Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J03.3

Sequence:


               
               TTGACAACCCTGGCGGGGGTGCGCTTGCTGAGGCCCGTTTTGCTCCTTGACAACCCTGGC
GGGGGTGCGCTCGCTGAGGCCCTGGCTCTGGCCCCCGCGGGAGCAGCAACCCTTGGGGAA
AGACATTTTCTGCTCCCGCCAAGCTGGCAGGGCCTGCTTCCTGACTCTCCTGGGCGTGTC
TTAATTACCAGTCCCAGCGCCTCCTGAAAGGCCCACTCTCTCCCCCTGGTCACAGTGGAA
GGATCATGGGAGAGACGGAAGGGAAGAAAGATGAGGCTGATTATAAACGACTACAGACCT
TCCCTCTGGTCAGGCACTCGGACATGCCGGAGGAGATGCGAGTGGAGACCATGGAGCTGT
GTGTCACGGCCTGTGAGAAATTCTCCAACAACAACGAGAGCGCCGCCAAGATGATCAAGG
AGACCATGGACAAGAAGTTCGGCTCCTCCTGGCACGTGGTGATCGGCGAAGGCTTCGGCT
TTGAGATCACGCACGAGGTGAAGAACCTCCTCTACCTGTACTTCGGGGGGACCCTGGCCG
TGTGCGTCTGGAAGTGCTCCTGACACCGTCCCCCCCTCCTGCCCCTCCTCGGGGATGGGG
AGCAGCCCCGGGCAGGTCCTGGCTTCCCAGAGGAAGGCCGGGGCCTCTTCTCTCGTCCGT
CCCGTGTCCCCATCCCTGAGCCCCGCCCCGTGTGCGAATTTGGCCACATCTCTGTCCCCA
GGCTCGCAGCCGTCTCCCGCCGAGTCCCGGGGTGTGAGGGGCAGCAGGGGAGGGGCGGGA
CGTGGAACTGCCCTCTCGGGGATGTGCCAGCCCCACCTCGCTTGGCGGCGCCCCGCCCCT
GCATCCCGGAGCCCCCGCCTTCCCCCCAGCACTGCTACCGGGGGCCTCGAGAGGAAGCCT
CTCCTCTCCGGCATCTCTCTGGTCCCCCGGAGAAGCGGTGACCCCCAGAAGCCCCTTGCC
CACCCCGACCCAGGCTGAACAAACCACTGCATCTCGTCGGGCCGACAGCCCCTGGCTCTG
GCTCTGGCTCGAGGACCCAGCCGCCTGTGCCCCTCCGTCCCCCGTCCCTCCCCAGCCGCC
AGGCCGCGTGAACCTTTCACTTTGCCTCCACCCGTGCAGTCGGTAACCAGGGGCTGAGGG
TGTGGGAGCTGCGACCGAGCAGTTTCTCCAAGAGTCACTGACCCCCGGTGAGACGCCTGG
GCCAGGAGCGCACTCGCCGCGAGGCCGTTTCGCAGGGAAACCTGGCCTGCCGCTTACGTA
GCATCAGGGACCGCATGCTGATTTGTACTTCTTATCTCTGCTGGGTTTTCTATTCTCTTT
CTGAGTGTGGGGAGAAGGGTTTTAGTAGAAGGGCGAATCCTATTTTACACAGCGGTCTTA
TTTATATAAATGTCTTGGTTTTTACAATTAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACAACCCTGGCGGGGGTGCGCTTGCTGAGGCCCGTTTTGCTCCTTGACAACCCTGGC
GGGGGTGCGCTCGCTGAGGCCCTGGCTCTGGCCCCCGCGGGAGCAGCAACCCTTGGGGAA
AGACATTTTCTGCTCCCGCCAAGCTGGCAGGGCCTGCTTCCTGACTCTCCTGGGCGTGTC
TTAATTACCAGTCCCAGCGCCTCCTGAAAGGCCCACTCTCTCCCCCTGGTCACAGTGGAA
GGATCATGGGAGAGACGGAAGGGAAGAAAGATGAGGCTGATTATAAACGACTACAGACCT
TCCCTCTGGTCAGGCACTCGGACATGCCGGAGGAGATGCGAGTGGAGACCATGGAGCTGT
GTGTCACGGCCTGTGAGAAATTCTCCAACAACAACGAGAGCGCCGCCAAGATGATCAAGG
AGACCATGGACAAGAAGTTCGGCTCCTCCTGGCACGTGGTGATCGGCGAAGGCTTCGGCT
TTGAGATCACGCACGAGGTGAAGAACCTCCTCTACCTGTACTTCGGGGGGACCCTGGCCG
TGTGCGTCTGGAAGTGCTCCTGACACCGTCCCCCCCTCCTGCCCCTCCTCGGGGATGGGG
AGCAGCCCCGGGCAGGTCCTGGCTTCCCAGAGGAAGGCCGGGGCCTCTTCTCTCGTCCGT
CCCGTGTCCCCATCCCTGAGCCCCGCCCCGTGTGCGAATTTGGCCACATCTCTGTCCCCA
GGCTCGCAGCCGTCTCCCGCCGAGTCCCGGGGTGTGAGGGGCAGCAGGGGAGGGGCGGGA
CGTGGAACTGCCCTCTCGGGGATGTGCCAGCCCCACCTCGCTTGGCGGCGCCCCGCCCCT
GCATCCCGGAGCCCCCGCCTTCCCCCCAGCACTGCTACCGGGGGCCTCGAGAGGAAGCCT
CTCCTCTCCGGCATCTCTCTGGTCCCCCGGAGAAGCGGTGACCCCCAGAAGCCCCTTGCC
CACCCCGACCCAGGCTGAACAAACCACTGCATCTCGTCGGGCCGACAGCCCCTGGCTCTG
GCTCTGGCTCGAGGACCCAGCCGCCTGTGCCCCTCCGTCCCCCGTCCCTCCCCAGCCGCC
AGGCCGCGTGAACCTTTCACTTTGCCTCCACCCGTGCAGTCGGTAACCAGGGGCTGAGGG
TGTGGGAGCTGCGACCGAGCAGTTTCTCCAAGAGTCACTGACCCCCGGTGAGACGCCTGG
GCCAGGAGCGCACTCGCCGCGAGGCCGTTTCGCAGGGAAACCTGGCCTGCCGCTTACGTA
GCATCAGGGACCGCATGCTGATTTGTACTTCTTATCTCTGCTGGGTTTTCTATTCTCTTT
CTGAGTGTGGGGAGAAGGGTTTTAGTAGAAGGGCGAATCCTATTTTACACAGCGGTCTTA
TTTATATAAATGTCTTGGTTTTTACAATTAAAATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32880037|gb|AAP88849.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32880037|gb|AAP88849.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1260-1379, + strand, RNAz p=0.742644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1260-1379, + strand, RNAz p=0.742644

