Non-Coding RNA Search

Ss1.1-Pig4-TMW8052H11.5

Sequence:


               
               CGTGGTTGAAAAGCTAAAAGCTGTTGAAAGAAATAGACCAGCCAATAATACAGAACTTTT
AGCTGTTCAAGAAGGAATCAAAGTTCTTGAAACTTTGGTTACTCTTGGGGAAGAACAGAA
CAGAGTCCAATTACTTGCTCTTTTAGTTCCCACTTTGATCTCATACCTACTGGATGAAAA
GTCTTTTGCCTTAGCAAGCACAACTTCCAAAGATCTTCATGAGTTTGCACTCCAGAATTT
AATGCATATTGGACCTCTGTATCCACATGCTTTCAAGACAGTAATGGGAGCAGCTCCGGA
GTTGAAAGTACATTTGGAAACTGCTGTTCGAGCAAGCCAAGCTAGCAAAGCTAAAGCAGC
TGCCAGGCAGCCAGCCCCGACTGTGCATTCCGCACCAACAATTAAGCTAAAAACAAGTTT
TTTTTAACTTGCTGTCCCATTCATTTTGTTTATATTGTCAACTAGCAACTAATTAGTGAT
AGCCATTGTATCATTCCATGCTGTAAGTTTAATTCTATTTGTGTTTTTGGAATTAGATGC
TTCCAAGGAGGTTAAGTGAAATAATGCTCACACTGGTTTCTGATCTTGAAGGAATGACTT
TCTTTTTTATCATGTGAATGTGCTTCATTTTCTTCCCTAATAATGATTCTCTTTCATTAA
TATATTTTTTTAAACACTGAGCCATAGTCTTTTAAATTAAATGCAAAAAAGTTGTATCAT
GTAGTTGGGTGCCTGTTGATACTGTCAGGGAAGAAATAGGTCAGTATTTAGCATCTGTTA
TGCAAAAAATTGATTGAAAAAAACCTATAATTTAAATTTTGAAGTAACCAAAATAATGCA
AAGTGTCTATTTCATGGTGTGTATATTAAGAATAAAGTCACATTTTCTTAGCACTTCTCG
GAATATCCTTACCTTTCTGATAAACCTTTTTAGTTTCATGTTAGATTACTAAATTATGCT
TGTGTCTATTTTAGTTAACTCTCATGTAAAGATCCATTAAAGTGTTTCAAATGTGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGTTGAAAAGCTAAAAGCTGTTGAAAGAAATAGACCAGCCAATAATACAGAACTTTT
AGCTGTTCAAGAAGGAATCAAAGTTCTTGAAACTTTGGTTACTCTTGGGGAAGAACAGAA
CAGAGTCCAATTACTTGCTCTTTTAGTTCCCACTTTGATCTCATACCTACTGGATGAAAA
GTCTTTTGCCTTAGCAAGCACAACTTCCAAAGATCTTCATGAGTTTGCACTCCAGAATTT
AATGCATATTGGACCTCTGTATCCACATGCTTTCAAGACAGTAATGGGAGCAGCTCCGGA
GTTGAAAGTACATTTGGAAACTGCTGTTCGAGCAAGCCAAGCTAGCAAAGCTAAAGCAGC
TGCCAGGCAGCCAGCCCCGACTGTGCATTCCGCACCAACAATTAAGCTAAAAACAAGTTT
TTTTTAACTTGCTGTCCCATTCATTTTGTTTATATTGTCAACTAGCAACTAATTAGTGAT
AGCCATTGTATCATTCCATGCTGTAAGTTTAATTCTATTTGTGTTTTTGGAATTAGATGC
TTCCAAGGAGGTTAAGTGAAATAATGCTCACACTGGTTTCTGATCTTGAAGGAATGACTT
TCTTTTTTATCATGTGAATGTGCTTCATTTTCTTCCCTAATAATGATTCTCTTTCATTAA
TATATTTTTTTAAACACTGAGCCATAGTCTTTTAAATTAAATGCAAAAAAGTTGTATCAT
GTAGTTGGGTGCCTGTTGATACTGTCAGGGAAGAAATAGGTCAGTATTTAGCATCTGTTA
TGCAAAAAATTGATTGAAAAAAACCTATAATTTAAATTTTGAAGTAACCAAAATAATGCA
AAGTGTCTATTTCATGGTGTGTATATTAAGAATAAAGTCACATTTTCTTAGCACTTCTCG
GAATATCCTTACCTTTCTGATAAACCTTTTTAGTTTCATGTTAGATTACTAAATTATGCT
TGTGTCTATTTTAGTTAACTCTCATGTAAAGATCCATTAAAGTGTTTCAAATGTGGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884197|ref|XP_598532.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884197|ref|XP_598532.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               488-601, - strand, RNAz p=0.601938

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-601, - strand, RNAz p=0.601938

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               123-460, gnl|bosTau2|chr19 (36432816-36432478)
               

               
               123-460, gnl|Hg17|chr2 (37120588-37120250)
               

               
               123-460, gnl|Mm7|chr17 (77053890-77053559)
               


               
               488-1018, gnl|bosTau2|chr19 (36432477-36431933)
               

               
               488-1018, gnl|Hg17|chr2 (37120222-37119668)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-460, gnl|bosTau2|chr19 (36432816-36432478)
               

               
               123-460, gnl|Hg17|chr2 (37120588-37120250)
               

               
               123-460, gnl|Mm7|chr17 (77053890-77053559)
               


               
               488-1018, gnl|bosTau2|chr19 (36432477-36431933)
               

               
               488-1018, gnl|Hg17|chr2 (37120222-37119668)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               liv (0.292569)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	123-460, gnl\|bosTau2\|chr19 (36432816-36432478)
	123-460, gnl\|Hg17\|chr2 (37120588-37120250)
	123-460, gnl\|Mm7\|chr17 (77053890-77053559)

	488-1018, gnl\|bosTau2\|chr19 (36432477-36431933)
	488-1018, gnl\|Hg17\|chr2 (37120222-37119668)

	liv (0.292569)
	tra (0.246184)
	cmu (0.186393)
	fty (0.17584)
	fbs (0.175346)
	ski (0.146735)
	lin (0.145603)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	spc (0.113366)