Non-Coding RNA Search

Ss1.1-Pig4-TMW8052I13.3

Sequence:


               
               TTTTAAGCAACATGAAGTATCTCTGTTTTGAAACCTGTGTATTTCTTTTTCAGGGTGTCT
GCATGCAGTGGCATTGTAAGTGCTAGGACCCCTGATAACCCAGGCGTGAGCCCTTGGTGA
AGGCTTGCTGCCCTTTGCCGTGTCTCCTTCCTGGATATCTTAGTTGCTTGTTTGGGCAGC
ACACTAATTAATAGTACTGAAAACACTGTGATAAACTGGAGTTTAATTTAGCATATAGCC
AGTGCAGGGTATCTGGGGGCTGTCCGTGCTACCCTGACTCGTAGCTAACAATCCTAATTA
TACCTAGTGCCATACTGACTTCTTGGTAATGACCCTGTGGAAACCAACGTGATTTGATGT
AAATACAGGCTCAAGACTCACCGTCCTCCAGCTTCTGTATATAATTGTGTTGTATAGTCT
CAGAGTACATTCTAACCCTCCGTGTCTAATCACGGTATCGGTAATCTTCTCCGTGAATCT
TAGGTTTCCTCCAGAAATAGGCCGTTATTTGAGAAAGTTGACGGTGTGCACTTTCAGACT
TTAATTACATTTCCAGGCAAATCACTGTAATGCAAATGGTACTGGAAAAATAACTGAATA
GACTTGCTAAATGGTAAATGCACTACAAGAGGAACCTTTTAGATTATTTAATATGTACAG
AATACATTAGAAAAAAAATTTATTACAGAATTCTAACTCTGCAGTCTGAATAGTGGAAAA
CCCTATGTAAATCAGATGGCTGTCAGATCGAAAATGACTTTGCTAAATTTGAGAATTTCT
TTTTACATGACTAATGTAGAGTGGTTTGTATAATAAAACAGGGTTTGGCAGGTTTTGTTA
CAGAGAGCATGGTCTGCTGAAGATTTTTTAAAATGTATTTTTCTAGATTAACTGCTGTAT
ATGAAATGTCTAATCTGAATAAAGAAAGCTATAAGAGGTTTAGAGATTTTTTTCCATCGG
AAACGTGCATTTTGGTTTTTAATTTTTTTTTTGTTTGTTTTTGCATTGACTGGCACACTC
TTATACCTCATTTTTAAAAAGTCAACGGAATCCAATATTTCCTGTGGCAAATATGTTTTC
TTCATTTCACACCTTTTCTGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAGCAACATGAAGTATCTCTGTTTTGAAACCTGTGTATTTCTTTTTCAGGGTGTCT
GCATGCAGTGGCATTGTAAGTGCTAGGACCCCTGATAACCCAGGCGTGAGCCCTTGGTGA
AGGCTTGCTGCCCTTTGCCGTGTCTCCTTCCTGGATATCTTAGTTGCTTGTTTGGGCAGC
ACACTAATTAATAGTACTGAAAACACTGTGATAAACTGGAGTTTAATTTAGCATATAGCC
AGTGCAGGGTATCTGGGGGCTGTCCGTGCTACCCTGACTCGTAGCTAACAATCCTAATTA
TACCTAGTGCCATACTGACTTCTTGGTAATGACCCTGTGGAAACCAACGTGATTTGATGT
AAATACAGGCTCAAGACTCACCGTCCTCCAGCTTCTGTATATAATTGTGTTGTATAGTCT
CAGAGTACATTCTAACCCTCCGTGTCTAATCACGGTATCGGTAATCTTCTCCGTGAATCT
TAGGTTTCCTCCAGAAATAGGCCGTTATTTGAGAAAGTTGACGGTGTGCACTTTCAGACT
TTAATTACATTTCCAGGCAAATCACTGTAATGCAAATGGTACTGGAAAAATAACTGAATA
GACTTGCTAAATGGTAAATGCACTACAAGAGGAACCTTTTAGATTATTTAATATGTACAG
AATACATTAGAAAAAAAATTTATTACAGAATTCTAACTCTGCAGTCTGAATAGTGGAAAA
CCCTATGTAAATCAGATGGCTGTCAGATCGAAAATGACTTTGCTAAATTTGAGAATTTCT
TTTTACATGACTAATGTAGAGTGGTTTGTATAATAAAACAGGGTTTGGCAGGTTTTGTTA
CAGAGAGCATGGTCTGCTGAAGATTTTTTAAAATGTATTTTTCTAGATTAACTGCTGTAT
ATGAAATGTCTAATCTGAATAAAGAAAGCTATAAGAGGTTTAGAGATTTTTTTCCATCGG
AAACGTGCATTTTGGTTTTTAATTTTTTTTTTGTTTGTTTTTGCATTGACTGGCACACTC
TTATACCTCATTTTTAAAAAGTCAACGGAATCCAATATTTCCTGTGGCAAATATGTTTTC
TTCATTTCACACCTTTTCTGCTCC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-143, gnl|bosTau2|chrX (16371860-16372001)
               

               
               1-143, gnl|Hg17|chr10 (32136173-32136030)
               

               
               1-143, gnl|Mm7|chr18 (6230021-6229880)
               


               
               257-1103, gnl|bosTau2|chrX (16372363-16373202)
               

               
               257-1103, gnl|Hg17|chr10 (32135895-32135092)
               

               
               257-1103, gnl|Mm7|chr18 (6229744-6228944)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chrX (16371860-16372001)
               

               
               1-143, gnl|Hg17|chr10 (32136173-32136030)
               

               
               1-143, gnl|Mm7|chr18 (6230021-6229880)
               


               
               257-1103, gnl|bosTau2|chrX (16372363-16373202)
               

               
               257-1103, gnl|Hg17|chr10 (32135895-32135092)
               

               
               257-1103, gnl|Mm7|chr18 (6229744-6228944)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	1-143, gnl\|bosTau2\|chrX (16371860-16372001)
	1-143, gnl\|Hg17\|chr10 (32136173-32136030)
	1-143, gnl\|Mm7\|chr18 (6230021-6229880)

	257-1103, gnl\|bosTau2\|chrX (16372363-16373202)
	257-1103, gnl\|Hg17\|chr10 (32135895-32135092)
	257-1103, gnl\|Mm7\|chr18 (6229744-6228944)

	tbr (0.154178)
	ste (0.135208)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)