Ss1.1-Pig4-TMW8052I11.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGCCCCTCCTTCTGCTCGCATCGCCACACAGCCGGAGCCGAGCCGCCGCCGCCGCCGC CGCCGCAGTCTCAGCCGCGGGCACTATGGCTTCTGGAGTTACAGTGAATGATGAAGTCAT CAAAGTTTTTAATGACATGAAAGTAAGGAAATCTTCTACACAAGAAGAGATCAAAAAAAG AAAGAAAGCAGTTCTCTTCTGTTTAAGTGATGACAAAAGACAAATAATTGTAGAGGAAGC AAAGCAGATCTTGGTGGGTGACATTGGTGATACTGTAGAGGACCCCTACACATCTTTTGT GAAGTTGCTACCTCTGAATGATTGCCGATATGCTTTGTACGATGCCACATACGAAACAAA AGAGTCTAAGAAAGAAGACCTAGTATTTATATTCTGGGCTCCTGAAAGTGCACCTTTAAA AAGCAAGATGATTTATGCTAGCTCTAAAGATGCCATTAAAAAGAAATTTACAGGTATTAA ACATGAGTGGCAAGTAAATGGCTTGGACGATATAAAGGACCGTTCAACACTTGGAGAGAA ATTGGGAGGCAACGTAGTCGTTTCACTTGAAGGAAAACCCTTATAAAATGACAGTCAAGT GCCATCCGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGTCGATTGGAATAGTATTAGG TGTTTTTTGTTTTTTTTTTTTCTTTCTTCTTTTTCCCACTGGGTCCTTCCAACACAGTGA ATGAAGGAAATACCATTCATGTAAGCAGCCTATCAGTGATTGCCATTAGACTGTTTAATA CTGTTACTTTTATGTAGAACCCAAGGAATGCCTTCCCCTCATATTTTAGCCAAAACAACT GATTACATGCCTCCCTTGCAGCAAGCACTACAATGAATGTGATTGTCAATGTGAATAGTT TAGAATACTGCAAAGGGTTAAGCTAATTGAATGCCTTGAAAGCATTATCCACTGGTAAGA TGGTAAACTTTATTCAGTATTATTTATAGTTGCACTTGATCGCAGTTCTGTGAGGCTCGA GCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTTTGTGACTTGGCAGCACGGATA TAACACTATGCATTGAAAGCACTTTTTTTGTAATGAGTTTAATCTCCCACCTCAAAAGGA ATGCCAATTAAGTTGTGCTAACTGTGTCATCAGCTTATCCTAGTACCTCAGTGTTCATTC CTGTTACCTGCGAATCTTCCTAAAAGAAATAGCAATTATTAATGCCTTTTTGTTTTCCAT TGAGTATACACTACTGAATAAGTGTAGGAGTTTTATGTTTACCATGTAAGTATGTAAGTC TTGCAACACTAAAGATATTTTGAATATCAGTCATGATGGCAATTTCTGTATAAAAGAGCC TTAAATGGAACATTGTTTTTGAGATCAACTCCCCACCCTCACAAAAATGGCCACGTTGCA ATAAAAATTGTGGCATATTAAAAAAAAAAAAAAAAATTTCCTTGGACATTTTGCAAAATA CCATGTGAAGCAACTCCTAGGATAAACAGCTATTATTAATCTCTGCACTGGTCATTTAAG AATTTTTTTGTACAATATTCATGCATGATATTTTCCAGTTTGTTGGGCATATTTGGTTTA AAAAAATATTCTATCCTAAATCCAATTAATATAAATTATTATTATTATAGAAGGGTACTT TTACAAGCTTTAGTTATTTATTTCCTTATGTGTTAATATGATCAGGAATTATTTTTTTGC ACTTTGACATAAATACTCTTTAATATCTGATTTGTTCTCTGGATAAGTTAGGGTAGTTAT TTTTTAATTCACGTTTACATTTCTAAGTTGAGTAGTAGAAGAAGCAGGGAGCTCTTACTG CGTATTTAGTCATAAAATAATTTGTAAAATGTTGTCCTTCAAAAGGTTAACAATACTTCT CATGTTTAGGAATTTTCATTTCAGCTACTATTTCTTAATATATTTCATAAATTGGGGGAA AAATGATATAGCTGTCTTAAACATTAGTAGTGGGGTTTGGCTGTGATCCAGACAGCTCTC CTTATAGAGAATTTGATCTGCTCACTGTGAGCAGTTTGCTGTTAGCCAGAGCTATTTATG GCAAACACATGCTTTTGTATCTTGTCATAGTTATCCACAAATGGCAAAACTGGACTTGAT TCTACTGGTATGCAAAACAGGCATGCTAGTAAGCAGTGGATTTTAACTTAGAACTTAACC CCATAGCTCTGAAGAATGCTCTTATTAGAAAACAGGAAATGAAAAAAATCCCCCTTTTTT