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005740, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005740, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               104-314, gnl|bosTau2|chr5 (69262428-69262638)
               

               
               104-314, gnl|Hg17|chr22 (37503378-37503168)
               

               
               104-314, gnl|Mm7|chr15 (79849156-79848948)
               


               
               915-1416, gnl|bosTau2|chr5 (69265885-69266378)
               

               
               915-1416, gnl|Hg17|chr22 (37499480-37499024)
               

               
               915-1416, gnl|Mm7|chr15 (79846073-79845597)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-314, gnl|bosTau2|chr5 (69262428-69262638)
               

               
               104-314, gnl|Hg17|chr22 (37503378-37503168)
               

               
               104-314, gnl|Mm7|chr15 (79849156-79848948)
               


               
               915-1416, gnl|bosTau2|chr5 (69265885-69266378)
               

               
               915-1416, gnl|Hg17|chr22 (37499480-37499024)
               

               
               915-1416, gnl|Mm7|chr15 (79846073-79845597)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	104-314, gnl\|bosTau2\|chr5 (69262428-69262638)
	104-314, gnl\|Hg17\|chr22 (37503378-37503168)
	104-314, gnl\|Mm7\|chr15 (79849156-79848948)

	915-1416, gnl\|bosTau2\|chr5 (69265885-69266378)
	915-1416, gnl\|Hg17\|chr22 (37499480-37499024)
	915-1416, gnl\|Mm7\|chr15 (79846073-79845597)

	nlu (0.191681)
	nep (0.183925)
	cov (0.132153)
	eru (0.120048)
	pgl (0.118483)
	eje (0.0988338)