Non-Coding RNA Search

Ss1.1-Pig4-TMW8052H14.3

Sequence:


               
               ATTTTAAGATAAATGTGATGGAGATAGTTGAGATATGTTGAGGAATAGTGTTTCTGGAAT
TAGGACTTTACTTAGAGTTTGAAACATTGAACCTAAAAATGACACCAGAAAATTCAAATA
GAGACCGTTAGGTCCTCATTCACACACTCAGTCCTCAGGAATCAGGACTCCTGAAAGGAG
TACTTACAATGCCTGGCCTGTCTACTGGACTCCGCCCGACACTTTTGCGCTTTTGAAGAT
GGCTGTTAACAGCTCTGACTCCACAGGCCTGTTTTCTGTAAAGTATGATATTGATTATTT
GGGCATAGACAATACATTTTTTAATTCCCCAAAGGCTTTCCTTCTTTGCCATTTACAGTT
ATTGTTTTCAGTAGAGAATAATAAAAGGGCAGAGAAGAAAGAGGTGAGTTTTTGGCCTTG
GTCCTCACTTTCTAGGAAAGAAGTTGGTTTTGCCCCTCATACTTTTACCTCACAAATAAT
TTGAGCTACCTATTGTACTCAGATGTACAGTTTTTGAAATTATTCGTGTACATCAGCATA
GCTCTACTCAGAGTTTCAATTTAAATACCATGCCAAGTTTGCATATCAGTCAGTTGCCTA
CACTTCTAAATGATTCATGCCAGTGTCTTCCTTCCTCACCCTGAATAATCTAGTGCTAGA
TTTATAAAATGCCTGGTTTATAAACCTTGGAAATTAAACCTAAGCACAGACCTTCAAGTG
TTCACGTTTTTGAGAAGCATAAGGCTTAATTCAGATGAATCACACTGATACACTGTACTA
TGCATAGAAAGTGGTGGGTGGCTTTCAGGGAAGACTATAATCTTAATAAAGCAATATTTA
GTATTGAAGACAGATACTGTTCTTTTTATGTTTCAGAATTCTGCCAAGTAAAACAAAAAT
TGCCAATAAAATAATCAGTATTAAAGAAGTGCCATGCAAGCTTCTGGCAATAGAAAACAT
CTGAAAACTGCATTCATTCAGCAGACATTTAAATGTCTATGATCCAGGTGCTTTGCCAGA
TGCCAGAGATACAGAGATGAAAGAATGCCTGTCCTTCAGAGACTTACAGCCCAGGGGAAG
CATTGCAGAGTTGATTAGTACCCCCAGTATTAGTTACCTGGATAAACATTCTAGTATTGC
TGCTGGTAGAAATTAGAGACCAGCCTTTGGGCATTTAAAAGTAAGAAAATGCTTTTCAGG
ACTGTATTGTCAGTGCAACTATTCAAGCATGTGAAGTAATGGGATATTTTTCCCCTGGAT
AAAGGCACTTTCCTGCCTGTCACTGATTAGCAGATACTGATTTGTTGCCATTAAGTAAGC
TTGACTTCTGATGTGTGCTCTATAAAGATTTTTTTTCTTGGTATTGTGATTTTTTTTTTC
ATTGACTCAATAATGACAAATTTAATGTATGTAATTGTCTATGCATTTTAAGTTAAACTG
CCTACAATGTGATTTGAGACATAAACATTTGTATTATGAACTGTAAGCAGTCTGTTTAAG
ATGTTAGGTTTTATCACCTGCTGCTGTATTTGTAAACAAAGACAAATGTTGCTTTAAGAC
GTAATTATAATTAGGAATAGTCTATGGATGTGATACTTGATATTTTTTAAGATAAACCTT
TGCTTTTGTGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAAGATAAATGTGATGGAGATAGTTGAGATATGTTGAGGAATAGTGTTTCTGGAAT
TAGGACTTTACTTAGAGTTTGAAACATTGAACCTAAAAATGACACCAGAAAATTCAAATA
GAGACCGTTAGGTCCTCATTCACACACTCAGTCCTCAGGAATCAGGACTCCTGAAAGGAG
TACTTACAATGCCTGGCCTGTCTACTGGACTCCGCCCGACACTTTTGCGCTTTTGAAGAT
GGCTGTTAACAGCTCTGACTCCACAGGCCTGTTTTCTGTAAAGTATGATATTGATTATTT
GGGCATAGACAATACATTTTTTAATTCCCCAAAGGCTTTCCTTCTTTGCCATTTACAGTT
ATTGTTTTCAGTAGAGAATAATAAAAGGGCAGAGAAGAAAGAGGTGAGTTTTTGGCCTTG
GTCCTCACTTTCTAGGAAAGAAGTTGGTTTTGCCCCTCATACTTTTACCTCACAAATAAT
TTGAGCTACCTATTGTACTCAGATGTACAGTTTTTGAAATTATTCGTGTACATCAGCATA
GCTCTACTCAGAGTTTCAATTTAAATACCATGCCAAGTTTGCATATCAGTCAGTTGCCTA
CACTTCTAAATGATTCATGCCAGTGTCTTCCTTCCTCACCCTGAATAATCTAGTGCTAGA
TTTATAAAATGCCTGGTTTATAAACCTTGGAAATTAAACCTAAGCACAGACCTTCAAGTG
TTCACGTTTTTGAGAAGCATAAGGCTTAATTCAGATGAATCACACTGATACACTGTACTA
TGCATAGAAAGTGGTGGGTGGCTTTCAGGGAAGACTATAATCTTAATAAAGCAATATTTA
GTATTGAAGACAGATACTGTTCTTTTTATGTTTCAGAATTCTGCCAAGTAAAACAAAAAT
TGCCAATAAAATAATCAGTATTAAAGAAGTGCCATGCAAGCTTCTGGCAATAGAAAACAT
CTGAAAACTGCATTCATTCAGCAGACATTTAAATGTCTATGATCCAGGTGCTTTGCCAGA
TGCCAGAGATACAGAGATGAAAGAATGCCTGTCCTTCAGAGACTTACAGCCCAGGGGAAG
CATTGCAGAGTTGATTAGTACCCCCAGTATTAGTTACCTGGATAAACATTCTAGTATTGC
TGCTGGTAGAAATTAGAGACCAGCCTTTGGGCATTTAAAAGTAAGAAAATGCTTTTCAGG
ACTGTATTGTCAGTGCAACTATTCAAGCATGTGAAGTAATGGGATATTTTTCCCCTGGAT
AAAGGCACTTTCCTGCCTGTCACTGATTAGCAGATACTGATTTGTTGCCATTAAGTAAGC
TTGACTTCTGATGTGTGCTCTATAAAGATTTTTTTTCTTGGTATTGTGATTTTTTTTTTC
ATTGACTCAATAATGACAAATTTAATGTATGTAATTGTCTATGCATTTTAAGTTAAACTG
CCTACAATGTGATTTGAGACATAAACATTTGTATTATGAACTGTAAGCAGTCTGTTTAAG
ATGTTAGGTTTTATCACCTGCTGCTGTATTTGTAAACAAAGACAAATGTTGCTTTAAGAC
GTAATTATAATTAGGAATAGTCTATGGATGTGATACTTGATATTTTTTAAGATAAACCTT
TGCTTTTGTGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-157, + strand, RNAz p=0.913058
               

