Ss1.1-Pig4-TMW8052H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGTAGCCACCTTGGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGAAGTAACCCTCC TCTGTCCTTACCGGTGTCTGCCCGTCGGCGGCCGGAGGAGGAGTAGGTGCGGGTGAAGAT GGCGGCAGCCGAGGCCGCGAACTGCATCATGGAGGTGTCCTGTGGCCAGGCAGAAAGCAG CGAGAAGCCCAACGCCGAGGACATGACGTCCAAAGATTACTACTTTGATTCCTACGCTCA CTTCGGCATCCACGAGGAAATGCTGAAAGATGAGGTGCGCACCCTCACCTACCGAAACTC CATGTTTCACAACCGGCACCTTTTCAAGGACAAGGTGGTGCTGGACGTGGGCTCGGGCAC AGGGATCCTCTGCATGTTCGCTGCCAAGGCCGGTGCCCGCAAGGTCATCGGGATCGAGTG TTCCAGTATCTCTGATTATGCGGTGAAGATCGTCAAAGCCAACAAGTTAGACCACGTGGT GACCATCATCAAGGGAAAGGTGGAGGAGGTGGAGCTGCCGGTGGACAAGGTGGACATCGT CATCAGCGAGTGGATGGGCTACTGCCTCTTCTACGAGTCCATGCTCAACACCGTGCTCTA CGCCCGCGACAAGTGGCTGGCGCCCGACGGCCTCATCTTCCCAGACCGAGCCACGCTGTA CGTGACGGCCATCGAAGACCGGCAGTACAAAGACTACAAGATCCACTGGTGGGAGAACGT GTACGGCTTTGACATGTCCTGCATCAAAGACGTGGCCATCAAGGAGCCCCTGGTGGATGT GGTGGACCCCAAGCAGCTGGTTACCAACGCCTGCCTCATAAAGGAGGTTGACATCTACAC AGTCAAAGTGGAGGACCTGACCTTCACGTCCCCCTTCTGCCTGCAAGTGAAGCGGAACGA CTACGTGCACGCGCTGGTGGCCTACTTCAACATCGAGTTCACCCGCTGCCACAAGAGGAC CGGCTTCTCCACCAGCCCCGAGTCCCCGTACACGCACTGGAAGCAGACGGTGTTTTACAT GGAGGACTACCTGACGGTGAAGACGGGCGAGGAGATCTTTGGCACGATCGGCATGCGGCC CAACGCCAAGAACAACCGTGACCTGGACTTCACCATTGACCTGGACTTCAAAGGCCAGCT GTGCGAGCTGTCCTGCTCCACCGACTACCGGATGCGCTAGGTGGCGCCGGCTTTTCCCAC CCTGGCCGGGCCGGCCCTGCGAGGGCCCAGGGGCTGCGGCATTCTTAGGCGGTTTCGGGG CTCCCCCTTCCTCTCCCACCCTCCCTCCCACAGAAGGGGGTTTTAGGGGCCAGGGGCGGG GGGCACATCGTGACTGTGTTTTTCATAACTTATGTTTTTATATGGTTGCATTTACGCCAA TAAATCCTCAGCTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGTAGCCACCTTGGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGAAGTAACCCTCC TCTGTCCTTACCGGTGTCTGCCCGTCGGCGGCCGGAGGAGGAGTAGGTGCGGGTGAAGAT GGCGGCAGCCGAGGCCGCGAACTGCATCATGGAGGTGTCCTGTGGCCAGGCAGAAAGCAG CGAGAAGCCCAACGCCGAGGACATGACGTCCAAAGATTACTACTTTGATTCCTACGCTCA CTTCGGCATCCACGAGGAAATGCTGAAAGATGAGGTGCGCACCCTCACCTACCGAAACTC CATGTTTCACAACCGGCACCTTTTCAAGGACAAGGTGGTGCTGGACGTGGGCTCGGGCAC AGGGATCCTCTGCATGTTCGCTGCCAAGGCCGGTGCCCGCAAGGTCATCGGGATCGAGTG TTCCAGTATCTCTGATTATGCGGTGAAGATCGTCAAAGCCAACAAGTTAGACCACGTGGT GACCATCATCAAGGGAAAGGTGGAGGAGGTGGAGCTGCCGGTGGACAAGGTGGACATCGT CATCAGCGAGTGGATGGGCTACTGCCTCTTCTACGAGTCCATGCTCAACACCGTGCTCTA CGCCCGCGACAAGTGGCTGGCGCCCGACGGCCTCATCTTCCCAGACCGAGCCACGCTGTA CGTGACGGCCATCGAAGACCGGCAGTACAAAGACTACAAGATCCACTGGTGGGAGAACGT GTACGGCTTTGACATGTCCTGCATCAAAGACGTGGCCATCAAGGAGCCCCTGGTGGATGT GGTGGACCCCAAGCAGCTGGTTACCAACGCCTGCCTCATAAAGGAGGTTGACATCTACAC AGTCAAAGTGGAGGACCTGACCTTCACGTCCCCCTTCTGCCTGCAAGTGAAGCGGAACGA CTACGTGCACGCGCTGGTGGCCTACTTCAACATCGAGTTCACCCGCTGCCACAAGAGGAC CGGCTTCTCCACCAGCCCCGAGTCCCCGTACACGCACTGGAAGCAGACGGTGTTTTACAT GGAGGACTACCTGACGGTGAAGACGGGCGAGGAGATCTTTGGCACGATCGGCATGCGGCC CAACGCCAAGAACAACCGTGACCTGGACTTCACCATTGACCTGGACTTCAAAGGCCAGCT GTGCGAGCTGTCCTGCTCCACCGACTACCGGATGCGCTAGGTGGCGCCGGCTTTTCCCAC CCTGGCCGGGCCGGCCCTGCGAGGGCCCAGGGGCTGCGGCATTCTTAGGCGGTTTCGGGG CTCCCCCTTCCTCTCCCACCCTCCCTCCCACAGAAGGGGGTTTTAGGGGCCAGGGGCGGG GGGCACATCGTGACTGTGTTTTTCATAACTTATGTTTTTATATGGTTGCATTTACGCCAA TAAATCCTCAGCTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 472-589, + strand, RNAz p=0.784271 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 472-589, + strand, RNAz p=0.784271 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 249-680, gnl|bosTau2|chr3 (33085972-33086400) | |
