Ss1.1-Pig4-TMW8052I22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGATTTCTCTACTTACCATATGATCATTAACAGACTAGTTAATCTTATTTGGAATGA TAAGGCCAAAATAGTAAAACCACACTTTTCCTATAAAAAGTTACACATTATTTTCTGTAA GGATAGCTATCGTACATGAAGAAACCAAGAAGATGTGATCACTCTTTTGCACACCCAGGA ACGTTAGGGAATCTTGTCTTAGGATGATCTAGTCATCTTCTTCCTCTCCATCATCTTCAG CATCTCGTTTCCTCTTTTCCCCTCGAAGACCTTCTTCTTCCTCCTCTTCTTCTTCTTCTT CAACGTAGTCATCATCATCTTCTTCATCCTGAATTTCTTCTTTCATTAAGTAGGAGAGGC CCACTTCCTCTTCTCCCTCTCCCAGTTCTGAGCCTGCTTCATCTTCATCCTCATCATCAT CCTCGTCCTCCTCTTCTTCTTCCTCTTCCTCATATCCTTCAGGTGGACCAGCTTCATCTT CCTCTTCATCTTCATCATCTTCATCTCCATCCTCATCATCCTCTTCTTCTGAGTCTGGAG CTTCGTTATCCTCCTGGTCAAATCCATCTAAGTATGTGATTTGCTGCAGCAGCTCAAAGA TACTTTCTCTATAATCTTCCAGGTTTGTGATCTCACAGTTAAACAAGTCAAGACTTTTCA ACTTTTTAAGATTTTGCAGAGCTTCTACTGTACTGAGATCTTTGATTTTATTTCCACTCA AATTGAGGTAGGTAAGATTTGGACATTTCTCTGCCAGGACTTCCAAGCCTCCAGAAATTA TATTGTCACTAAGTTCCAACTTTCGAAGTTTATTTAAGCTGGGCAGCCGGGCCAGTGAAC TTAGTTCCACATTAGCCATACTCAGAAACTCCAGTTTTTTAAAAGTATCATTCAGGCCCT CAATTTCCCCATTGACACACAGGCAATTATCAAGGACCAACTCTGTCACCTCCTCCGGGG CTCTGTCCCTTAACTCCAGGTTAATCCTCTTCTTCATCTCCATGACCTACTCCTGCTTTT CTGCTATTACTCTCCTCCCTTACCCTTTCCTGCCTCTCACTACCCCCCAACCCTAAAATT TTAAAAGATTTCAAAATGAATGAAAATAAAAGCAAATTTAAACGCCCACCACCACCAGAT GGTGTGTGGGAGAAAAAAGAGAATAGCAAATGGAGTCCAAGGAGTTAGGACTCTTAACTC GGCTGCCCCCACCTCCTTGTCCACACACTCGCGCGCGCACTCACACGCGCACACACACAT ACACACACCCGCAGTTCCTTCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGATTTCTCTACTTACCATATGATCATTAACAGACTAGTTAATCTTATTTGGAATGA TAAGGCCAAAATAGTAAAACCACACTTTTCCTATAAAAAGTTACACATTATTTTCTGTAA GGATAGCTATCGTACATGAAGAAACCAAGAAGATGTGATCACTCTTTTGCACACCCAGGA ACGTTAGGGAATCTTGTCTTAGGATGATCTAGTCATCTTCTTCCTCTCCATCATCTTCAG CATCTCGTTTCCTCTTTTCCCCTCGAAGACCTTCTTCTTCCTCCTCTTCTTCTTCTTCTT CAACGTAGTCATCATCATCTTCTTCATCCTGAATTTCTTCTTTCATTAAGTAGGAGAGGC CCACTTCCTCTTCTCCCTCTCCCAGTTCTGAGCCTGCTTCATCTTCATCCTCATCATCAT CCTCGTCCTCCTCTTCTTCTTCCTCTTCCTCATATCCTTCAGGTGGACCAGCTTCATCTT CCTCTTCATCTTCATCATCTTCATCTCCATCCTCATCATCCTCTTCTTCTGAGTCTGGAG CTTCGTTATCCTCCTGGTCAAATCCATCTAAGTATGTGATTTGCTGCAGCAGCTCAAAGA TACTTTCTCTATAATCTTCCAGGTTTGTGATCTCACAGTTAAACAAGTCAAGACTTTTCA ACTTTTTAAGATTTTGCAGAGCTTCTACTGTACTGAGATCTTTGATTTTATTTCCACTCA AATTGAGGTAGGTAAGATTTGGACATTTCTCTGCCAGGACTTCCAAGCCTCCAGAAATTA TATTGTCACTAAGTTCCAACTTTCGAAGTTTATTTAAGCTGGGCAGCCGGGCCAGTGAAC TTAGTTCCACATTAGCCATACTCAGAAACTCCAGTTTTTTAAAAGTATCATTCAGGCCCT CAATTTCCCCATTGACACACAGGCAATTATCAAGGACCAACTCTGTCACCTCCTCCGGGG CTCTGTCCCTTAACTCCAGGTTAATCCTCTTCTTCATCTCCATGACCTACTCCTGCTTTT CTGCTATTACTCTCCTCCCTTACCCTTTCCTGCCTCTCACTACCCCCCAACCCTAAAATT TTAAAAGATTTCAAAATGAATGAAAATAAAAGCAAATTTAAACGCCCACCACCACCAGAT GGTGTGTGGGAGAAAAAAGAGAATAGCAAATGGAGTCCAAGGAGTTAGGACTCTTAACTC GGCTGCCCCCACCTCCTTGTCCACACACTCGCGCGCGCACTCACACGCGCACACACACAT ACACACACCCGCAGTTCCTTCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 550-669, + strand, RNAz p=0.569406 | |
| 1137-1284, - strand, RNAz p=0.916536 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 550-669, + strand, RNAz p=0.569406 | |
| 1137-1284, - strand, RNAz p=0.916536 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC003380, - |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 7-136, gnl|bosTau2|chr3 (17236479-17236349) | |
| 7-136, gnl|Hg17|chr1 (147005870-147005996) | |
| 7-136, gnl|Mm7|chr3 (95819395-95819269) | |
