Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J11.5.5

Sequence:


               
               ATATGGTATAAGTTAATAACGCTTTCCCCCAAAATGGTGCTTTGAAAAGGGTGTGATGGG
GAAAATATTATCCCAGATTCCTCTCTCGATAAACCTAGAAAGATGGGCTGTAGATTATGG
CTGAGAAGGAAGGCATCCAGGAGGAAGGGACAGCCAGCAGGACAGGGAGATGGGTACCCC
AACTAGCCATCAAGGATCAGGGGCCTCCTCGGTTAGATTGGTATTTCGTGAAGGGCAACC
AGCAGAGTGGTACCCAAGACACTGGGCTGCGAGGATACTCTGATTTGGGGTTTGCATTTT
TATGGTTCTCTCACCTCCTATTGCCCCTGGAGTTTCCCATGGTTCTCTCACCTCCTATTG
CCCCTGCAGTTTCCCATTTGTGATTTTTTTGTGCAAGGATCTGATTTAAGACTTCTTTCC
CTCCCCTAGAAAAGTTTCATGCATTATATTAGACGGGAGATAGAACTCTAAGTGGAAAAC
AACAGCTGTTTCTAGCCCTGGGTGACAATCTTAGGACTAGGTCCTTCCCAGAGGTGTCCT
CTGCCCTCTGAAGTGACTCCTTCATTTGTAAAAGTGGCAGAGAGACCATCGAGAAACCAG
CACCTGTGAGTTCTTTAGAGGTTGGGTTTCTTCTTCTCTTTGAGCTTCAGAGGGGAGAGT
TTGCACAGTTCAGTCTGAGTGATTACCTCCCTGCTGAAAACCAGAGGTGTGTGGCAAGCT
CACATGTGCCCCGAAACCTCTAAACACGTCACTTCCTTTCTTCCCTGCTTGCCCGGCCTG
GTGATTGAAGCAGCCCGCGATGTCATCACAGAGTGCACACTTCCTCGCTCTTCTTATCTG
GGGACCACCCCACTGCAGTGGTGGAGGTGGGGCACTTTTAAATGCCCGCTCTTCTCAAGC
CATTCCAGCCTCTTCCTCAGAATAGACCAGACACCCTTGCATTCGGCTCAGTGCCATCCT
TTACGTCCCCAGCCCTGCTGTTAGACCCGTTGTCCCCTTTCCTCCTAATGAGGAGAGGTG
GAGGGAGAAGAGCTCCCCATGACTGAATTGGCCTTTGGCTCATGTTTTCTCCCCATAATG
TATATATGCCATATGTGAATATGCCATATATATGTGCCAACAAATCTATCTACGTTGTTC
TTTTCAAATCAGCACGCAGATAGGATTTCGAGTTTCTTCTTCTTCTTTTTTTTTTTTCAG
TAACTAAGTATAGCAAGCACTGGTATTTTTGTATAAAAGAAAAAAAAACAAACAAAAGAT
TGACTATTGTGATCTGCATGACATAAACTAACAAATGGTGACATCCAAGCAATGTGTACC
CCAGTGTGTGTTGCCATAATTTGCAGGTGAGCTAAACAGTGCACCCAGTCTGTATTTGCA
TTTTGATATTATTTAAGCTCTCTGTACAATGTTCTGCATGTATTTATATGGTTCTTAGGG
AAAAAAATGCTATAAACTGGCAAATCTGAAATTCAGATATGTTGTTCCACTGAGACAGGA
AGAATAGAAGGAGAGTTTTAAAAGAAGGGAAAAAAGGGATACTTTTTTTTGGAACCAATA
AAGCCGTCGCTGATGAGCAGAAACCGATACTATTGTGCACTGAGAATAAAAACCCATACC
CACTTGTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGGTATAAGTTAATAACGCTTTCCCCCAAAATGGTGCTTTGAAAAGGGTGTGATGGG
GAAAATATTATCCCAGATTCCTCTCTCGATAAACCTAGAAAGATGGGCTGTAGATTATGG
CTGAGAAGGAAGGCATCCAGGAGGAAGGGACAGCCAGCAGGACAGGGAGATGGGTACCCC
AACTAGCCATCAAGGATCAGGGGCCTCCTCGGTTAGATTGGTATTTCGTGAAGGGCAACC
AGCAGAGTGGTACCCAAGACACTGGGCTGCGAGGATACTCTGATTTGGGGTTTGCATTTT
TATGGTTCTCTCACCTCCTATTGCCCCTGGAGTTTCCCATGGTTCTCTCACCTCCTATTG
CCCCTGCAGTTTCCCATTTGTGATTTTTTTGTGCAAGGATCTGATTTAAGACTTCTTTCC
CTCCCCTAGAAAAGTTTCATGCATTATATTAGACGGGAGATAGAACTCTAAGTGGAAAAC
AACAGCTGTTTCTAGCCCTGGGTGACAATCTTAGGACTAGGTCCTTCCCAGAGGTGTCCT
CTGCCCTCTGAAGTGACTCCTTCATTTGTAAAAGTGGCAGAGAGACCATCGAGAAACCAG
CACCTGTGAGTTCTTTAGAGGTTGGGTTTCTTCTTCTCTTTGAGCTTCAGAGGGGAGAGT
TTGCACAGTTCAGTCTGAGTGATTACCTCCCTGCTGAAAACCAGAGGTGTGTGGCAAGCT
CACATGTGCCCCGAAACCTCTAAACACGTCACTTCCTTTCTTCCCTGCTTGCCCGGCCTG
GTGATTGAAGCAGCCCGCGATGTCATCACAGAGTGCACACTTCCTCGCTCTTCTTATCTG
GGGACCACCCCACTGCAGTGGTGGAGGTGGGGCACTTTTAAATGCCCGCTCTTCTCAAGC
CATTCCAGCCTCTTCCTCAGAATAGACCAGACACCCTTGCATTCGGCTCAGTGCCATCCT
TTACGTCCCCAGCCCTGCTGTTAGACCCGTTGTCCCCTTTCCTCCTAATGAGGAGAGGTG
GAGGGAGAAGAGCTCCCCATGACTGAATTGGCCTTTGGCTCATGTTTTCTCCCCATAATG
TATATATGCCATATGTGAATATGCCATATATATGTGCCAACAAATCTATCTACGTTGTTC
TTTTCAAATCAGCACGCAGATAGGATTTCGAGTTTCTTCTTCTTCTTTTTTTTTTTTCAG
TAACTAAGTATAGCAAGCACTGGTATTTTTGTATAAAAGAAAAAAAAACAAACAAAAGAT
TGACTATTGTGATCTGCATGACATAAACTAACAAATGGTGACATCCAAGCAATGTGTACC
CCAGTGTGTGTTGCCATAATTTGCAGGTGAGCTAAACAGTGCACCCAGTCTGTATTTGCA
TTTTGATATTATTTAAGCTCTCTGTACAATGTTCTGCATGTATTTATATGGTTCTTAGGG
AAAAAAATGCTATAAACTGGCAAATCTGAAATTCAGATATGTTGTTCCACTGAGACAGGA
AGAATAGAAGGAGAGTTTTAAAAGAAGGGAAAAAAGGGATACTTTTTTTTGGAACCAATA
AAGCCGTCGCTGATGAGCAGAAACCGATACTATTGTGCACTGAGAATAAAAACCCATACC
CACTTGTAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1064-1182, - strand, RNAz p=0.948797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1064-1182, - strand, RNAz p=0.948797