| 249-680, gnl|Hg17|chr1 (107311546-107311974) | |
| 249-680, gnl|Mm7|chr3 (110069084-110068656) | |
| 255-421, gnl|bosTau2|chr18 (48768093-48768258) | |
| 255-421, gnl|canFam2|chr1 (109744259-109744095) | |
| 255-421, gnl|danRer3|chr3 (27666408-27666570) | |
| 255-421, gnl|dasNov1|scaffold_40398 (13778-13614) | |
| 255-421, gnl|echTel1|scaffold_202916 (4193-4029) | |
| 255-421, gnl|fr1|chrUn (8173291-8173131) | |
| 255-421, gnl|galGal2|chrUn (122481750-122481914) | |
| 255-421, gnl|hg17|chr19 (54876976-54877140) | |
| 255-421, gnl|Hg17|chr19 (54876977-54877142) | |
| 255-421, gnl|loxAfr1|scaffold_64840 (6500-6336) | |
| 255-421, gnl|mm7|chr7 (41157626-41157462) | |
| 255-421, gnl|Mm7|chr7 (41157623-41157458) | |
| 255-421, gnl|monDom2|scaffold_105 (4061210-4061046) | |
| 255-421, gnl|oryCun1|scaffold_192005 (1539-1375) | |
| 255-421, gnl|panTro1|chr20 (52239321-52239485) | |
| 255-421, gnl|rheMac2|chr19 (55956668-55956832) | |
| 255-421, gnl|rn3|chr1 (95532434-95532270) | |
| 255-421, gnl|tetNig1|chr19 (2349880-2350040) | |
| 255-421, gnl|xenTro1|scaffold_682 (352518-352682) | |
| 472-620, gnl|bosTau2|chr18 (48770199-48770348) | |
| 472-620, gnl|canFam2|chr1 (109742116-109741926) | |
| 472-620, gnl|canFam2|chr1 (109741945-109742088) | |
| 472-620, gnl|danRer3|chr3 (27667120-27667282) | |
| 472-620, gnl|danRer3|chr3 (27667378-27667137) | |
| 472-620, gnl|dasNov1|scaffold_40398 (13412-13552) | |
| 472-620, gnl|dasNov1|scaffold_9036 (51541-51699) | |
| 472-620, gnl|echTel1|scaffold_202916 (2746-2555) | |
| 472-620, gnl|echTel1|scaffold_312429 (294357-294499) | |
| 472-620, gnl|fr1|chrUn (8172901-8172709) | |
| 472-620, gnl|fr1|chrUn (268342286-268342428) | |
| 472-620, gnl|galGal2|chrUn (122492512-122492678) | |
| 472-620, gnl|hg17|chr19 (54878972-54879160) | |
| 472-620, gnl|Hg17|chr19 (54878991-54879139) | |
| 472-620, gnl|hg17|chr5 (176625742-176625885) | |
| 472-620, gnl|loxAfr1|scaffold_64840 (4028-3834) | |
| 472-620, gnl|loxAfr1|scaffold_64840 (3856-3997) | |
| 472-620, gnl|mm7|chr18 (4650876-4650734) | |
| 472-620, gnl|mm7|chr7 (41155276-41155106) | |
| 472-620, gnl|Mm7|chr7 (41155255-41155110) | |
| 472-620, gnl|monDom2|scaffold_105 (4060829-4060668) | |
| 472-620, gnl|monDom2|scaffold_105 (4060676-4060819) | |
| 472-620, gnl|oryCun1|scaffold_192005 (185-7) | |
| 472-620, gnl|oryCun1|scaffold_192005 (19-162) | |
| 472-620, gnl|panTro1|chr20 (52241303-52241491) | |
| 472-620, gnl|panTro1|chr4 (184098215-184098358) | |
| 472-620, gnl|rheMac2|chr19 (55958292-55958479) | |
| 472-620, gnl|rheMac2|chr6 (173789743-173789886) | |
| 472-620, gnl|rn3|chr1 (95530358-95530189) | |
