Ss1.1-Pig4-TMW8052I15.3
|
CGCACACCCCGGTGCCGCCCCACGCCAGGCGCTTCGCCAGAGCCATCGACAGCAGCCGCG
ACCTCCTGCACAGGATCAAGGATGAGGTGGGCGCGCCAGGAATAGTGGTTGGAGTCTCTG
TGGATGGAAAAGAAGTTTGGTCAGAAGGTTTAGGTTATGCTGATGTTGAGAACCGTGTAC
CATGCAAGCCAGAGACAGTTATGAGAATTGCCAGTATCAGCAAAAGCCTCACCATGGTTG
CTCTTGCAAAATTATGGGAAGCAGGGAAACTAGATCTTGATATTCCAGTACAACATTATG
TTCCTGAATTCCCAGAAAAAGAATATGAAGGTGAAAAGGTTTCTGTCACAACAAGATTAT
TGATTTCCCACTTAAGTGGAATTCGTCATTATGAAAAGGACATGAAAAAGGTGAAAGAAG
AGAAAGCTTATAAAGCTTTGAAGATGATGAAAGAGACAGAATCTGACCAGGAAAAAGACT
TAAAAGAAAAAGGAGGCAAAAGTAATGAAAAGAATGACTTTGCTGCTAAAACTAAGATAG
AGCAAGATAATGAAGCCAAGAGCCGGAATTCAAAACCTTGCAAGAAGAAAAATGATTTTG
AACAAGGTGAATTGTATTTGAAAGAAAAGTTTGAAAATTCAATTGAATCCCTACGATTAT
TTAAAAATGACCCTTTGTTTTTTAAACCTGGTAGTCAGTTTTTGTATTCAACTTTTGGCT
ATACCCTACTGGCAGCCATAGTAGAAAGAGCTTCAGGATATAAATATTTGGACTATATGC
AGAAAATATTCCTCTGAAATTTGGGAATGCAATGCTGTATGGTTACCAAGTCGGGCTGTT
TAAGAACTCAAATGAAAATCTTTTACCAGGATATCTCAAACCAGAAACCATGCTTATGAT
TTGGACACCAGTCCCTAACACAGAGATGTCTTGGGATAAAGAGGGTAAATATGCAATGGC
GTGGGGTGTTGTGGAAAAGAAGCAAACGTATGGTTCTTGCAGGAAGCAACGGCATTATGC
CTCACATACTGGAGGTGCAGTGGGTGCCAGTAGTGTCTTGCTGGTCCTTCCTGAGGAACT
GGATGCAGAAGCTCTAAATAACAAGGTTCCCCCAAGAGGAATAGTTGTTTCTATCATATG
CAACATGCAGTCTGTTGGCCTCAACAGCACTGCTTTAAAGATTGCTCTGGAATTTGATAA
AGACAGATCAGACATACCTTAACGTCATGGATGCAAAATGAGGTGTTTGGATTTGCTTGG
GATTTTTTTTCTTTTTTTGGAAACATTAAAGTCCTCAAATACATGAGAGTTTAAAGAATA
AATTTTGTAATAGAGTATAATTGAATGCAGAGAACTATGTATCTCTAATTGCTTAATTTT
GTAATTGTCTTTTGTAGGATTAGTTCTTGATACTCAGGGAAGTTATTATATTTTTAATTT
TTGAAAAAAGTGTCAGCTCTTGAAATAAAATATTCTGATAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCACACCCCGGTGCCGCCCCACGCCAGGCGCTTCGCCAGAGCCATCGACAGCAGCCGCG
ACCTCCTGCACAGGATCAAGGATGAGGTGGGCGCGCCAGGAATAGTGGTTGGAGTCTCTG
TGGATGGAAAAGAAGTTTGGTCAGAAGGTTTAGGTTATGCTGATGTTGAGAACCGTGTAC
CATGCAAGCCAGAGACAGTTATGAGAATTGCCAGTATCAGCAAAAGCCTCACCATGGTTG
CTCTTGCAAAATTATGGGAAGCAGGGAAACTAGATCTTGATATTCCAGTACAACATTATG
TTCCTGAATTCCCAGAAAAAGAATATGAAGGTGAAAAGGTTTCTGTCACAACAAGATTAT
TGATTTCCCACTTAAGTGGAATTCGTCATTATGAAAAGGACATGAAAAAGGTGAAAGAAG
AGAAAGCTTATAAAGCTTTGAAGATGATGAAAGAGACAGAATCTGACCAGGAAAAAGACT
TAAAAGAAAAAGGAGGCAAAAGTAATGAAAAGAATGACTTTGCTGCTAAAACTAAGATAG
AGCAAGATAATGAAGCCAAGAGCCGGAATTCAAAACCTTGCAAGAAGAAAAATGATTTTG
AACAAGGTGAATTGTATTTGAAAGAAAAGTTTGAAAATTCAATTGAATCCCTACGATTAT
TTAAAAATGACCCTTTGTTTTTTAAACCTGGTAGTCAGTTTTTGTATTCAACTTTTGGCT
ATACCCTACTGGCAGCCATAGTAGAAAGAGCTTCAGGATATAAATATTTGGACTATATGC
AGAAAATATTCCTCTGAAATTTGGGAATGCAATGCTGTATGGTTACCAAGTCGGGCTGTT
TAAGAACTCAAATGAAAATCTTTTACCAGGATATCTCAAACCAGAAACCATGCTTATGAT
TTGGACACCAGTCCCTAACACAGAGATGTCTTGGGATAAAGAGGGTAAATATGCAATGGC
GTGGGGTGTTGTGGAAAAGAAGCAAACGTATGGTTCTTGCAGGAAGCAACGGCATTATGC
CTCACATACTGGAGGTGCAGTGGGTGCCAGTAGTGTCTTGCTGGTCCTTCCTGAGGAACT
GGATGCAGAAGCTCTAAATAACAAGGTTCCCCCAAGAGGAATAGTTGTTTCTATCATATG
CAACATGCAGTCTGTTGGCCTCAACAGCACTGCTTTAAAGATTGCTCTGGAATTTGATAA
AGACAGATCAGACATACCTTAACGTCATGGATGCAAAATGAGGTGTTTGGATTTGCTTGG
GATTTTTTTTCTTTTTTTGGAAACATTAAAGTCCTCAAATACATGAGAGTTTAAAGAATA
AATTTTGTAATAGAGTATAATTGAATGCAGAGAACTATGTATCTCTAATTGCTTAATTTT
GTAATTGTCTTTTGTAGGATTAGTTCTTGATACTCAGGGAAGTTATTATATTTTTAATTT
TTGAAAAAAGTGTCAGCTCTTGAAATAAAATATTCTGATAAAAAAAAA
|
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gi|37182540|gb|AAQ89072.1| |
Protein identifier
|
gi|37182540|gb|AAQ89072.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
337-692, gnl|bosTau2|chr10 (31024697-31025052) |
|
337-692, gnl|canFam2|chr30 (30720491-30720938) |
|
337-692, gnl|danRer3|chrNA (245158820-245158471) |
