Non-Coding RNA Search

Ss1.1-Pig4-TMW8052I24.3

Sequence:


               
               TCTGTAAGCGCTGCCAGCTTCTCCTCTCTTGGCCCTGCTCCCAGATCGCCGTCTCCTGGC
AGCCTCCCGTCTTCCTCCTCCCTCTCCTCCCTCCCCGCCTGCCCGCCTGCATGTGCAGCC
TTGGTTTTCGATCCATCGCCTCAAAAGTCGGAGGCAGCCCTGGATGGCGGTGGCAGTGGT
GGCTGTCAGATGCTGCCGCTGGCCGCCCCTGGCGCACTCTGTGCCCTCCGCCCGCGGACG
CGCCCGCTTGCCTTGCTGCCTGTGCAAATGTTGGACAAGGAGACGGACTCACACTAATCC
TCAGCTTAGCACAGGCTGGAGAGCAGATTTCTGGGATTTTTCCACTTGAGAATCTCCGTT
TCTGGGGTTTACCTGTTGTCTCTGGTGCGGCATCTTTGAGTGTCGCTTCTGCTTTTCAGT
TCCCTTTTCCCTGGTGTTCTGTTTCCTTTGAGTGGTAGAGACTTACAGGTGACCTGCTAT
CAGGGCAGCCAGAGGGTCAGGAAGGAACGCGGGGAGGTGGGCGGGGCGGGACCCGTCCGG
GTGGGCGTTCAGAGGAGCAGCAGGGAACTAGGGGGCACGAGGCTCCGGGCAGCGAGGCGT
TGCAGTGGCTTTTTAAGTGGGGCCCGGCTTCCGGGGGCGCACCTACTATGGCTGAGGCAG
GTGTCCAGAAACGGGCAGGCTCCACAGGAGGGCTCAGCCTTCCCCGCGTCTCACAGACCT
CGTGGTACCTTTGCCTTAGATTTTACACACTTTCTCCACAGCCAAGCACTGCCATGGGCA
GCCCCACGGCCACGGGTGCTCCAGGGCCTGGGAAAGGCGGGCGTGGTCCAGCAGTAGCCA
GCCATCATGGTGCTGCCCCCCGACCCCCGGCTTCTGGATGCAGCCTTTCAGGCGAGCTCT
GGGCAACGCCGCAAGGTGGGGAAGAAGCAGGAGTCCCTGGCACCTGCCTCTCTTGGGACT
GGGTTTGGCAGGGGACCCTCGTTGTTGACGCTCTACTGCAGAGTTGGAACCAGCAGGTTC
CACTCCCAACCTTGAGGCCCTCCTGGGAAGGAATGAGAAGCACCCCAAAGGGCAGTTTTT
CGCACCAGAGCAGAGGCTGCCAGCCTATGGCAGCTGGCCTGGGAGGGCACGCAGCTCCCT
GGCTCTCCTGTGTGGCAGAGACTAGATTCTCAGCCCTCACGAGTGGCGAGAACAGCTCCC
CTGGCCTGAGCTCAGGGCCGTCGTAGAGGACGGTGTGGGGCCTTAACGCTGTAGCACTTG
CTCAGTGAGAGGAAGGGCCCTTTCTCACCTTGTTTACGCCTGTTGCCCAATCGTGGGCAG
AACGGTACACATTTTGTGCGTATCAGAGGAAAGAGATGCCTTAGAGGAGGGAAAGACTGG
CCGCCCGGCTGCCTGTTAGCAGCTGAGCAAGGAGCCCTGCTCCGAGACAGGTGGAGAAGG
AATGCCACTTGCATCTAAAGATCCCCAGTGTCTGACTGTCCCTGGAGCCTGCTCGGCCCT
CGGGAGCTGGTGTGTGACATGGAAGGCTCTTGCTGCCAGAGCCACTGACTGGAACGAACA
TTGAATGGAGGCCCAGCCAGAGCTACTTTCAGCCCCAAATGGGTACCTCCCACCTCCCCA
AACAAGGGACGTTTGCTTCTCAGCATCAGGTTGCTACTGCAGCCCCCAGCCTTGCTGAGG
CAGTTATGAGAACCGGCTGGGAAACGCGAAAGGCCCAGAATAGTTACCAATTCCACCCCC
AGAGTGGGGAGGGTGAGACCAGACCTGGACTAAGCTGTACCAAGGAAAACAGCCCATGGG
TTCTCCTGGGAGACAGGGACTATGCAGCCCAGAACCCCCAGCCGCGGTCCCCAGCAGGGC
AGCTGTGCCAACAGGCGCCCAGCAGACAGGCTGCAGGAGTCCCGTACGCCTGTCCTGCCG
GCAGTGGCTGTGCGCTGCCGGTGTTTGCTGATACAGGTAGGAAGGGACCCTTCGTTAATA
TTTGACTTTAATAAGTTGGTAAGGATATATTTTTCTTTGGTCTATGTTCTGTTTCAACTT
ATGTAGATTATTATAAATTGATGTAAACCACGTGAAAGGAAAACGTTAATAAAAAAAAAA
AATGCAAAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTAAGCGCTGCCAGCTTCTCCTCTCTTGGCCCTGCTCCCAGATCGCCGTCTCCTGGC
AGCCTCCCGTCTTCCTCCTCCCTCTCCTCCCTCCCCGCCTGCCCGCCTGCATGTGCAGCC
TTGGTTTTCGATCCATCGCCTCAAAAGTCGGAGGCAGCCCTGGATGGCGGTGGCAGTGGT
GGCTGTCAGATGCTGCCGCTGGCCGCCCCTGGCGCACTCTGTGCCCTCCGCCCGCGGACG
CGCCCGCTTGCCTTGCTGCCTGTGCAAATGTTGGACAAGGAGACGGACTCACACTAATCC
TCAGCTTAGCACAGGCTGGAGAGCAGATTTCTGGGATTTTTCCACTTGAGAATCTCCGTT
TCTGGGGTTTACCTGTTGTCTCTGGTGCGGCATCTTTGAGTGTCGCTTCTGCTTTTCAGT
TCCCTTTTCCCTGGTGTTCTGTTTCCTTTGAGTGGTAGAGACTTACAGGTGACCTGCTAT
CAGGGCAGCCAGAGGGTCAGGAAGGAACGCGGGGAGGTGGGCGGGGCGGGACCCGTCCGG
GTGGGCGTTCAGAGGAGCAGCAGGGAACTAGGGGGCACGAGGCTCCGGGCAGCGAGGCGT