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-340, gnl|bosTau2|chr16 (163967-164336)
               

               
               1-340, gnl|Hg17|chr1 (200443239-200443632)
               

               
               1-340, gnl|Mm7|chr1 (133594019-133593646)
               


               
               342-1627, gnl|bosTau2|chr16 (164301-165568)
               

               
               342-1627, gnl|Hg17|chr1 (200443599-200444864)
               

               
               342-1627, gnl|Mm7|chr1 (133593682-133592465)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-340, gnl|bosTau2|chr16 (163967-164336)
               

               
               1-340, gnl|Hg17|chr1 (200443239-200443632)
               

               
               1-340, gnl|Mm7|chr1 (133594019-133593646)
               


               
               342-1627, gnl|bosTau2|chr16 (164301-165568)
               

               
               342-1627, gnl|Hg17|chr1 (200443599-200444864)
               

               
               342-1627, gnl|Mm7|chr1 (133593682-133592465)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               cut (0.509771)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               clu (0.358938)
               

               
               bfe (0.299715)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               clu (0.358938)
               

               
               bfe (0.299715)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-340, gnl\|bosTau2\|chr16 (163967-164336)
	1-340, gnl\|Hg17\|chr1 (200443239-200443632)
	1-340, gnl\|Mm7\|chr1 (133594019-133593646)

	342-1627, gnl\|bosTau2\|chr16 (164301-165568)
	342-1627, gnl\|Hg17\|chr1 (200443599-200444864)
	342-1627, gnl\|Mm7\|chr1 (133593682-133592465)

	cut (0.509771)
	ret (0.3862)
	tra (0.369276)
	clu (0.358938)
	bfe (0.299715)
	che (0.272628)
	ute (0.265569)
	ova (0.258264)
	ese (0.253004)
	bla (0.248694)
	ebs (0.236602)
	spc (0.226732)
	fcc (0.197785)
	eje (0.197668)
	aor (0.195274)
	gul (0.177588)
	fhi (0.169578)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)