Ss1.1-Pig4-TMW8052J14.3
|
CCGGTGCTCAGCATGGCGGCCGCCTGGCCCTCCAGGCCGGCTGCTCCCGACACAGTGGCC
GCCCGGTTCCTCGGTGTCCTGTGGTTCATATCAGCCACCACTGGACCTTGGGGAGCTGCC
GCCGGCGGCAGCGAGGAGCCACTTAAGTGCGAGGACCTCAAAGTGGGACAATATATTTGT
AAAGATCCAAAAATAAATGAGGCTACACAAGAACCAGTTAACTGTACAAACTACACAGCT
TATGTTGAATGTTTTCCAGCACCCAACATAACTTGTAAGGATTATGGTGGCAATGAAACA
CATTTTACGGGAAATGAAGTTGGTTTTCTCAAGCCCATACCTTGCCGGAATGTAAATGGC
TATTCATACAAAGTGGCAGTTGCACTGTCTCTTTTTCTTGGATGGTTGGGAGCAGATCGA
TTTTACCTTGGATACCCTGCCTTGGGTTTGTTAAAGTTTTGCACTGTAGGGTTTTGTGGA
ATTGGGAGCCTAATTGATTTCATTCTTATTTCAATGCAGATTGTTGGACCTTCAGATGGA
AGTAGTTACATTATAGATTATTATGGAACCAGACTTACAAGACTAAGTATTACCAATGAG
ACATTTAGAAAAACGCAGTTATATCCATGAATATTTTTAAAAGAAACAGATTTGAGCCTT
CTTGATTTTGATAGAGAACTCTCAATATGTAAATTCCCAGGTTTTCTTTTTCCTTCTTCA
CATACCACTTTATGGATTCTTTTTAATTTTTTGTTGCTGATGTTTTTGTTTTGTTGTTTT
AGTTAAAAGCATATCAATCTGAGATTTATTTACTAGGATTTTCTTTGAGAGCTGCATGAT
AATAGAGTCTTTTCAGGCTACTGTCTCTGAGATAGATGACTTCCTACGCTGATATTCTTT
AATGCTTTTCCCAAAGGCAAGTTGCCTCTTGTCATCTTCACTTCTGAAAAATAAAATTAT
ACTTACTCCAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGGTGCTCAGCATGGCGGCCGCCTGGCCCTCCAGGCCGGCTGCTCCCGACACAGTGGCC
GCCCGGTTCCTCGGTGTCCTGTGGTTCATATCAGCCACCACTGGACCTTGGGGAGCTGCC
GCCGGCGGCAGCGAGGAGCCACTTAAGTGCGAGGACCTCAAAGTGGGACAATATATTTGT
AAAGATCCAAAAATAAATGAGGCTACACAAGAACCAGTTAACTGTACAAACTACACAGCT
TATGTTGAATGTTTTCCAGCACCCAACATAACTTGTAAGGATTATGGTGGCAATGAAACA
CATTTTACGGGAAATGAAGTTGGTTTTCTCAAGCCCATACCTTGCCGGAATGTAAATGGC
TATTCATACAAAGTGGCAGTTGCACTGTCTCTTTTTCTTGGATGGTTGGGAGCAGATCGA
TTTTACCTTGGATACCCTGCCTTGGGTTTGTTAAAGTTTTGCACTGTAGGGTTTTGTGGA
ATTGGGAGCCTAATTGATTTCATTCTTATTTCAATGCAGATTGTTGGACCTTCAGATGGA
AGTAGTTACATTATAGATTATTATGGAACCAGACTTACAAGACTAAGTATTACCAATGAG
ACATTTAGAAAAACGCAGTTATATCCATGAATATTTTTAAAAGAAACAGATTTGAGCCTT
CTTGATTTTGATAGAGAACTCTCAATATGTAAATTCCCAGGTTTTCTTTTTCCTTCTTCA
CATACCACTTTATGGATTCTTTTTAATTTTTTGTTGCTGATGTTTTTGTTTTGTTGTTTT
AGTTAAAAGCATATCAATCTGAGATTTATTTACTAGGATTTTCTTTGAGAGCTGCATGAT
AATAGAGTCTTTTCAGGCTACTGTCTCTGAGATAGATGACTTCCTACGCTGATATTCTTT
AATGCTTTTCCCAAAGGCAAGTTGCCTCTTGTCATCTTCACTTCTGAAAAATAAAATTAT
ACTTACTCCAAAAAAAAAAAAAAA
|
|
gi|61868030|ref|XP_592065.1| |
Protein identifier
|
gi|61868030|ref|XP_592065.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-174, gnl|bosTau2|chr3 (56418577-56418404) |
|
1-174, gnl|Hg17|chr1 (61902825-61902646) |
|
1-174, gnl|Mm7|chr4 (97775854-97775673) |
| |
|
239-364, gnl|bosTau2|chr3 (56404884-56404759) |
|
239-364, gnl|Hg17|chr1 (61887136-61887011) |
|
239-364, gnl|Mm7|chr4 (97767641-97767516) |
| |
|
649-968, gnl|bosTau2|chr3 (64761816-64761491) |
|
649-968, gnl|canFam2|chr5 (51316636-51316308) |
|
649-968, gnl|dasNov1|scaffold_3029 (3405-3082) |
|
