Ss1.1-Pig4-TMW8052K03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGCAGAGCCGGAGCCTGGTGACGACTGCCGCGTTCGCTCCCTCAGTCCGCGCTCCAG CCCGCGGCCGTCCACCGCTGCACCCCGCCAACCCGCCCCTCTCCTGTGCCAGGAACTGAC AGGAACCATGCCTCACCAATACCCAGCCCTGACCCCGGAGCAGAAGAAGGAGCTCTCTGA CATTGCTCACCGCATCGTGGCTCCGGGCAAGGGCATCCTGGCTGCAGATGAGTCCACTGG GAGCATTGCCAAGCGACTGCAGTCCATCGGCACCGAGAACACCGAGGAGAACCGGCGCTT CTACCGCCAGCTGCTGCTGACTGCCGACGACCGCGTGAATCCCTGCATTGGGGGCGTCAT CCTCTTCCACGAGACGCTCTACCAGAAAGCCGATGATGGGCGTCCCTTCCCCCAAGTTAT CAAAGCCAAGGGCGGTGTTGTGGGCATCAAGGTGGACAAGGGTGTGGTACCCCTGGCAGG AACCAACGGCGAGACAACCACCCAAGGGCTGGATGGCCTGTCAGAGCGCTGTGCCCAGTA CAAGAAGGACGGAGCTGACTTTGCCAAGTGGCGCTGTGTGCTGAAGATCGGGGAGCACAC CCCCTCCTCCCTCGCCATCATGGAAAACGCCAACGTCCTGGCGCGTTATGCCAGCATCTG CCAGCAGAATGGCATTGTGCCCATCGTGGAGCCCGAGATCCTCCCCGATGGGGACCATGA CTTGAAACGCTGTCAGTATGTAACCGAGAAGGTGCTGGCTGCTGTCTACAAGGCTCTGAG CGACCACCACATCTACCTGGAAGGCACCTTGCTGAAGCCCAATATGGTAACCCCAGGCCA CGCCTGCACCCAGAAATATTCTCACGAGGAGATTGCCATGGCAACTGTCACGGCGCTGCG CCGCACAGTGCCCCCCGCTGTCCCTGGGATCACCTTCCTCTCCGGAGGCCAGAGCGAGGA GGAGGCCTCCATCAACCTCAACGCCATCAACAAGTGCCCCCTGCTGAAGCCGTGGGCCCT GACCTTCTCTTATGGCCGAGCCCTGCAGGCCTCGGCCCTGAAGGCCTGGGGCGGAAAGAA GGAAAACCTGAAGGCCGCCCAGGAAGAATATGTCAAGCGAGCCCTGGCCAACAGCCTTGC CTGCCAAGGAAAGTACACCCCGAGCGGTAAGGCGGGGGCTGCCGCCAGCGAGTCCCTCTT CATCTCTAACCATGCCTACTAAGCGGGGAGGTGCTGAGGCTGCCCCCTCAACACGCCAGG CCCCGCCCCCTCCCACCCTCCCTCTCCAAGAGAGGGGGCCTCGGGGGCTCCAGGCCGCCC TTTCCCAACACTTTTGCCTCCCTCGTGACACTGGTGCCTGGTGTTGTCTGTATACGCTAA CTCCATCACCCTCTCGAGCCTACTGCCAATAAACAGCCATTGAAGGGGAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGCAGAGCCGGAGCCTGGTGACGACTGCCGCGTTCGCTCCCTCAGTCCGCGCTCCAG CCCGCGGCCGTCCACCGCTGCACCCCGCCAACCCGCCCCTCTCCTGTGCCAGGAACTGAC AGGAACCATGCCTCACCAATACCCAGCCCTGACCCCGGAGCAGAAGAAGGAGCTCTCTGA CATTGCTCACCGCATCGTGGCTCCGGGCAAGGGCATCCTGGCTGCAGATGAGTCCACTGG GAGCATTGCCAAGCGACTGCAGTCCATCGGCACCGAGAACACCGAGGAGAACCGGCGCTT CTACCGCCAGCTGCTGCTGACTGCCGACGACCGCGTGAATCCCTGCATTGGGGGCGTCAT CCTCTTCCACGAGACGCTCTACCAGAAAGCCGATGATGGGCGTCCCTTCCCCCAAGTTAT CAAAGCCAAGGGCGGTGTTGTGGGCATCAAGGTGGACAAGGGTGTGGTACCCCTGGCAGG AACCAACGGCGAGACAACCACCCAAGGGCTGGATGGCCTGTCAGAGCGCTGTGCCCAGTA CAAGAAGGACGGAGCTGACTTTGCCAAGTGGCGCTGTGTGCTGAAGATCGGGGAGCACAC CCCCTCCTCCCTCGCCATCATGGAAAACGCCAACGTCCTGGCGCGTTATGCCAGCATCTG CCAGCAGAATGGCATTGTGCCCATCGTGGAGCCCGAGATCCTCCCCGATGGGGACCATGA