Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J01.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTGGAAGAATGAATGAATTTATTAGCTGAAACTGCAAG
ATGGGTAAGAGTCAGGCAAGAAGTATGTTCCAGGCGCAGGGAACAGCATATGCAAAAAAC
GAAATGTGGGAAGCATCCTCACAGCCAGTTGGCTATCATCTCCAGCTGAGCCTCCTCTGT
CTCAGTCTCATCCATCACTCCCCGTCTCTCTCCGTAGGCACCGGCGCCCCCTCGTGGCGG
CCACAGAAGAACCGCTCCCGGGCAGCGTCTGGTGGGGCGGCTCTGGCCAGCCCTAGCCCG
GGGTCCGGGTCAGGGCCCCCGGCTGGGTCCGGGGGCAAGGAGCGCTCGGAAAACCTGTCC
CTGCGGCGCAGCGTATCGGAGCTCAGTCTGCAGGGTCGGCGGAGGCGGCAGCAGGAGCGC
AGGCAGCAGGCCCTTAGCATGGCCCCAGGCGCAGCCGACGCCCAAATCGGACCAGTAGAC
CCCGGCGACTTTGACCAATTGACCCAGTGCCTCATCCAGGCCCCGAGCAACCGCCCCTAC
TTCCTGCTACTGCAAGGCTACCAAGACGCCCAGGTAGGCACATCCTCTTCTACCGGGAGA
GTCCTATGCCGCATCCTCAGGTTGAAGGGCGACAAAACTACAACTCCCAGAATTCCGTGG
GTCGTGTTAGTCTTCGGTATGCCGGAAAGTACGGTCCCAGCCAGGTCCCAGGGGAGGAGA
TACTCAGGTCTCAGAGCTCCGACAGCAGCTGCGCCTAGCCAGTGCGAGCTGCACCCGGAT
CTTGTGTCTCAGACATTTGGCTACTTGTTCTTCTTCTCCAATGCATCCCTTCTCAACTCG
CTGATGGAACGAGGTGAGGGTCGGAGTGGAAGGAGACCTCAGGTCTCAGAGCTCCGACAG
CAGCTGCGCCTGCGGGGCCTCCCGGTGTCTGGGACGAAGTCGATGCTCCTGGAGCGCATG
CGCGGCGGTGCCCCGCCCCGCGAGCGGCCAAAGCCGCGGCGCGAGGACAGTCCCCTGGAT
GCTCCCTGGCCACGCTTCAGGGCCAAAGCTTTGGGAGCCTCCCGGAGGCCCGGATCGGTG
AGGGCGGGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTGGAAGAATGAATGAATTTATTAGCTGAAACTGCAAG
ATGGGTAAGAGTCAGGCAAGAAGTATGTTCCAGGCGCAGGGAACAGCATATGCAAAAAAC
GAAATGTGGGAAGCATCCTCACAGCCAGTTGGCTATCATCTCCAGCTGAGCCTCCTCTGT
CTCAGTCTCATCCATCACTCCCCGTCTCTCTCCGTAGGCACCGGCGCCCCCTCGTGGCGG
CCACAGAAGAACCGCTCCCGGGCAGCGTCTGGTGGGGCGGCTCTGGCCAGCCCTAGCCCG
GGGTCCGGGTCAGGGCCCCCGGCTGGGTCCGGGGGCAAGGAGCGCTCGGAAAACCTGTCC
CTGCGGCGCAGCGTATCGGAGCTCAGTCTGCAGGGTCGGCGGAGGCGGCAGCAGGAGCGC
AGGCAGCAGGCCCTTAGCATGGCCCCAGGCGCAGCCGACGCCCAAATCGGACCAGTAGAC
CCCGGCGACTTTGACCAATTGACCCAGTGCCTCATCCAGGCCCCGAGCAACCGCCCCTAC
TTCCTGCTACTGCAAGGCTACCAAGACGCCCAGGTAGGCACATCCTCTTCTACCGGGAGA
GTCCTATGCCGCATCCTCAGGTTGAAGGGCGACAAAACTACAACTCCCAGAATTCCGTGG
GTCGTGTTAGTCTTCGGTATGCCGGAAAGTACGGTCCCAGCCAGGTCCCAGGGGAGGAGA
TACTCAGGTCTCAGAGCTCCGACAGCAGCTGCGCCTAGCCAGTGCGAGCTGCACCCGGAT
CTTGTGTCTCAGACATTTGGCTACTTGTTCTTCTTCTCCAATGCATCCCTTCTCAACTCG
CTGATGGAACGAGGTGAGGGTCGGAGTGGAAGGAGACCTCAGGTCTCAGAGCTCCGACAG
CAGCTGCGCCTGCGGGGCCTCCCGGTGTCTGGGACGAAGTCGATGCTCCTGGAGCGCATG
CGCGGCGGTGCCCCGCCCCGCGAGCGGCCAAAGCCGCGGCGCGAGGACAGTCCCCTGGAT
GCTCCCTGGCCACGCTTCAGGGCCAAAGCTTTGGGAGCCTCCCGGAGGCCCGGATCGGTG
AGGGCGGGGCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               972-1091, - strand, RNAz p=0.713075