CAGTGTGTGGAAGTAATTTGAGGTTAATGAAATATTATTCCATATTTCAAAAGGTTTTTT CAGATGAAAACAAAAATAGAAGTTAAAGTCTAGGTTTCTGTTTAAAATTATATGAATGGC TTGGAATCTTTTGCACTGAGCAATTTTATTTCAGGCTTCCAGCTGTCCCTGTGAATTACC CTGGACATTTTGATGGCTTTTTGGTAAGGCCAAACTCATAAGTAAAGCATGAGAGTACAC TAAACCATATGAGTAACTGATATTTGTACCATGACATTTTTCATTATTTTCTTCATTCTT TGAAAAAATAAGGGACTCTAAATAAGTTATATGGTTTATTTTGTTTTTATAGCTGATTTC TCAACTTTCGTAAATGCCTCTTTAATTATATAATAACCTCAGAGATTAAATATGGCTTTA AACTGTGGTACTCTGATTTGTTAGATTGACAGAATTGATAGTAATATTAAATTTCTCTTT GAAAAACATCTTCGTGCATAAAGCCAAAAATAATGATAATTAATGGTTCATGTTACTTGA AACTAATTTGGCATTTGAAATGATCATTTTACTTTACAATCATTTACAGTGAAACAATGT TCCAGTTAGCTTTAAAAGGTATACGGTGCTAATTAGTAAAATACTGAGGACAATATTTTA CTGCTAGCTTGCAAAATTATAAGTGTTTAAAAAAATAAAATATATGAAAATATAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGCCCCTCCTTCTGCTCGCATCGCCACACAGCCGGAGCCGAGCCGCCGCCGCCGCCGC CGCCGCAGTCTCAGCCGCGGGCACTATGGCTTCTGGAGTTACAGTGAATGATGAAGTCAT CAAAGTTTTTAATGACATGAAAGTAAGGAAATCTTCTACACAAGAAGAGATCAAAAAAAG AAAGAAAGCAGTTCTCTTCTGTTTAAGTGATGACAAAAGACAAATAATTGTAGAGGAAGC AAAGCAGATCTTGGTGGGTGACATTGGTGATACTGTAGAGGACCCCTACACATCTTTTGT GAAGTTGCTACCTCTGAATGATTGCCGATATGCTTTGTACGATGCCACATACGAAACAAA AGAGTCTAAGAAAGAAGACCTAGTATTTATATTCTGGGCTCCTGAAAGTGCACCTTTAAA AAGCAAGATGATTTATGCTAGCTCTAAAGATGCCATTAAAAAGAAATTTACAGGTATTAA ACATGAGTGGCAAGTAAATGGCTTGGACGATATAAAGGACCGTTCAACACTTGGAGAGAA ATTGGGAGGCAACGTAGTCGTTTCACTTGAAGGAAAACCCTTATAAAATGACAGTCAAGT GCCATCCGGATCTTAAGGAGCTTCCATTTCTCCAGCTCAGTCGATTGGAATAGTATTAGG TGTTTTTTGTTTTTTTTTTTTCTTTCTTCTTTTTCCCACTGGGTCCTTCCAACACAGTGA ATGAAGGAAATACCATTCATGTAAGCAGCCTATCAGTGATTGCCATTAGACTGTTTAATA CTGTTACTTTTATGTAGAACCCAAGGAATGCCTTCCCCTCATATTTTAGCCAAAACAACT GATTACATGCCTCCCTTGCAGCAAGCACTACAATGAATGTGATTGTCAATGTGAATAGTT TAGAATACTGCAAAGGGTTAAGCTAATTGAATGCCTTGAAAGCATTATCCACTGGTAAGA TGGTAAACTTTATTCAGTATTATTTATAGTTGCACTTGATCGCAGTTCTGTGAGGCTCGA GCATTCATACACCTCACCTGCCTTGGCAAGCCTATTTTTTGTGACTTGGCAGCACGGATA TAACACTATGCATTGAAAGCACTTTTTTTGTAATGAGTTTAATCTCCCACCTCAAAAGGA ATGCCAATTAAGTTGTGCTAACTGTGTCATCAGCTTATCCTAGTACCTCAGTGTTCATTC CTGTTACCTGCGAATCTTCCTAAAAGAAATAGCAATTATTAATGCCTTTTTGTTTTCCAT TGAGTATACACTACTGAATAAGTGTAGGAGTTTTATGTTTACCATGTAAGTATGTAAGTC TTGCAACACTAAAGATATTTTGAATATCAGTCATGATGGCAATTTCTGTATAAAAGAGCC TTAAATGGAACATTGTTTTTGAGATCAACTCCCCACCCTCACAAAAATGGCCACGTTGCA ATAAAAATTGTGGCATATTAAAAAAAAAAAAAAAAATTTCCTTGGACATTTTGCAAAATA CCATGTGAAGCAACTCCTAGGATAAACAGCTATTATTAATCTCTGCACTGGTCATTTAAG