| 472-620, gnl|rn3|chr14 (93900981-93901124) | |
| 472-620, gnl|tetNig1|chr19 (2350236-2350421) | |
| 472-620, gnl|tetNig1|chr19 (2350400-2350258) | |
| 472-620, gnl|xenTro1|scaffold_682 (353456-353623) | |
| 472-620, gnl|xenTro1|scaffold_682 (353613-353472) | |
| 822-975, gnl|bosTau2|chr18 (48772027-48772180) | |
| 822-975, gnl|canFam2|chr1 (109739823-109739960) | |
| 822-975, gnl|danRer3|chr3 (27667910-27667773) | |
| 822-975, gnl|dasNov1|scaffold_216633 (3918-3790) | |
| 822-975, gnl|echTel1|scaffold_312429 (294028-294159) | |
| 822-975, gnl|fr1|chrUn (268341371-268341508) | |
| 822-975, gnl|Hg17|chr19 (54881160-54881313) | |
| 822-975, gnl|hg17|chr5 (176625402-176625539) | |
| 822-975, gnl|loxAfr1|scaffold_1893 (142328-142219) | |
| 822-975, gnl|mm7|chr18 (4651209-4651079) | |
| 822-975, gnl|Mm7|chr7 (41154007-41153854) | |
| 822-975, gnl|monDom2|scaffold_105 (4060088-4060225) | |
| 822-975, gnl|oryCun1|scaffold_174843 (51654-51757) | |
| 822-975, gnl|panTro1|chr4 (184097875-184098012) | |
| 822-975, gnl|rheMac2|chr6 (173789420-173789548) | |
| 822-975, gnl|rn3|chr14 (93900650-93900778) | |
| 822-975, gnl|tetNig1|chr19 (2352295-2352158) | |
| 822-975, gnl|xenTro1|scaffold_682 (355341-355212) | |
| 1097-1397, gnl|bosTau2|chr18 (48774020-48774320) | |
| 1097-1397, gnl|Hg17|chr19 (54883231-54883517) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-680, gnl|bosTau2|chr3 (33085972-33086400) | |
| 249-680, gnl|Hg17|chr1 (107311546-107311974) | |
| 249-680, gnl|Mm7|chr3 (110069084-110068656) | |
| 255-421, gnl|bosTau2|chr18 (48768093-48768258) | |
| 255-421, gnl|canFam2|chr1 (109744259-109744095) | |
| 255-421, gnl|danRer3|chr3 (27666408-27666570) | |
| 255-421, gnl|dasNov1|scaffold_40398 (13778-13614) | |
| 255-421, gnl|echTel1|scaffold_202916 (4193-4029) | |
| 255-421, gnl|fr1|chrUn (8173291-8173131) | |
| 255-421, gnl|galGal2|chrUn (122481750-122481914) | |
| 255-421, gnl|hg17|chr19 (54876976-54877140) | |
| 255-421, gnl|Hg17|chr19 (54876977-54877142) | |
| 255-421, gnl|loxAfr1|scaffold_64840 (6500-6336) | |
| 255-421, gnl|mm7|chr7 (41157626-41157462) | |
| 255-421, gnl|Mm7|chr7 (41157623-41157458) | |
| 255-421, gnl|monDom2|scaffold_105 (4061210-4061046) | |
| 255-421, gnl|oryCun1|scaffold_192005 (1539-1375) | |
| 255-421, gnl|panTro1|chr20 (52239321-52239485) | |
| 255-421, gnl|rheMac2|chr19 (55956668-55956832) | |
| 255-421, gnl|rn3|chr1 (95532434-95532270) | |
| 255-421, gnl|tetNig1|chr19 (2349880-2350040) | |
| 255-421, gnl|xenTro1|scaffold_682 (352518-352682) | |
| 472-620, gnl|bosTau2|chr18 (48770199-48770348) | |
| 472-620, gnl|canFam2|chr1 (109742116-109741926) | |
| 472-620, gnl|canFam2|chr1 (109741945-109742088) | |
| 472-620, gnl|danRer3|chr3 (27667120-27667282) | |
| 472-620, gnl|danRer3|chr3 (27667378-27667137) | |
| 472-620, gnl|dasNov1|scaffold_40398 (13412-13552) | |
| 472-620, gnl|dasNov1|scaffold_9036 (51541-51699) | |
| 472-620, gnl|echTel1|scaffold_202916 (2746-2555) | |