               
               939-1057, - strand, RNAz p=0.757762

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, + strand, RNAz p=0.913058
               

               
               939-1057, - strand, RNAz p=0.757762

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-384, gnl|bosTau2|chr10 (45558286-45557917)
               

               
               1-384, gnl|Hg17|chr14 (54604329-54604691)
               


               
               429-1179, gnl|bosTau2|chr10 (45557738-45556991)
               

               
               429-1179, gnl|Hg17|chr14 (54604758-54605462)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr10 (45558286-45557917)
               

               
               1-384, gnl|Hg17|chr14 (54604329-54604691)
               


               
               429-1179, gnl|bosTau2|chr10 (45557738-45556991)
               

               
               429-1179, gnl|Hg17|chr14 (54604758-54605462)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               eep (0.122564)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               eep (0.122564)

	40-157, + strand, RNAz p=0.913058
	939-1057, - strand, RNAz p=0.757762

	1-384, gnl\|bosTau2\|chr10 (45558286-45557917)
	1-384, gnl\|Hg17\|chr14 (54604329-54604691)

	429-1179, gnl\|bosTau2\|chr10 (45557738-45556991)
	429-1179, gnl\|Hg17\|chr14 (54604758-54605462)

	pro (0.512033)
	spl (0.429553)
	hea (0.408998)
	aor (0.390549)
	liv (0.292569)
	lin (0.291206)
	fce (0.271592)
	tra (0.246184)
	fcc (0.197785)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	pla (0.133672)
	sug (0.127291)
	eep (0.122564)