AATTTTTTTGTACAATATTCATGCATGATATTTTCCAGTTTGTTGGGCATATTTGGTTTA AAAAAATATTCTATCCTAAATCCAATTAATATAAATTATTATTATTATAGAAGGGTACTT TTACAAGCTTTAGTTATTTATTTCCTTATGTGTTAATATGATCAGGAATTATTTTTTTGC ACTTTGACATAAATACTCTTTAATATCTGATTTGTTCTCTGGATAAGTTAGGGTAGTTAT TTTTTAATTCACGTTTACATTTCTAAGTTGAGTAGTAGAAGAAGCAGGGAGCTCTTACTG CGTATTTAGTCATAAAATAATTTGTAAAATGTTGTCCTTCAAAAGGTTAACAATACTTCT CATGTTTAGGAATTTTCATTTCAGCTACTATTTCTTAATATATTTCATAAATTGGGGGAA AAATGATATAGCTGTCTTAAACATTAGTAGTGGGGTTTGGCTGTGATCCAGACAGCTCTC CTTATAGAGAATTTGATCTGCTCACTGTGAGCAGTTTGCTGTTAGCCAGAGCTATTTATG GCAAACACATGCTTTTGTATCTTGTCATAGTTATCCACAAATGGCAAAACTGGACTTGAT TCTACTGGTATGCAAAACAGGCATGCTAGTAAGCAGTGGATTTTAACTTAGAACTTAACC CCATAGCTCTGAAGAATGCTCTTATTAGAAAACAGGAAATGAAAAAAATCCCCCTTTTTT CAGTGTGTGGAAGTAATTTGAGGTTAATGAAATATTATTCCATATTTCAAAAGGTTTTTT CAGATGAAAACAAAAATAGAAGTTAAAGTCTAGGTTTCTGTTTAAAATTATATGAATGGC TTGGAATCTTTTGCACTGAGCAATTTTATTTCAGGCTTCCAGCTGTCCCTGTGAATTACC CTGGACATTTTGATGGCTTTTTGGTAAGGCCAAACTCATAAGTAAAGCATGAGAGTACAC TAAACCATATGAGTAACTGATATTTGTACCATGACATTTTTCATTATTTTCTTCATTCTT TGAAAAAATAAGGGACTCTAAATAAGTTATATGGTTTATTTTGTTTTTATAGCTGATTTC TCAACTTTCGTAAATGCCTCTTTAATTATATAATAACCTCAGAGATTAAATATGGCTTTA AACTGTGGTACTCTGATTTGTTAGATTGACAGAATTGATAGTAATATTAAATTTCTCTTT GAAAAACATCTTCGTGCATAAAGCCAAAAATAATGATAATTAATGGTTCATGTTACTTGA AACTAATTTGGCATTTGAAATGATCATTTTACTTTACAATCATTTACAGTGAAACAATGT TCCAGTTAGCTTTAAAAGGTATACGGTGCTAATTAGTAAAATACTGAGGACAATATTTTA CTGCTAGCTTGCAAAATTATAAGTGTTTAAAAAAATAAAATATATGAAAATATAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 974-1089, - strand, RNAz p=0.688965 | |
| 1409-1526, - strand, RNAz p=0.667864 | |
| 1983-2220, - strand, RNAz p=0.935881 | |
| 2839-2957, - strand, RNAz p=0.991437 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 974-1089, - strand, RNAz p=0.688965 | |
| 1409-1526, - strand, RNAz p=0.667864 | |
| 1983-2220, - strand, RNAz p=0.935881 | |
| 2839-2957, - strand, RNAz p=0.991437 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 88-397, gnl|bosTau2|chr13 (23543980-23544289) | |
| 88-397, gnl|canFam2|chr24 (8401126-8400841) | |
| 88-397, gnl|canFam2|chr24 (8401169-8400809) | |
| 88-397, gnl|danRer3|chrNA (230023815-230024086) | |
| 88-397, gnl|danRer3|chrNA (230023787-230024124) | |
| 88-397, gnl|dasNov1|scaffold_40599 (8024-7661) | |
| 88-397, gnl|dasNov1|scaffold_60694 (5414-5129) | |
| 88-397, gnl|echTel1|scaffold_319821 (5553-5836) | |
| 88-397, gnl|echTel1|scaffold_319821 (5552-5877) | |