CTTGAAACGCTGTCAGTATGTAACCGAGAAGGTGCTGGCTGCTGTCTACAAGGCTCTGAG CGACCACCACATCTACCTGGAAGGCACCTTGCTGAAGCCCAATATGGTAACCCCAGGCCA CGCCTGCACCCAGAAATATTCTCACGAGGAGATTGCCATGGCAACTGTCACGGCGCTGCG CCGCACAGTGCCCCCCGCTGTCCCTGGGATCACCTTCCTCTCCGGAGGCCAGAGCGAGGA GGAGGCCTCCATCAACCTCAACGCCATCAACAAGTGCCCCCTGCTGAAGCCGTGGGCCCT GACCTTCTCTTATGGCCGAGCCCTGCAGGCCTCGGCCCTGAAGGCCTGGGGCGGAAAGAA GGAAAACCTGAAGGCCGCCCAGGAAGAATATGTCAAGCGAGCCCTGGCCAACAGCCTTGC CTGCCAAGGAAAGTACACCCCGAGCGGTAAGGCGGGGGCTGCCGCCAGCGAGTCCCTCTT CATCTCTAACCATGCCTACTAAGCGGGGAGGTGCTGAGGCTGCCCCCTCAACACGCCAGG CCCCGCCCCCTCCCACCCTCCCTCTCCAAGAGAGGGGGCCTCGGGGGCTCCAGGCCGCCC TTTCCCAACACTTTTGCCTCCCTCGTGACACTGGTGCCTGGTGTTGTCTGTATACGCTAA CTCCATCACCCTCTCGAGCCTACTGCCAATAAACAGCCATTGAAGGGGAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 544-663, - strand, RNAz p=0.556694 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 544-663, - strand, RNAz p=0.556694 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-113, gnl|bosTau2|chr25 (25397943-25398050) | |
| 1-113, gnl|canFam2|chr6 (21090988-21091167) | |
| 1-113, gnl|dasNov1|scaffold_127841 (7036-7191) | |
| 1-113, gnl|echTel1|scaffold_282905 (10376-10225) | |
| 1-113, gnl|hg17|chr16 (29984567-29984746) | |
| 1-113, gnl|Hg17|chr16 (29984639-29984750) | |
| 1-113, gnl|loxAfr1|scaffold_1209 (107269-107108) | |
| 1-113, gnl|mm7|chr7 (122895758-122895608) | |
| 1-113, gnl|Mm7|chr7 (122895702-122895602) | |
| 1-113, gnl|monDom2|scaffold_5 (119673888-119673749) | |
| 1-113, gnl|oryCun1|scaffold_204194 (19149-18975) | |
| 1-113, gnl|panTro1|chr18_random (16687963-16688142) | |
| 1-113, gnl|rheMac2|chr20 (28045852-28046031) | |
| 1-113, gnl|rn3|chr1 (186124509-186124359) | |
| 233-454, gnl|bosTau2|chr19 (13574103-13573882) | |
| 233-454, gnl|canFam2|chr9 (46106604-46106836) | |
| 233-454, gnl|danRer3|chr15 (11970853-11971085) | |
| 233-454, gnl|dasNov1|scaffold_9430 (8699-8467) | |
| 233-454, gnl|echTel1|scaffold_317923 (5475-5707) | |
| 233-454, gnl|fr1|chrUn (15705750-15705982) | |
| 233-454, gnl|galGal2|chrZ (27567009-27567330) | |
| 233-454, gnl|hg17|chr17 (23926255-23926487) | |
| 233-454, gnl|Hg17|chr17 (23926482-23926265) | |
| 233-454, gnl|loxAfr1|scaffold_66389 (1030-1262) | |
| 233-454, gnl|mm7|chr11 (78406407-78406173) | |
