCTGGCTTGCAGTCCTCGTTCTGGGCCC
CCTGCTTCTATGGCTGCTCTCCTACGTCATCGCCCAGGCTGAGTGACCCTGGGTGGCCTC
TGCTGAGAGTCAGCTGAGACCTCCTGGTTCCTGCAGTGCTAGGGTCTGGTGCCAGCAGTG
GTACTTCCTGACTGGAAGGATGGTGCTTCTCTCAAAGGTCTTTGGAAGAGCTCTTAAGTC
CTTTACAAATGGCAGCAGCTGAGACCGATGAGGGGAGGTCAACCTGCTCTGTTCTTTCAG
TGCCCACCGTCCCCTATTCCCCCCAACCTACTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAATGGTTTCATTTTGTCTAAGGCATAGGGAAATGGTTGGAGGTGAAGGTTAGAAAGA
CGGTTTGATGCCAAAGCTCCAAGGGCTTGAGAAATAGGGAGCTGAGAAATTACAAGGTCA
GGCATCATTATGCAGGTTTCTGTGGGTTATGAAGTCATTGGGACTCAAGGTGCTAATCTG
ATTGTGTTGTATGATCTGGGTTAAAATAGGAGGTGGAAGAGAGTACAGCAAGAGAGGCCC
TGATTTAGGGAGGTGAGGTCTTTCTGATGTTCAGTTTCCCCAGCTATATAGAGCTTAGAT
GGGTAGTTTTCCCCTTCCTTTCCCCCATCCCCAGAACTGTTTTCATATGCAATGGCTGCC
TTGTTTGAAGTGGGGTGTAGGGCCTAGGGTGCCTTTCTCTGATCGCTCCATACTCGAGGG
CAGCCTCTAAGGAACTTTAAGGAATTTTAGGGCCTTTTGAAGTACAGATTAAAGTCACTC
ACTTGAGTAGTCACAGATTCCTATCAGGTTTTGAGAAACACTCTACTGCTTCTCAGTGTG
CACTCGTCATTTTGCTTTTCCCCTCTTGTCAAAACAGTAAGTAGTACATGTAGACGATGC
TATGTCCATACCAACCTGCCTTCAGAGACTTGGAACTGGGAGTTCTCCTGTGGCTCTGTG
GGTTAAGGATCGGCATTGTCACTGCAGCAGCTCGAGTCGCTCCATCTAGCCAAACTGGGA
ACTTCCACGTGCAGGGAGCACTGCCAAAAAAAAGAAAGAAAAGAAAGACTCAGAACCTTA
GGCTGAGGAGAAAGAATTCCAGCCACACATTTCCTCTCTTGGTCTGAGTCACTAGGGAAT
TCCCCAGTAAGGCGGCATTCCTGAGAGTTGGGCTAGACCACGGGGACATGATCAGAGAGA
GGGATAGAGTCTGAGCAAGACAGGCCAAGGGTTCAGTTGCTGGACTTACACGTGTCTCGA
CTATCGCCCACAGGTGATGGAGGACGAGGAGAAAGCAGTGGAGATCTTGGTGACCAACAC
GGAAGCTGCTCATTCTCCATTCCCCATTCGCTGCTGTTGGTTCCGTCTCCGCTGCTTGGC
AGCTACTAGCGTTATATGTGGCTGCTCTTGCCTGGGAGTTGTGGCCCTTGTGTTTGCCAT
CAAGGCAGAAGAGCGGCATAAGACAGGCCGGTTGGAGGAGGCAGTGCACTGGGGGGCCCG
GGCCCGGAGGTACATCCTGGCCAGCTTTGCTGTCTGGCTTGCAGTCCTCGTTCTGGGCCC
CCTGCTTCTATGGCTGCTCTCCTACGTCATCGCCCAGGCTGAGTGACCCTGGGTGGCCTC
TGCTGAGAGTCAGCTGAGACCTCCTGGTTCCTGCAGTGCTAGGGTCTGGTGCCAGCAGTG
GTACTTCCTGACTGGAAGGATGGTGCTTCTCTCAAAGGTCTTTGGAAGAGCTCTTAAGTC
CTTTACAAATGGCAGCAGCTGAGACCGATGAGGGGAGGTCAACCTGCTCTGTTCTTTCAG
TGCCCACCGTCCCCTATTCCCCCCAACCTACTCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860296|ref|XP_618685.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860296|ref|XP_618685.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1172-1394, + strand, RNAz p=0.960063

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1172-1394, + strand, RNAz p=0.960063

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-636, gnl|bosTau2|chr25 (25695601-25694966)
               

               
               1-636, gnl|Hg17|chr16 (30659732-30660361)
               

               
               1-636, gnl|Mm7|chr7 (123658512-123659483)
               


               
               1135-1495, gnl|bosTau2|chr25 (25693339-25692970)
               

               
               1135-1495, gnl|Hg17|chr16 (30662593-30662972)
               

               
               1135-1495, gnl|Mm7|chr7 (123661330-123661704)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr25 (25695601-25694966)
               

               
               1-636, gnl|Hg17|chr16 (30659732-30660361)
               

               
               1-636, gnl|Mm7|chr7 (123658512-123659483)
               


               
               1135-1495, gnl|bosTau2|chr25 (25693339-25692970)
               

               
               1135-1495, gnl|Hg17|chr16 (30662593-30662972)
               

               
               1135-1495, gnl|Mm7|chr7 (123661330-123661704)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-636, gnl\|bosTau2\|chr25 (25695601-25694966)
	1-636, gnl\|Hg17\|chr16 (30659732-30660361)
	1-636, gnl\|Mm7\|chr7 (123658512-123659483)

	1135-1495, gnl\|bosTau2\|chr25 (25693339-25692970)
	1135-1495, gnl\|Hg17\|chr16 (30662593-30662972)
	1135-1495, gnl\|Mm7\|chr7 (123661330-123661704)