Non-Coding RNA Search

Ss1.1-Pig4-TMW8052K01.3

Sequence:


               
               CAGAGTGGCAGGAAGGAAGTCTGGTCCTGGCAGCTTCCCCTGTGGAGAAGAATCAGGAGA
GCACTAAACATGGATAGATTTTTTTCCCTCGGCTCCTACAGAGTGGGTTTTCTCCTAAGG
CTTTTTTGGGGGGATATTGTCATCCTCTTGGGGTTTGCCAGCCAAGAGGTCAGAGTAATC
CATTATCCTGACTTCTCTGAGATCATGACAGGAAAGGAGCTGTCACAAGTCCCATTTCCT
GCTGAATGGTATTTGGGCTGTTCCATGCATTAGACATTCCAGATCATTTAGAGCTGGGTA
GCTGCTGCATGAGACTTTCATCGGCTGTGGCCAATTAGCTCTCAGCTGAGCTTCATGGGG
CTAGTGCAGCAGGGCCAGAGGTTGCTGTAGTATAAACTGAAAAAAAGAATAGGTAATTGC
TTTGTACACACACACAAAAAGTAACGATGGTGCTAATTTCCTGGTATAAATAAGCACTGC
CAAGGGTTGAGGGACTGGTGACTTGAGAAACCCAGGTTCCCGTTTAAGAGGAGATTTTAT
GTAGACCGGTTTCCTTGAGGCTCTCTTAGAGGAGGGGAAGGTAGAGCCTTGGTGTATCCT
GCACCCAACCCTGAAGTGGCACAGCACAGTCCAGAGGTGGAAGAGAGATACTGTTTCCAG
ATGAGGATGGACATTGAGTTTCTCAGGGCTGGTGTCACGTTGGCCATAGCCTCTGTCCAC
GTTGCCTGAACAAGTTGGTAGAGAGCTCCAGGTGTGGGGTCTCCCTAGGCTACCTTCTGC
CCCTCTCTACCTCTTCCACTCTCATGGGAGCACCTCTGTTGCTTATGAAGATTAAGGGTA
ATGTTTCTTAAAGAAGTGGAAAGAATTTATTTTAAGTAGAAATCCACAGCTTGGGAAGAA
ATGTTTCCTATCAACATAAGCAAAAACAGCACAGGTTAAACTTTTTTGTGTACCCTCTCT
AGAGCTACTTTCCCATGACTCAAAACATCAGGCTATTGAGGCTTCAGGTCTAACACCCTG
GAAATCCGGCAAAGCTTTGCAGACAGGAGGTGAGCCCAGGGAGTAGGAACAGAAATAAGT
GGTTTTGGTGCTTTCGACTTCCAGGGTAGGGGCAGAGAACAGGCGGTCTCCAGGTCTGAG
GTGGGTGCTGTGCCTGTGTGTGCGTGGTAGGTGAGAGTGTTTAAGATGGGCAAGTGCAGC
ACACAGGAGCTCATGGAAGAGCAGCTTTTTAAGTCTTGGCAAGGAAACAAGCTGACAATA
AAGATCTTTATATTTTTCAGAAAGGGGTGGAGGGGGTTAGAGCTGAGGTCCATCACTTTT
GTCCCCCCCACCATCCCCATAGATTGTCAGCTGTAAGTGAAACTCTTAGTGAAAAAGAGG
GGAGCCCTGTGCTAGGAGTCCCCATAAACATGTACTGTAATTCTTTGTATATAGAAAAAA
ATTACTGTAAAGTAAAGTTTAACTTTACTCTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGTGGCAGGAAGGAAGTCTGGTCCTGGCAGCTTCCCCTGTGGAGAAGAATCAGGAGA
GCACTAAACATGGATAGATTTTTTTCCCTCGGCTCCTACAGAGTGGGTTTTCTCCTAAGG
CTTTTTTGGGGGGATATTGTCATCCTCTTGGGGTTTGCCAGCCAAGAGGTCAGAGTAATC
CATTATCCTGACTTCTCTGAGATCATGACAGGAAAGGAGCTGTCACAAGTCCCATTTCCT
GCTGAATGGTATTTGGGCTGTTCCATGCATTAGACATTCCAGATCATTTAGAGCTGGGTA
GCTGCTGCATGAGACTTTCATCGGCTGTGGCCAATTAGCTCTCAGCTGAGCTTCATGGGG
CTAGTGCAGCAGGGCCAGAGGTTGCTGTAGTATAAACTGAAAAAAAGAATAGGTAATTGC
TTTGTACACACACACAAAAAGTAACGATGGTGCTAATTTCCTGGTATAAATAAGCACTGC
CAAGGGTTGAGGGACTGGTGACTTGAGAAACCCAGGTTCCCGTTTAAGAGGAGATTTTAT
GTAGACCGGTTTCCTTGAGGCTCTCTTAGAGGAGGGGAAGGTAGAGCCTTGGTGTATCCT
GCACCCAACCCTGAAGTGGCACAGCACAGTCCAGAGGTGGAAGAGAGATACTGTTTCCAG
ATGAGGATGGACATTGAGTTTCTCAGGGCTGGTGTCACGTTGGCCATAGCCTCTGTCCAC
GTTGCCTGAACAAGTTGGTAGAGAGCTCCAGGTGTGGGGTCTCCCTAGGCTACCTTCTGC
CCCTCTCTACCTCTTCCACTCTCATGGGAGCACCTCTGTTGCTTATGAAGATTAAGGGTA
ATGTTTCTTAAAGAAGTGGAAAGAATTTATTTTAAGTAGAAATCCACAGCTTGGGAAGAA
ATGTTTCCTATCAACATAAGCAAAAACAGCACAGGTTAAACTTTTTTGTGTACCCTCTCT
AGAGCTACTTTCCCATGACTCAAAACATCAGGCTATTGAGGCTTCAGGTCTAACACCCTG
GAAATCCGGCAAAGCTTTGCAGACAGGAGGTGAGCCCAGGGAGTAGGAACAGAAATAAGT
GGTTTTGGTGCTTTCGACTTCCAGGGTAGGGGCAGAGAACAGGCGGTCTCCAGGTCTGAG
GTGGGTGCTGTGCCTGTGTGTGCGTGGTAGGTGAGAGTGTTTAAGATGGGCAAGTGCAGC
ACACAGGAGCTCATGGAAGAGCAGCTTTTTAAGTCTTGGCAAGGAAACAAGCTGACAATA
AAGATCTTTATATTTTTCAGAAAGGGGTGGAGGGGGTTAGAGCTGAGGTCCATCACTTTT
GTCCCCCCCACCATCCCCATAGATTGTCAGCTGTAAGTGAAACTCTTAGTGAAAAAGAGG
GGAGCCCTGTGCTAGGAGTCCCCATAAACATGTACTGTAATTCTTTGTATATAGAAAAAA
ATTACTGTAAAGTAAAGTTTAACTTTACTCTTAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               812-929, - strand, RNAz p=0.999804
               