| 472-620, gnl|echTel1|scaffold_312429 (294357-294499) | |
| 472-620, gnl|fr1|chrUn (8172901-8172709) | |
| 472-620, gnl|fr1|chrUn (268342286-268342428) | |
| 472-620, gnl|galGal2|chrUn (122492512-122492678) | |
| 472-620, gnl|hg17|chr19 (54878972-54879160) | |
| 472-620, gnl|Hg17|chr19 (54878991-54879139) | |
| 472-620, gnl|hg17|chr5 (176625742-176625885) | |
| 472-620, gnl|loxAfr1|scaffold_64840 (4028-3834) | |
| 472-620, gnl|loxAfr1|scaffold_64840 (3856-3997) | |
| 472-620, gnl|mm7|chr18 (4650876-4650734) | |
| 472-620, gnl|mm7|chr7 (41155276-41155106) | |
| 472-620, gnl|Mm7|chr7 (41155255-41155110) | |
| 472-620, gnl|monDom2|scaffold_105 (4060829-4060668) | |
| 472-620, gnl|monDom2|scaffold_105 (4060676-4060819) | |
| 472-620, gnl|oryCun1|scaffold_192005 (185-7) | |
| 472-620, gnl|oryCun1|scaffold_192005 (19-162) | |
| 472-620, gnl|panTro1|chr20 (52241303-52241491) | |
| 472-620, gnl|panTro1|chr4 (184098215-184098358) | |
| 472-620, gnl|rheMac2|chr19 (55958292-55958479) | |
| 472-620, gnl|rheMac2|chr6 (173789743-173789886) | |
| 472-620, gnl|rn3|chr1 (95530358-95530189) | |
| 472-620, gnl|rn3|chr14 (93900981-93901124) | |
| 472-620, gnl|tetNig1|chr19 (2350236-2350421) | |
| 472-620, gnl|tetNig1|chr19 (2350400-2350258) | |
| 472-620, gnl|xenTro1|scaffold_682 (353456-353623) | |
| 472-620, gnl|xenTro1|scaffold_682 (353613-353472) | |
| 822-975, gnl|bosTau2|chr18 (48772027-48772180) | |
| 822-975, gnl|canFam2|chr1 (109739823-109739960) | |
| 822-975, gnl|danRer3|chr3 (27667910-27667773) | |
| 822-975, gnl|dasNov1|scaffold_216633 (3918-3790) | |
| 822-975, gnl|echTel1|scaffold_312429 (294028-294159) | |
| 822-975, gnl|fr1|chrUn (268341371-268341508) | |
| 822-975, gnl|Hg17|chr19 (54881160-54881313) | |
| 822-975, gnl|hg17|chr5 (176625402-176625539) | |
| 822-975, gnl|loxAfr1|scaffold_1893 (142328-142219) | |
| 822-975, gnl|mm7|chr18 (4651209-4651079) | |
| 822-975, gnl|Mm7|chr7 (41154007-41153854) | |
| 822-975, gnl|monDom2|scaffold_105 (4060088-4060225) | |
| 822-975, gnl|oryCun1|scaffold_174843 (51654-51757) | |
| 822-975, gnl|panTro1|chr4 (184097875-184098012) | |
| 822-975, gnl|rheMac2|chr6 (173789420-173789548) | |
| 822-975, gnl|rn3|chr14 (93900650-93900778) | |
| 822-975, gnl|tetNig1|chr19 (2352295-2352158) | |
| 822-975, gnl|xenTro1|scaffold_682 (355341-355212) | |
| 1097-1397, gnl|bosTau2|chr18 (48774020-48774320) | |
| 1097-1397, gnl|Hg17|chr19 (54883231-54883517) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| nlu (0.766724) | |
| med (0.58126) | |
| clu (0.478583) | |
| eep (0.367692) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| eje (0.197668) | |
| fty (0.17584) | |
| cki (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.766724) | |
| med (0.58126) | |
| clu (0.478583) | |
| eep (0.367692) | |
| fhi (0.339155) | |
| cty (0.31224) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| eje (0.197668) | |
| fty (0.17584) | |
| cki (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |