Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J10.3

Sequence:


               
               TGAAACTTATGGATCGTCACAAAAAGGAACGTGCAGGGGAGAAGGCTTTTAAATGCCAGG
AATGTGGGAAAAGCTTCAGAGTTAGCTCTGACCTTATTAAACACCAAAGAATTCACACCG
AAGAAAAACCGTATAAATGTCAGCAGTGTGATAAGAGGTTTAGATGGAGTTCAGATCTTA
ATAAGCACCTAACAACACACCAAGGAATAAAACCATATAAGTGCTCATGGTGTGGGAAAT
GCTTCAGTCAAAATACCAATCTTCACACACACCAGAGAACTCACACTGGAGAGAAGCCCT
TTACATGTCACGAATGTGGGAAGAAATTCAGTCAAAATTCGCATCTTATTAAACACCGGA
GAACCCACACGGGTGAGCAGCCTTATAGCTGTAGCACGTGCAGGAGAAATTTCAGCAGGC
GCTCAAGCCTTCTTAGACACCAGAAACTCCACCAGTAAAGGAGAGCTTTTTCAGGATCCT
CAGTCTGAAGAAATTCACCAAGTGGAGCTTGACCCTAAAGTTACGAAAAATACAAAATTA
TAAAGTGTGAAGAATTTTTCAACATTGTAGTTTTTCATCAGGAAACTTTGGTGATACAAA
CAAGTTTCACAGAAGGGATCCAGGTTGACACTGCAAGAGATGCGTTAGTAGTTGCACTAC
TTGGTGATTTTACTGAAAACTTTCAGCGAATTCTGTAGCAAGAGAAGTGTTCTAAGAACA
TTCTGAGTAAACAAAAAGGCTGTTTAGGAATTATATTTGACCGAGTCACAAATTCAGCTT
CCAGAGGTAGATGTGGCCATGAATTGGTCTTCTCTGGTCACAGAGGTTAAAGATTGTTGG
TTTGCATTGGTCTCCCCAGCCTCGCTCAAACATGTATGATAGAAACATTTGTATCATGGT
CTTCACAAACAAAAAGCAATAATGTACATGCGTAATTGCATAGTATTGTCTTCCAAGTTA
AATAATTTCAGTAATCTCTCGACACAGAAATGAATTCTAGTGAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACTTATGGATCGTCACAAAAAGGAACGTGCAGGGGAGAAGGCTTTTAAATGCCAGG
AATGTGGGAAAAGCTTCAGAGTTAGCTCTGACCTTATTAAACACCAAAGAATTCACACCG
AAGAAAAACCGTATAAATGTCAGCAGTGTGATAAGAGGTTTAGATGGAGTTCAGATCTTA
ATAAGCACCTAACAACACACCAAGGAATAAAACCATATAAGTGCTCATGGTGTGGGAAAT
GCTTCAGTCAAAATACCAATCTTCACACACACCAGAGAACTCACACTGGAGAGAAGCCCT
TTACATGTCACGAATGTGGGAAGAAATTCAGTCAAAATTCGCATCTTATTAAACACCGGA
GAACCCACACGGGTGAGCAGCCTTATAGCTGTAGCACGTGCAGGAGAAATTTCAGCAGGC
GCTCAAGCCTTCTTAGACACCAGAAACTCCACCAGTAAAGGAGAGCTTTTTCAGGATCCT
CAGTCTGAAGAAATTCACCAAGTGGAGCTTGACCCTAAAGTTACGAAAAATACAAAATTA
TAAAGTGTGAAGAATTTTTCAACATTGTAGTTTTTCATCAGGAAACTTTGGTGATACAAA
CAAGTTTCACAGAAGGGATCCAGGTTGACACTGCAAGAGATGCGTTAGTAGTTGCACTAC
TTGGTGATTTTACTGAAAACTTTCAGCGAATTCTGTAGCAAGAGAAGTGTTCTAAGAACA
TTCTGAGTAAACAAAAAGGCTGTTTAGGAATTATATTTGACCGAGTCACAAATTCAGCTT
CCAGAGGTAGATGTGGCCATGAATTGGTCTTCTCTGGTCACAGAGGTTAAAGATTGTTGG
TTTGCATTGGTCTCCCCAGCCTCGCTCAAACATGTATGATAGAAACATTTGTATCATGGT
CTTCACAAACAAAAAGCAATAATGTACATGCGTAATTGCATAGTATTGTCTTCCAAGTTA
AATAATTTCAGTAATCTCTCGACACAGAAATGAATTCTAGTGAAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q92669_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q92669_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-1007, gnl|bosTau2|chr25 (346410-347400)
               

               
               1-1007, gnl|Hg17|chr16 (3307413-3308247)
               

               
               1-1007, gnl|Mm7|chr16 (3447970-3448807)
               


               
               4-470, gnl|bosTau2|chr22 (14430033-14430498)
               

               
               4-470, gnl|Hg17|chr19 (2803954-2804419)
               

               
               4-470, gnl|Mm7|chr8 (68162721-68162256)
               


               
               17-460, gnl|bosTau2|chr18 (50083599-50084043)
               

               
               17-460, gnl|Hg17|chrX (47359335-47359741)
               

               
               17-460, gnl|Mm7|chr7 (39766175-39766619)
               


               
               18-452, gnl|bosTau2|chr14 (3080781-3080347)
               

               
               18-452, gnl|Hg17|chr8 (146128046-146127612)
               


               
               34-449, gnl|bosTau2|chr10 (8996683-8996267)
               

               
               34-449, gnl|Hg17|chr19 (42818488-42817988)
               

               
               34-449, gnl|Mm7|chr2 (127310114-127309698)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1007, gnl|bosTau2|chr25 (346410-347400)
               

               
               1-1007, gnl|Hg17|chr16 (3307413-3308247)
               

               
               1-1007, gnl|Mm7|chr16 (3447970-3448807)
               


               
               4-470, gnl|bosTau2|chr22 (14430033-14430498)
               

               
               4-470, gnl|Hg17|chr19 (2803954-2804419)
               

               
               4-470, gnl|Mm7|chr8 (68162721-68162256)
               


               
               17-460, gnl|bosTau2|chr18 (50083599-50084043)
               

               
               17-460, gnl|Hg17|chrX (47359335-47359741)
               

               
               17-460, gnl|Mm7|chr7 (39766175-39766619)
               


               
               18-452, gnl|bosTau2|chr14 (3080781-3080347)
               

               
               18-452, gnl|Hg17|chr8 (146128046-146127612)
               


               
               34-449, gnl|bosTau2|chr10 (8996683-8996267)
               

               
               34-449, gnl|Hg17|chr19 (42818488-42817988)
               

               
               34-449, gnl|Mm7|chr2 (127310114-127309698)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.292569)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               lun (0.150489)

	1-1007, gnl\|bosTau2\|chr25 (346410-347400)
	1-1007, gnl\|Hg17\|chr16 (3307413-3308247)
	1-1007, gnl\|Mm7\|chr16 (3447970-3448807)

	4-470, gnl\|bosTau2\|chr22 (14430033-14430498)
	4-470, gnl\|Hg17\|chr19 (2803954-2804419)
	4-470, gnl\|Mm7\|chr8 (68162721-68162256)

	17-460, gnl\|bosTau2\|chr18 (50083599-50084043)
	17-460, gnl\|Hg17\|chrX (47359335-47359741)
	17-460, gnl\|Mm7\|chr7 (39766175-39766619)

	18-452, gnl\|bosTau2\|chr14 (3080781-3080347)
	18-452, gnl\|Hg17\|chr8 (146128046-146127612)

	34-449, gnl\|bosTau2\|chr10 (8996683-8996267)
	34-449, gnl\|Hg17\|chr19 (42818488-42817988)
	34-449, gnl\|Mm7\|chr2 (127310114-127309698)