               
               1348-1473, + strand, RNAz p=0.915172

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               812-929, - strand, RNAz p=0.999804
               

               
               1348-1473, + strand, RNAz p=0.915172

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               847-953, + strand, RNAmicro p=0.999991
               

               
               1276-1419, - strand, RNAmicro p=0.99819
               

               
               826-972, - strand, RNAmicro p=0.911412

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               847-953, + strand, RNAmicro p=0.999991
               

               
               1276-1419, - strand, RNAmicro p=0.99819
               

               
               826-972, - strand, RNAmicro p=0.911412

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1473, gnl|bosTau2|chr7 (21496601-21498068)
               

               
               1-1473, gnl|Hg17|chr5 (176658375-176659822)
               

               
               1-1473, gnl|Mm7|chr13 (54397144-54398466)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1473, gnl|bosTau2|chr7 (21496601-21498068)
               

               
               1-1473, gnl|Hg17|chr5 (176658375-176659822)
               

               
               1-1473, gnl|Mm7|chr13 (54397144-54398466)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	812-929, - strand, RNAz p=0.999804
	1348-1473, + strand, RNAz p=0.915172

	847-953, + strand, RNAmicro p=0.999991
	1276-1419, - strand, RNAmicro p=0.99819
	826-972, - strand, RNAmicro p=0.911412

	1-1473, gnl\|bosTau2\|chr7 (21496601-21498068)
	1-1473, gnl\|Hg17\|chr5 (176658375-176659822)
	1-1473, gnl\|Mm7\|chr13 (54397144-54398466)

	mas (0.210305)
	fcc (0.197785)
	mcp (0.170648)
	hlv (0.139256)
	pla (0.133672)
	ese (0.126502)
	med (0.116252)
	nbm (0.0993246)
	jej (0.0989218)