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               972-1091, - strand, RNAz p=0.713075

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               24-691, gnl|bosTau2|chr18 (49922233-49921542)
               

               
               24-691, gnl|Hg17|chr19 (53930840-53930157)
               


               
               757-871, gnl|bosTau2|chr18 (49914328-49914214)
               

               
               757-871, gnl|Hg17|chr19 (53919882-53919769)
               

               
               757-871, gnl|Mm7|chr7 (41812579-41812693)
               


               
               876-1091, gnl|bosTau2|chr18 (49907156-49906941)
               

               
               876-1091, gnl|canFam2|chr1 (110488718-110488432)
               

               
               876-1091, gnl|dasNov1|scaffold_217460 (4387-4045)
               

               
               876-1091, gnl|echTel1|scaffold_321254 (68976-69323)
               

               
               876-1091, gnl|hg17|chr19 (53909224-53909555)
               

               
               876-1091, gnl|Hg17|chr19 (53909641-53909421)
               

               
               876-1091, gnl|loxAfr1|scaffold_60502 (7966-7623)
               

               
               876-1091, gnl|mm7|chr7 (41820027-41819667)
               

               
               876-1091, gnl|Mm7|chr7 (41819585-41819799)
               

               
               876-1091, gnl|monDom2|scaffold_1205 (1727-1441)
               

               
               876-1091, gnl|oryCun1|scaffold_156310 (99-428)
               

               
               876-1091, gnl|panTro1|chr20 (51291202-51291532)
               

               
               876-1091, gnl|rheMac2|chr19 (55019611-55019943)
               

               
               876-1091, gnl|rn3|chr1 (96191519-96191142)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-691, gnl|bosTau2|chr18 (49922233-49921542)
               

               
               24-691, gnl|Hg17|chr19 (53930840-53930157)
               


               
               757-871, gnl|bosTau2|chr18 (49914328-49914214)
               

               
               757-871, gnl|Hg17|chr19 (53919882-53919769)
               

               
               757-871, gnl|Mm7|chr7 (41812579-41812693)
               


               
               876-1091, gnl|bosTau2|chr18 (49907156-49906941)
               

               
               876-1091, gnl|canFam2|chr1 (110488718-110488432)
               

               
               876-1091, gnl|dasNov1|scaffold_217460 (4387-4045)
               

               
               876-1091, gnl|echTel1|scaffold_321254 (68976-69323)
               

               
               876-1091, gnl|hg17|chr19 (53909224-53909555)
               

               
               876-1091, gnl|Hg17|chr19 (53909641-53909421)
               

               
               876-1091, gnl|loxAfr1|scaffold_60502 (7966-7623)
               

               
               876-1091, gnl|mm7|chr7 (41820027-41819667)
               

               
               876-1091, gnl|Mm7|chr7 (41819585-41819799)
               

               
               876-1091, gnl|monDom2|scaffold_1205 (1727-1441)
               

               
               876-1091, gnl|oryCun1|scaffold_156310 (99-428)
               

               
               876-1091, gnl|panTro1|chr20 (51291202-51291532)
               

               
               876-1091, gnl|rheMac2|chr19 (55019611-55019943)
               

               
               876-1091, gnl|rn3|chr1 (96191519-96191142)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nca (0.273748)
               

               
               fty (0.17584)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               fty (0.17584)

	24-691, gnl\|bosTau2\|chr18 (49922233-49921542)
	24-691, gnl\|Hg17\|chr19 (53930840-53930157)

	757-871, gnl\|bosTau2\|chr18 (49914328-49914214)
	757-871, gnl\|Hg17\|chr19 (53919882-53919769)
	757-871, gnl\|Mm7\|chr7 (41812579-41812693)

	876-1091, gnl\|bosTau2\|chr18 (49907156-49906941)
	876-1091, gnl\|canFam2\|chr1 (110488718-110488432)
	876-1091, gnl\|dasNov1\|scaffold_217460 (4387-4045)
	876-1091, gnl\|echTel1\|scaffold_321254 (68976-69323)
	876-1091, gnl\|hg17\|chr19 (53909224-53909555)
	876-1091, gnl\|Hg17\|chr19 (53909641-53909421)
	876-1091, gnl\|loxAfr1\|scaffold_60502 (7966-7623)
	876-1091, gnl\|mm7\|chr7 (41820027-41819667)
	876-1091, gnl\|Mm7\|chr7 (41819585-41819799)
	876-1091, gnl\|monDom2\|scaffold_1205 (1727-1441)
	876-1091, gnl\|oryCun1\|scaffold_156310 (99-428)
	876-1091, gnl\|panTro1\|chr20 (51291202-51291532)
	876-1091, gnl\|rheMac2\|chr19 (55019611-55019943)
	876-1091, gnl\|rn3\|chr1 (96191519-96191142)