Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J20.3

Sequence:


               
               CAGCGTTACTTGTTCCTGGGAAAGAAACGTAGGAGCTCTGTGTGCTTAGGGCAAGCTATG
ATGGAAGACCTTTGTTTTATTTAAGAGAGGAGAAAGAAAGGTGGGTCCTGGCTTATTTCC
CCCATTTCTATGAGGACTTGACAGAAGCTCTGCTGGAGTTCACTGCTGCTCTGACTCACC
TGGAGATGCTGCCTCCACTTCCCCTTTCCTGGCAACCATTGGGTCTGAAGACACAGTACA
TGCAAAGCCCATGTGACTGGCTTGAAGGACCCAGAGCAAAAAGGCCTCTCTCAGGAAACC
ATCTCCAGAACTGAGGCAGCAGTACTGCATACTGTCTCTAACCCTTTTTCTTTTTTTCTT
TTTAGGGCCGCACTTGTGGCATATGGAGGTTCCCAGGCTAGGGGTCCAATCAGAGCTACA
GCTGCCAGCCTGTGCCAGAGCCACAGCAACGCAGGATCTAAGCTGTGTCTGTGACCCACA
CCACAGCTCACAGCAGTGCCGGATCCTTAACCCACTGAGTGAGGCCAGGGATGAAACCCG
AAACCTCATCCTAGTTGGATTTGTTTCCGCTGAGATACGAAGGGAACTCCGTTCTCTAAC
CCTTAATGCCACACTTACCCATCTTTAAGAGTGGTTTATGGCCATCCTTGAAGTTTTATA
ATGGAAGGTTCTCCAATATCCCACGCCAGGTGGTTGAATCCTGCAATATTCTAGCATGAC
AGGGTGAGCTAGATACCTAAGAGGATGTGACCAAAGCCAGGTGGGAGCAGGCACGGGCCT
GTCTGCTTCACTCCAGCGTCATCCCTGCCACTTCACTGCATTAGCTTAGGGGCACGAGAT
AAACGAAAGGGCAGTTTTCCCAGCTGACCCACTCTGGCAAAATCAGGGAAAATAAAAGAC
CGTCTTCGACATCAAATTCCACTAGTTCAAGACAGTTGGGCAAGGAAAGTATTGTGAAGA
TAAGCCTTCAGAGATTTGGGGCGACTAGAACTGGTATTAGCCCTAGGCTTGGCGTCACTA
TAGTGACCGGAAGCAGAGCCCCCGAGTTGGGTGGATATGTGCATCATGCTTAGGACCTGG
GTTTGTCATCTCTGTAGTTTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGTTACTTGTTCCTGGGAAAGAAACGTAGGAGCTCTGTGTGCTTAGGGCAAGCTATG
ATGGAAGACCTTTGTTTTATTTAAGAGAGGAGAAAGAAAGGTGGGTCCTGGCTTATTTCC
CCCATTTCTATGAGGACTTGACAGAAGCTCTGCTGGAGTTCACTGCTGCTCTGACTCACC
TGGAGATGCTGCCTCCACTTCCCCTTTCCTGGCAACCATTGGGTCTGAAGACACAGTACA
TGCAAAGCCCATGTGACTGGCTTGAAGGACCCAGAGCAAAAAGGCCTCTCTCAGGAAACC
ATCTCCAGAACTGAGGCAGCAGTACTGCATACTGTCTCTAACCCTTTTTCTTTTTTTCTT
TTTAGGGCCGCACTTGTGGCATATGGAGGTTCCCAGGCTAGGGGTCCAATCAGAGCTACA
GCTGCCAGCCTGTGCCAGAGCCACAGCAACGCAGGATCTAAGCTGTGTCTGTGACCCACA
CCACAGCTCACAGCAGTGCCGGATCCTTAACCCACTGAGTGAGGCCAGGGATGAAACCCG
AAACCTCATCCTAGTTGGATTTGTTTCCGCTGAGATACGAAGGGAACTCCGTTCTCTAAC
CCTTAATGCCACACTTACCCATCTTTAAGAGTGGTTTATGGCCATCCTTGAAGTTTTATA
ATGGAAGGTTCTCCAATATCCCACGCCAGGTGGTTGAATCCTGCAATATTCTAGCATGAC
AGGGTGAGCTAGATACCTAAGAGGATGTGACCAAAGCCAGGTGGGAGCAGGCACGGGCCT
GTCTGCTTCACTCCAGCGTCATCCCTGCCACTTCACTGCATTAGCTTAGGGGCACGAGAT
AAACGAAAGGGCAGTTTTCCCAGCTGACCCACTCTGGCAAAATCAGGGAAAATAAAAGAC
CGTCTTCGACATCAAATTCCACTAGTTCAAGACAGTTGGGCAAGGAAAGTATTGTGAAGA
TAAGCCTTCAGAGATTTGGGGCGACTAGAACTGGTATTAGCCCTAGGCTTGGCGTCACTA
TAGTGACCGGAAGCAGAGCCCCCGAGTTGGGTGGATATGTGCATCATGCTTAGGACCTGG
GTTTGTCATCTCTGTAGTTTCCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-345, gnl|bosTau2|chr5 (67849562-67849231)
               

               
               1-345, gnl|Hg17|chr22 (37408237-37407883)
               

               
               1-345, gnl|Mm7|chr15 (79760063-79759765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-345, gnl|bosTau2|chr5 (67849562-67849231)
               

               
               1-345, gnl|Hg17|chr22 (37408237-37407883)
               

               
               1-345, gnl|Mm7|chr15 (79760063-79759765)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cty (0.20816)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fbs (0.175346)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)

	1-345, gnl\|bosTau2\|chr5 (67849562-67849231)
	1-345, gnl\|Hg17\|chr22 (37408237-37407883)
	1-345, gnl\|Mm7\|chr15 (79760063-79759765)