| 88-397, gnl|fr1|chrUn (186345645-186345330) | |
| 88-397, gnl|fr1|chrUn (93241890-93241572) | |
| 88-397, gnl|galGal2|chr14 (16700074-16700359) | |
| 88-397, gnl|galGal2|chr14 (16700057-16700387) | |
| 88-397, gnl|hg17|chr12 (6864321-6864605) | |
| 88-397, gnl|hg17|chr20 (17529342-17529703) | |
| 88-397, gnl|Hg17|chr20 (17529382-17529691) | |
| 88-397, gnl|loxAfr1|scaffold_31353 (20441-20156) | |
| 88-397, gnl|loxAfr1|scaffold_31353 (20459-20122) | |
| 88-397, gnl|mm7|chr2 (143679205-143679559) | |
| 88-397, gnl|Mm7|chr2 (143679241-143679550) | |
| 88-397, gnl|mm7|chr9 (8178076-8177796) | |
| 88-397, gnl|monDom2|scaffold_1 (52090955-52091247) | |
| 88-397, gnl|monDom2|scaffold_1 (52090928-52091282) | |
| 88-397, gnl|oryCun1|scaffold_102464 (994-639) | |
| 88-397, gnl|oryCun1|scaffold_165620 (23383-23098) | |
| 88-397, gnl|panTro1|chr10 (7401097-7401381) | |
| 88-397, gnl|panTro1|chr21 (17380139-17380500) | |
| 88-397, gnl|rheMac2|chr10 (50927216-50927577) | |
| 88-397, gnl|rheMac2|chr11 (7067434-7067719) | |
| 88-397, gnl|rn3|chr20 (661428-661713) | |
| 88-397, gnl|rn3|chr3 (132285272-132285625) | |
| 88-397, gnl|tetNig1|chr1 (8203688-8203406) | |
| 88-397, gnl|tetNig1|chr1 (8203703-8203374) | |
| 88-397, gnl|xenTro1|scaffold_117 (913212-913501) | |
| 88-397, gnl|xenTro1|scaffold_521 (594217-593870) | |
| 467-2998, gnl|bosTau2|chr21 (29516284-29513769) | |
| 467-2998, gnl|Hg17|chr14 (34251941-34249398) | |
| 467-2998, gnl|Mm7|chr12 (52829604-52827166) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-397, gnl|bosTau2|chr13 (23543980-23544289) | |
| 88-397, gnl|canFam2|chr24 (8401126-8400841) | |
| 88-397, gnl|canFam2|chr24 (8401169-8400809) | |
| 88-397, gnl|danRer3|chrNA (230023815-230024086) | |
| 88-397, gnl|danRer3|chrNA (230023787-230024124) | |
| 88-397, gnl|dasNov1|scaffold_40599 (8024-7661) | |
| 88-397, gnl|dasNov1|scaffold_60694 (5414-5129) | |
| 88-397, gnl|echTel1|scaffold_319821 (5553-5836) | |
| 88-397, gnl|echTel1|scaffold_319821 (5552-5877) | |
| 88-397, gnl|fr1|chrUn (186345645-186345330) | |
| 88-397, gnl|fr1|chrUn (93241890-93241572) | |
| 88-397, gnl|galGal2|chr14 (16700074-16700359) | |
| 88-397, gnl|galGal2|chr14 (16700057-16700387) | |
| 88-397, gnl|hg17|chr12 (6864321-6864605) | |
| 88-397, gnl|hg17|chr20 (17529342-17529703) | |
| 88-397, gnl|Hg17|chr20 (17529382-17529691) | |
| 88-397, gnl|loxAfr1|scaffold_31353 (20441-20156) | |