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337-692, gnl|echTel1|scaffold_111097 (476-894) |
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337-692, gnl|fr1|chrUn (201012629-201013016) |
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337-692, gnl|galGal2|chr10 (4938982-4938529) |
|
337-692, gnl|hg17|chr15 (61206564-61206996) |
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337-692, gnl|Hg17|chr15 (61206603-61206943) |
|
337-692, gnl|loxAfr1|scaffold_3344 (84729-84282) |
|
337-692, gnl|mm7|chr9 (67002458-67002000) |
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337-692, gnl|Mm7|chr9 (67002409-67002051) |
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337-692, gnl|monDom2|scaffold_12 (50659852-50659406) |
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337-692, gnl|oryCun1|scaffold_192804 (128149-127702) |
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337-692, gnl|panTro1|chr16 (61663132-61663564) |
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337-692, gnl|rheMac2|chr7 (41500287-41500719) |
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337-692, gnl|rn3|chr8 (71297818-71297363) |
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337-692, gnl|tetNig1|chr13 (6847165-6846802) |
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337-692, gnl|xenTro1|scaffold_62 (1139562-1139944) |
| |
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793-1483, gnl|bosTau2|chr10 (31036870-31037568) |
|
793-1483, gnl|Hg17|chr15 (61220634-61221311) |
|
793-1483, gnl|Mm7|chr9 (66987564-66986855) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
337-692, gnl|bosTau2|chr10 (31024697-31025052) |
|
337-692, gnl|canFam2|chr30 (30720491-30720938) |
|
337-692, gnl|danRer3|chrNA (245158820-245158471) |
|
337-692, gnl|echTel1|scaffold_111097 (476-894) |
|
337-692, gnl|fr1|chrUn (201012629-201013016) |
|
337-692, gnl|galGal2|chr10 (4938982-4938529) |
|
337-692, gnl|hg17|chr15 (61206564-61206996) |
|
337-692, gnl|Hg17|chr15 (61206603-61206943) |
|
337-692, gnl|loxAfr1|scaffold_3344 (84729-84282) |
|
337-692, gnl|mm7|chr9 (67002458-67002000) |
|
337-692, gnl|Mm7|chr9 (67002409-67002051) |
|
337-692, gnl|monDom2|scaffold_12 (50659852-50659406) |
|
337-692, gnl|oryCun1|scaffold_192804 (128149-127702) |
|
337-692, gnl|panTro1|chr16 (61663132-61663564) |
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337-692, gnl|rheMac2|chr7 (41500287-41500719) |
|
337-692, gnl|rn3|chr8 (71297818-71297363) |
|
337-692, gnl|tetNig1|chr13 (6847165-6846802) |
|
337-692, gnl|xenTro1|scaffold_62 (1139562-1139944) |
| |
|
793-1483, gnl|bosTau2|chr10 (31036870-31037568) |
|
793-1483, gnl|Hg17|chr15 (61220634-61221311) |
|
793-1483, gnl|Mm7|chr9 (66987564-66986855) |
|
kid (0.518941) |
|
sag (0.36543) |
|
gul (0.355177) |
|
cte (0.29274) |
|
col (0.195008) |
|
ill (0.175593) |
|
cki (0.165235) |
|
tbr (0.154178) |
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cag (0.151194) |
|
lun (0.150489) |
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bfe (0.149858) |
|
spl (0.143184) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
eep (0.122564) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
kid (0.518941) |
|
sag (0.36543) |
|
gul (0.355177) |
|
cte (0.29274) |
|
col (0.195008) |
|
ill (0.175593) |
|
cki (0.165235) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
spl (0.143184) |
|
csk (0.140746) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
eep (0.122564) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
