Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J05.5

Sequence:


               
               TCTTAACCAAGGTGAATTTAGCTGTGTCAACTAATAGCTTTTCTATAGTATGTAACAAAT
CTGAGTTTTCCTATGCTGTGAATTATTAAATACAATATGATATATTATAGTGTAAAGAAT
GTTAGTCATACTCTTGGGCTTCATAAGTAAGTTCATTTGTGCTTTGTTTTCTTACTCTAA
CTGATCAGCTGGTATTAGTTTAGGATTCCTTATCATTCCATCAACTCATTATAATTAGCT
CATTAACTTAAAAATTAGATTAATCTCAAAATAAGAATAGCAGTACTATGAGGAATTCAT
AAAATGCAATTTCATGTTAGAACTAGACTAAAGGTAATTGCATGGTTATTTGCAATTTTT
CATTATAACACTTACATGTTTACGATTTCTAAGGTTTTACCTTTGGTACAGTCCTTAGGA
ATTTAGAAGTTTCCAGGGATTCACTACATTACAGTGTTCGCCTAATTGATACTGGTCTTC
ACTGTGGATTTTAATGAACTTTAGTGTTTACTTTCTAAAACATAGATTGCACTTGGAATG
TTACTTTGGTTCTTCATGAACGCATTTTGTGAAAAAAAAATGATACTTTCACAGTTGGAG
CAACTTGTTTGTGACGTGTTAAGCAATATTTAAAAAAATATAATTTTACACATGTAAAGT
GTAGTCATAATAAGCCAAATTGTATTTAAGACTAAATTTACTGTCCATTTTGAATAAGAC
ATTCCCACATTACTTTTATATCGTCAGATTAACTCTTCTGTTTGATAGCACTTTCCCCTG
TGGACATGAGCTGGAAAAATGATATATTTTTATAGGATTGTTTGTCCAGAATGACTTCAG
ATATGCATGATATAGTGGAAAGAGCACTGACTAGTAATTTCTACGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAACCAAGGTGAATTTAGCTGTGTCAACTAATAGCTTTTCTATAGTATGTAACAAAT
CTGAGTTTTCCTATGCTGTGAATTATTAAATACAATATGATATATTATAGTGTAAAGAAT
GTTAGTCATACTCTTGGGCTTCATAAGTAAGTTCATTTGTGCTTTGTTTTCTTACTCTAA
CTGATCAGCTGGTATTAGTTTAGGATTCCTTATCATTCCATCAACTCATTATAATTAGCT
CATTAACTTAAAAATTAGATTAATCTCAAAATAAGAATAGCAGTACTATGAGGAATTCAT
AAAATGCAATTTCATGTTAGAACTAGACTAAAGGTAATTGCATGGTTATTTGCAATTTTT
CATTATAACACTTACATGTTTACGATTTCTAAGGTTTTACCTTTGGTACAGTCCTTAGGA
ATTTAGAAGTTTCCAGGGATTCACTACATTACAGTGTTCGCCTAATTGATACTGGTCTTC
ACTGTGGATTTTAATGAACTTTAGTGTTTACTTTCTAAAACATAGATTGCACTTGGAATG
TTACTTTGGTTCTTCATGAACGCATTTTGTGAAAAAAAAATGATACTTTCACAGTTGGAG
CAACTTGTTTGTGACGTGTTAAGCAATATTTAAAAAAATATAATTTTACACATGTAAAGT
GTAGTCATAATAAGCCAAATTGTATTTAAGACTAAATTTACTGTCCATTTTGAATAAGAC
ATTCCCACATTACTTTTATATCGTCAGATTAACTCTTCTGTTTGATAGCACTTTCCCCTG
TGGACATGAGCTGGAAAAATGATATATTTTTATAGGATTGTTTGTCCAGAATGACTTCAG
ATATGCATGATATAGTGGAAAGAGCACTGACTAGTAATTTCTACGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-888, gnl|bosTau2|chr1 (44325027-44324139)
               

               
               3-888, gnl|Hg17|chr3 (196478792-196477924)
               

               
               3-888, gnl|Mm7|chr16 (30768329-30767560)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-888, gnl|bosTau2|chr1 (44325027-44324139)
               

               
               3-888, gnl|Hg17|chr3 (196478792-196477924)
               

               
               3-888, gnl|Mm7|chr16 (30768329-30767560)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               jej (0.0989218)

	3-888, gnl\|bosTau2\|chr1 (44325027-44324139)
	3-888, gnl\|Hg17\|chr3 (196478792-196477924)
	3-888, gnl\|Mm7\|chr16 (30768329-30767560)