| 88-397, gnl|loxAfr1|scaffold_31353 (20459-20122) | |
| 88-397, gnl|mm7|chr2 (143679205-143679559) | |
| 88-397, gnl|Mm7|chr2 (143679241-143679550) | |
| 88-397, gnl|mm7|chr9 (8178076-8177796) | |
| 88-397, gnl|monDom2|scaffold_1 (52090955-52091247) | |
| 88-397, gnl|monDom2|scaffold_1 (52090928-52091282) | |
| 88-397, gnl|oryCun1|scaffold_102464 (994-639) | |
| 88-397, gnl|oryCun1|scaffold_165620 (23383-23098) | |
| 88-397, gnl|panTro1|chr10 (7401097-7401381) | |
| 88-397, gnl|panTro1|chr21 (17380139-17380500) | |
| 88-397, gnl|rheMac2|chr10 (50927216-50927577) | |
| 88-397, gnl|rheMac2|chr11 (7067434-7067719) | |
| 88-397, gnl|rn3|chr20 (661428-661713) | |
| 88-397, gnl|rn3|chr3 (132285272-132285625) | |
| 88-397, gnl|tetNig1|chr1 (8203688-8203406) | |
| 88-397, gnl|tetNig1|chr1 (8203703-8203374) | |
| 88-397, gnl|xenTro1|scaffold_117 (913212-913501) | |
| 88-397, gnl|xenTro1|scaffold_521 (594217-593870) | |
| 467-2998, gnl|bosTau2|chr21 (29516284-29513769) | |
| 467-2998, gnl|Hg17|chr14 (34251941-34249398) | |
| 467-2998, gnl|Mm7|chr12 (52829604-52827166) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| isp (5.71429) | |
| bfe (1.94815) | |
| tbr (1.85014) | |
| vin (1.66279) | |
| ste (1.21687) | |
| aor (0.976372) | |
| nms (0.855432) | |
| ssp (0.813118) | |
| ldo (0.679018) | |
| kid (0.648677) | |
| bla (0.497389) | |
| cbe (0.478469) | |
| hea (0.408998) | |
| ese (0.379507) | |
| eru (0.360144) | |
| gul (0.355177) | |
| ebs (0.354904) | |
| fco (0.314416) | |
| fat (0.294855) | |
| lin (0.291206) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ret (0.257467) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| mga (0.160205) | |
| lun (0.150489) | |
| liv (0.146284) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (5.71429) | |
| bfe (1.94815) | |
| tbr (1.85014) | |
| vin (1.66279) | |
| ste (1.21687) | |
| aor (0.976372) | |
| nms (0.855432) | |
| ssp (0.813118) | |
| ldo (0.679018) | |
| kid (0.648677) | |
| bla (0.497389) | |
| cbe (0.478469) | |
| hea (0.408998) | |
| ese (0.379507) | |
| eru (0.360144) | |
| gul (0.355177) | |
| ebs (0.354904) | |
| fco (0.314416) | |
| fat (0.294855) | |
| lin (0.291206) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ret (0.257467) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| mga (0.160205) | |
| lun (0.150489) | |
| liv (0.146284) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ecc (0.115035) |