TGCAGTGGCTTTTTAAGTGGGGCCCGGCTTCCGGGGGCGCACCTACTATGGCTGAGGCAG
GTGTCCAGAAACGGGCAGGCTCCACAGGAGGGCTCAGCCTTCCCCGCGTCTCACAGACCT
CGTGGTACCTTTGCCTTAGATTTTACACACTTTCTCCACAGCCAAGCACTGCCATGGGCA
GCCCCACGGCCACGGGTGCTCCAGGGCCTGGGAAAGGCGGGCGTGGTCCAGCAGTAGCCA
GCCATCATGGTGCTGCCCCCCGACCCCCGGCTTCTGGATGCAGCCTTTCAGGCGAGCTCT
GGGCAACGCCGCAAGGTGGGGAAGAAGCAGGAGTCCCTGGCACCTGCCTCTCTTGGGACT
GGGTTTGGCAGGGGACCCTCGTTGTTGACGCTCTACTGCAGAGTTGGAACCAGCAGGTTC
CACTCCCAACCTTGAGGCCCTCCTGGGAAGGAATGAGAAGCACCCCAAAGGGCAGTTTTT
CGCACCAGAGCAGAGGCTGCCAGCCTATGGCAGCTGGCCTGGGAGGGCACGCAGCTCCCT
GGCTCTCCTGTGTGGCAGAGACTAGATTCTCAGCCCTCACGAGTGGCGAGAACAGCTCCC
CTGGCCTGAGCTCAGGGCCGTCGTAGAGGACGGTGTGGGGCCTTAACGCTGTAGCACTTG
CTCAGTGAGAGGAAGGGCCCTTTCTCACCTTGTTTACGCCTGTTGCCCAATCGTGGGCAG
AACGGTACACATTTTGTGCGTATCAGAGGAAAGAGATGCCTTAGAGGAGGGAAAGACTGG
CCGCCCGGCTGCCTGTTAGCAGCTGAGCAAGGAGCCCTGCTCCGAGACAGGTGGAGAAGG
AATGCCACTTGCATCTAAAGATCCCCAGTGTCTGACTGTCCCTGGAGCCTGCTCGGCCCT
CGGGAGCTGGTGTGTGACATGGAAGGCTCTTGCTGCCAGAGCCACTGACTGGAACGAACA
TTGAATGGAGGCCCAGCCAGAGCTACTTTCAGCCCCAAATGGGTACCTCCCACCTCCCCA
AACAAGGGACGTTTGCTTCTCAGCATCAGGTTGCTACTGCAGCCCCCAGCCTTGCTGAGG
CAGTTATGAGAACCGGCTGGGAAACGCGAAAGGCCCAGAATAGTTACCAATTCCACCCCC
AGAGTGGGGAGGGTGAGACCAGACCTGGACTAAGCTGTACCAAGGAAAACAGCCCATGGG
TTCTCCTGGGAGACAGGGACTATGCAGCCCAGAACCCCCAGCCGCGGTCCCCAGCAGGGC
AGCTGTGCCAACAGGCGCCCAGCAGACAGGCTGCAGGAGTCCCGTACGCCTGTCCTGCCG
GCAGTGGCTGTGCGCTGCCGGTGTTTGCTGATACAGGTAGGAAGGGACCCTTCGTTAATA
TTTGACTTTAATAAGTTGGTAAGGATATATTTTTCTTTGGTCTATGTTCTGTTTCAACTT
ATGTAGATTATTATAAATTGATGTAAACCACGTGAAAGGAAAACGTTAATAAAAAAAAAA
AATGCAAAGCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               690-807, - strand, RNAz p=0.597272

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               690-807, - strand, RNAz p=0.597272

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2102, gnl|bosTau2|chr19 (16301399-16303515)
               

               
               1-2102, gnl|Hg17|chr17 (855671-853539)
               

               
               1-2102, gnl|Mm7|chr11 (76500285-76498339)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2102, gnl|bosTau2|chr19 (16301399-16303515)
               

               
               1-2102, gnl|Hg17|chr17 (855671-853539)
               

               
               1-2102, gnl|Mm7|chr11 (76500285-76498339)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               fty (0.351679)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               fty (0.351679)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-2102, gnl\|bosTau2\|chr19 (16301399-16303515)
	1-2102, gnl\|Hg17\|chr17 (855671-853539)
	1-2102, gnl\|Mm7\|chr11 (76500285-76498339)

	cov (0.396458)
	fty (0.351679)
	fhi (0.339155)
	sme (0.305437)
	pty (0.285429)
	cst (0.280073)
	pgl (0.236967)
	ecc (0.23007)
	mas (0.210305)
	nlu (0.191681)
	duo (0.172801)
	nco (0.161734)
	hyp (0.142837)
	lnt (0.142308)
	sug (0.127291)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)