649-968, gnl|echTel1|scaffold_318725 (44465-44787) |
|
649-968, gnl|hg17|chr1 (61858687-61858994) |
|
649-968, gnl|Hg17|chr1 (61859043-61858742) |
|
649-968, gnl|loxAfr1|scaffold_11097 (7567-7945) |
|
649-968, gnl|mm7|chr4 (97747932-97748240) |
|
649-968, gnl|Mm7|chr4 (97748287-97747980) |
|
649-968, gnl|monDom2|scaffold_40 (13005058-13004706) |
|
649-968, gnl|oryCun1|scaffold_98407 (1023-704) |
|
649-968, gnl|panTro1|chr1 (60176509-60176817) |
|
649-968, gnl|rheMac2|chr1 (64485377-64485688) |
|
649-968, gnl|rn3|chr5 (118770769-118771080) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-174, gnl|bosTau2|chr3 (56418577-56418404) |
|
1-174, gnl|Hg17|chr1 (61902825-61902646) |
|
1-174, gnl|Mm7|chr4 (97775854-97775673) |
| |
|
239-364, gnl|bosTau2|chr3 (56404884-56404759) |
|
239-364, gnl|Hg17|chr1 (61887136-61887011) |
|
239-364, gnl|Mm7|chr4 (97767641-97767516) |
| |
|
649-968, gnl|bosTau2|chr3 (64761816-64761491) |
|
649-968, gnl|canFam2|chr5 (51316636-51316308) |
|
649-968, gnl|dasNov1|scaffold_3029 (3405-3082) |
|
649-968, gnl|echTel1|scaffold_318725 (44465-44787) |
|
649-968, gnl|hg17|chr1 (61858687-61858994) |
|
649-968, gnl|Hg17|chr1 (61859043-61858742) |
|
649-968, gnl|loxAfr1|scaffold_11097 (7567-7945) |
|
649-968, gnl|mm7|chr4 (97747932-97748240) |
|
649-968, gnl|Mm7|chr4 (97748287-97747980) |
|
649-968, gnl|monDom2|scaffold_40 (13005058-13004706) |
|
649-968, gnl|oryCun1|scaffold_98407 (1023-704) |
|
649-968, gnl|panTro1|chr1 (60176509-60176817) |
|
649-968, gnl|rheMac2|chr1 (64485377-64485688) |
|
649-968, gnl|rn3|chr5 (118770769-118771080) |
|
cbe (0.717703) |
|
ret (0.643666) |
|
aor (0.390549) |
|
ova (0.387397) |
|
elu (0.385356) |
|
sug (0.381874) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
spc (0.340097) |
|
vin (0.332557) |
|
mga (0.32041) |
|
fco (0.314416) |
|
ski (0.29347) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
ute (0.265569) |
|
bla (0.248694) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
jej (0.197844) |
|
sin (0.174948) |
|
cut (0.169924) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
tra (0.123092) |
|
cty (0.10408) |
|
cbe (0.717703) |
|
ret (0.643666) |
|
aor (0.390549) |
|
ova (0.387397) |
|
elu (0.385356) |
|
sug (0.381874) |
|
mgm (0.360685) |
|
gul (0.355177) |
|
spc (0.340097) |
|
vin (0.332557) |
|
mga (0.32041) |
|
fco (0.314416) |
|
ski (0.29347) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
ute (0.265569) |
|
bla (0.248694) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
jej (0.197844) |
|
sin (0.174948) |
|
cut (0.169924) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
tra (0.123092) |
|
cty (0.10408) |