| 511-677, gnl|bosTau2|chr3 (17229585-17229419) | |
| 511-677, gnl|canFam2|chr17 (62552536-62552714) | |
| 511-677, gnl|danRer3|chr21 (38466458-38466631) | |
| 511-677, gnl|dasNov1|scaffold_28773 (37035-37200) | |
| 511-677, gnl|echTel1|scaffold_312059 (25362-25541) | |
| 511-677, gnl|fr1|chrUn (152547050-152546875) | |
| 511-677, gnl|galGal2|chrUn (130429999-130430171) | |
| 511-677, gnl|hg17|chr1 (147014479-147014655) | |
| 511-677, gnl|Hg17|chr1 (147014478-147014644) | |
| 511-677, gnl|loxAfr1|scaffold_50876 (7673-7505) | |
| 511-677, gnl|mm7|chr3 (95811138-95810964) | |
| 511-677, gnl|Mm7|chr3 (95811137-95810973) | |
| 511-677, gnl|monDom2|scaffold_44 (3425233-3425410) | |
| 511-677, gnl|oryCun1|scaffold_193971 (38795-38971) | |
| 511-677, gnl|panTro1|chr1 (128733305-128733481) | |
| 511-677, gnl|rheMac2|chr1 (128598137-128598313) | |
| 511-677, gnl|rn3|chr2 (190685124-190684945) | |
| 511-677, gnl|tetNig1|chrUn_random (46945336-46945515) | |
| 511-677, gnl|xenTro1|scaffold_335 (399956-399784) | |
| 696-914, gnl|bosTau2|chr11 (16228544-16228330) | |
| 696-914, gnl|Hg17|chr1 (147015998-147017302) | |
| 696-914, gnl|Mm7|chr3 (95808829-95807894) | |
| 946-1284, gnl|bosTau2|chr3 (17224981-17224646) | |
| 946-1284, gnl|Hg17|chr1 (147021150-147021512) | |
| 946-1284, gnl|Mm7|chr3 (95803604-95803262) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-136, gnl|bosTau2|chr3 (17236479-17236349) | |
| 7-136, gnl|Hg17|chr1 (147005870-147005996) | |
| 7-136, gnl|Mm7|chr3 (95819395-95819269) | |
| 511-677, gnl|bosTau2|chr3 (17229585-17229419) | |
| 511-677, gnl|canFam2|chr17 (62552536-62552714) | |
| 511-677, gnl|danRer3|chr21 (38466458-38466631) | |
| 511-677, gnl|dasNov1|scaffold_28773 (37035-37200) | |
| 511-677, gnl|echTel1|scaffold_312059 (25362-25541) | |
| 511-677, gnl|fr1|chrUn (152547050-152546875) | |
| 511-677, gnl|galGal2|chrUn (130429999-130430171) | |
| 511-677, gnl|hg17|chr1 (147014479-147014655) | |
| 511-677, gnl|Hg17|chr1 (147014478-147014644) | |
| 511-677, gnl|loxAfr1|scaffold_50876 (7673-7505) | |
| 511-677, gnl|mm7|chr3 (95811138-95810964) | |
| 511-677, gnl|Mm7|chr3 (95811137-95810973) | |
| 511-677, gnl|monDom2|scaffold_44 (3425233-3425410) | |
| 511-677, gnl|oryCun1|scaffold_193971 (38795-38971) | |
| 511-677, gnl|panTro1|chr1 (128733305-128733481) | |
| 511-677, gnl|rheMac2|chr1 (128598137-128598313) | |
| 511-677, gnl|rn3|chr2 (190685124-190684945) | |
| 511-677, gnl|tetNig1|chrUn_random (46945336-46945515) | |
| 511-677, gnl|xenTro1|scaffold_335 (399956-399784) | |
| 696-914, gnl|bosTau2|chr11 (16228544-16228330) | |
| 696-914, gnl|Hg17|chr1 (147015998-147017302) | |
| 696-914, gnl|Mm7|chr3 (95808829-95807894) | |
| 946-1284, gnl|bosTau2|chr3 (17224981-17224646) | |
| 946-1284, gnl|Hg17|chr1 (147021150-147021512) | |
| 946-1284, gnl|Mm7|chr3 (95803604-95803262) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| spl (0.286369) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| cut (0.169924) | |
| liv (0.146284) | |
| nca (0.136874) | |
| ova (0.129132) | |
| bla (0.124347) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| cut (0.169924) | |
| liv (0.146284) | |
| nca (0.136874) | |
| ova (0.129132) | |
| bla (0.124347) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |