Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J23.3

Sequence:


               
               GGTGTACTGGACCGGCGACATCCCTGCCCACAATGTCTGGCACCAGTCTCGCCAAGACCA
GCTGCGCGCCCTGACCACGGTCACGGCCCTGGTGAAAAAGTTCCTGGGGCCGGTGCCTGT
GTACCCGGCCGTCGGCAACCACGAGAGCACGCCTGTCAACAGCTTCCCGCCCCCCTTCAT
AGAGGGCAACCAGTCTTCCCGCTGGCTCTACGATGCCATGGCCGAGGCCTGGGAGCCCTG
GCTGCCTGCTGAAGCCCTTCGCACCCTCAGAATCGGGGGGTTCTATGCCCTTTCCCCACG
CCCCGGCCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCGTGAGAACTTCTGGCT
CTTGATCAACGCCACCGATCCCGCTGGACAGCTCCAGTGGCTGGTGGGGGAGCTCCAGGC
TGCTGAGGACCGAGGAGACAAAGTGCATATCATCGGCCATATTCCCCCAGGGCACTGCCT
GAAGAGCTGGAGCTGGAATTATTACCGAATCGTGAACAGGTACGAGAACACCGTGGCGGC
GCAGTTCTTCGGCCACACGCACGTGGATGAGTTCGAGGTGTTCTACGACGAGGAGACCCT
GAGCCGGCCGCTCTCTGTCGCCTTCCTGGCGCCCAGCGCCACCACCTACATCAGCCTGAA
TCCCGGTTACCGGGTCTACCAAATAGACGGCAACTACTCGGGGAGCTCCCACGTGGTCCT
GGACCACGAGACCTACATCCTGAACCTGACGCAGGCGAATGAGCCCGGGGCCACCCCGCA
CTGGCAGCTCCTCTACAGGGCGCTGGAAACCTATGGGCTGCCCAACGCGCTGCCCGCCGC
CTGGCACGACCTGGTGTACCGCATGCGGAGCGACACACGACTTTTCCAGACCTTCTGGTT
TCTCTACCACAAGGGCCACCCACCCTCGGAGCCCTGTGGCACGCCCTGCCGCCTCGCCAC
ACTGTGCGCCCAGCTCTCCGCCCGCTCAGACAACCCTGCCCTGTGTCGCCACCTGGTGCC
AGAGGCAGGCCCCTCTGATGCCCAGAGCCTGCGGCCAAGGCCACCGTTCTGCTAGCATCC
TTCCCCAGAGCCGGGGAAGTGCATGTCTGAGGAAGGAGTGAAAACTCCAGAGGGCCACAC
AGTGGGAAGAAGGCCTGGTGGAAGCGCCTGTCGCTGCGCAAGCACGCCTCGGAAACAGGA
CCTCCTTCCCCGGAGCTGGTTTAGCCAAACGTGGGAGGGGGGCCGGCTGCTCTGAGGCCG
CTGCCCTTTCACAGCCACGCAGCAGAGGTCTAAGTTATTAGCTGCCCCGGGCAGACCCAA
CAAGCTGTCACCCCAGGCCTGTGCTCACCACCCAGGAGCCCTGTACTGTTGCTGCTGCCT
GGTTGCCAGGCTGTTAAAATAAAAAGAGACTTGGACTCCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTACTGGACCGGCGACATCCCTGCCCACAATGTCTGGCACCAGTCTCGCCAAGACCA
GCTGCGCGCCCTGACCACGGTCACGGCCCTGGTGAAAAAGTTCCTGGGGCCGGTGCCTGT
GTACCCGGCCGTCGGCAACCACGAGAGCACGCCTGTCAACAGCTTCCCGCCCCCCTTCAT
AGAGGGCAACCAGTCTTCCCGCTGGCTCTACGATGCCATGGCCGAGGCCTGGGAGCCCTG
GCTGCCTGCTGAAGCCCTTCGCACCCTCAGAATCGGGGGGTTCTATGCCCTTTCCCCACG
CCCCGGCCTCCGCCTCATCTCTCTCAATATGAATTTTTGTTCCCGTGAGAACTTCTGGCT
CTTGATCAACGCCACCGATCCCGCTGGACAGCTCCAGTGGCTGGTGGGGGAGCTCCAGGC
TGCTGAGGACCGAGGAGACAAAGTGCATATCATCGGCCATATTCCCCCAGGGCACTGCCT
GAAGAGCTGGAGCTGGAATTATTACCGAATCGTGAACAGGTACGAGAACACCGTGGCGGC
GCAGTTCTTCGGCCACACGCACGTGGATGAGTTCGAGGTGTTCTACGACGAGGAGACCCT
GAGCCGGCCGCTCTCTGTCGCCTTCCTGGCGCCCAGCGCCACCACCTACATCAGCCTGAA
TCCCGGTTACCGGGTCTACCAAATAGACGGCAACTACTCGGGGAGCTCCCACGTGGTCCT
GGACCACGAGACCTACATCCTGAACCTGACGCAGGCGAATGAGCCCGGGGCCACCCCGCA
CTGGCAGCTCCTCTACAGGGCGCTGGAAACCTATGGGCTGCCCAACGCGCTGCCCGCCGC
CTGGCACGACCTGGTGTACCGCATGCGGAGCGACACACGACTTTTCCAGACCTTCTGGTT
TCTCTACCACAAGGGCCACCCACCCTCGGAGCCCTGTGGCACGCCCTGCCGCCTCGCCAC
ACTGTGCGCCCAGCTCTCCGCCCGCTCAGACAACCCTGCCCTGTGTCGCCACCTGGTGCC
AGAGGCAGGCCCCTCTGATGCCCAGAGCCTGCGGCCAAGGCCACCGTTCTGCTAGCATCC
TTCCCCAGAGCCGGGGAAGTGCATGTCTGAGGAAGGAGTGAAAACTCCAGAGGGCCACAC
AGTGGGAAGAAGGCCTGGTGGAAGCGCCTGTCGCTGCGCAAGCACGCCTCGGAAACAGGA
CCTCCTTCCCCGGAGCTGGTTTAGCCAAACGTGGGAGGGGGGCCGGCTGCTCTGAGGCCG
CTGCCCTTTCACAGCCACGCAGCAGAGGTCTAAGTTATTAGCTGCCCCGGGCAGACCCAA
CAAGCTGTCACCCCAGGCCTGTGCTCACCACCCAGGAGCCCTGTACTGTTGCTGCTGCCT
GGTTGCCAGGCTGTTAAAATAAAAAGAGACTTGGACTCCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|553192|gb|AAA58378.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|553192|gb|AAA58378.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               864-983, - strand, RNAz p=0.954035
               

               
               1024-1138, + strand, RNAz p=0.531478

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               864-983, - strand, RNAz p=0.954035
               

               
               1024-1138, + strand, RNAz p=0.531478

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY649987, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY649987, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-270, gnl|bosTau2|chr15 (28622160-28622429)
               

               
               1-270, gnl|Hg17|chr11 (6369693-6369962)
               

               
               1-270, gnl|Mm7|chr7 (101612146-101612415)
               


               
               665-1418, gnl|bosTau2|chr15 (28624022-28624786)
               

               
               665-1418, gnl|Hg17|chr11 (6372003-6372800)
               

               
               665-1418, gnl|Mm7|chr7 (101614044-101614801)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-270, gnl|bosTau2|chr15 (28622160-28622429)
               

               
               1-270, gnl|Hg17|chr11 (6369693-6369962)
               

               
               1-270, gnl|Mm7|chr7 (101612146-101612415)
               


               
               665-1418, gnl|bosTau2|chr15 (28624022-28624786)
               

               
               665-1418, gnl|Hg17|chr11 (6372003-6372800)
               

               
               665-1418, gnl|Mm7|chr7 (101614044-101614801)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cov (0.396458)
               

               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

	864-983, - strand, RNAz p=0.954035
	1024-1138, + strand, RNAz p=0.531478

	1-270, gnl\|bosTau2\|chr15 (28622160-28622429)
	1-270, gnl\|Hg17\|chr11 (6369693-6369962)
	1-270, gnl\|Mm7\|chr7 (101612146-101612415)

	665-1418, gnl\|bosTau2\|chr15 (28624022-28624786)
	665-1418, gnl\|Hg17\|chr11 (6372003-6372800)
	665-1418, gnl\|Mm7\|chr7 (101614044-101614801)

	cov (0.396458)
	cga (0.279096)
	eru (0.240096)
	med (0.232504)
	nep (0.183925)
	cag (0.151194)
	lnt (0.142308)
	hlv (0.139256)
	ebs (0.118301)