| 233-454, gnl|Mm7|chr11 (78406176-78406395) | |
| 233-454, gnl|monDom2|scaffold_44 (14491039-14491271) | |
| 233-454, gnl|oryCun1|scaffold_190404 (77622-77390) | |
| 233-454, gnl|panTro1|chr19_random (12738864-12739096) | |
| 233-454, gnl|rheMac2|chr16 (23770665-23770897) | |
| 233-454, gnl|rn3|chr10 (64324355-64324589) | |
| 233-454, gnl|tetNig1|chr16 (3848079-3847847) | |
| 233-454, gnl|xenTro1|scaffold_50 (1449183-1448952) | |
| 505-679, gnl|bosTau2|chr19 (13573624-13573449) | |
| 505-679, gnl|Hg17|chr17 (23926003-23925832) | |
| 505-679, gnl|Mm7|chr11 (78406622-78406795) | |
| 750-934, gnl|bosTau2|chr19 (13573025-13572841) | |
| 750-934, gnl|Hg17|chr17 (23925392-23925204) | |
| 750-934, gnl|Mm7|chr11 (78407215-78407396) | |
| 1126-1431, gnl|bosTau2|chr25 (25402192-25402501) | |
| 1126-1431, gnl|Hg17|chr16 (29988938-29989237) | |
| 1126-1431, gnl|Mm7|chr7 (122892073-122891791) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-113, gnl|bosTau2|chr25 (25397943-25398050) | |
| 1-113, gnl|canFam2|chr6 (21090988-21091167) | |
| 1-113, gnl|dasNov1|scaffold_127841 (7036-7191) | |
| 1-113, gnl|echTel1|scaffold_282905 (10376-10225) | |
| 1-113, gnl|hg17|chr16 (29984567-29984746) | |
| 1-113, gnl|Hg17|chr16 (29984639-29984750) | |
| 1-113, gnl|loxAfr1|scaffold_1209 (107269-107108) | |
| 1-113, gnl|mm7|chr7 (122895758-122895608) | |
| 1-113, gnl|Mm7|chr7 (122895702-122895602) | |
| 1-113, gnl|monDom2|scaffold_5 (119673888-119673749) | |
| 1-113, gnl|oryCun1|scaffold_204194 (19149-18975) | |
| 1-113, gnl|panTro1|chr18_random (16687963-16688142) | |
| 1-113, gnl|rheMac2|chr20 (28045852-28046031) | |
| 1-113, gnl|rn3|chr1 (186124509-186124359) | |
| 233-454, gnl|bosTau2|chr19 (13574103-13573882) | |
| 233-454, gnl|canFam2|chr9 (46106604-46106836) | |
| 233-454, gnl|danRer3|chr15 (11970853-11971085) | |
| 233-454, gnl|dasNov1|scaffold_9430 (8699-8467) | |
| 233-454, gnl|echTel1|scaffold_317923 (5475-5707) | |
| 233-454, gnl|fr1|chrUn (15705750-15705982) | |
| 233-454, gnl|galGal2|chrZ (27567009-27567330) | |
| 233-454, gnl|hg17|chr17 (23926255-23926487) | |
| 233-454, gnl|Hg17|chr17 (23926482-23926265) | |
| 233-454, gnl|loxAfr1|scaffold_66389 (1030-1262) | |
| 233-454, gnl|mm7|chr11 (78406407-78406173) | |
| 233-454, gnl|Mm7|chr11 (78406176-78406395) | |
| 233-454, gnl|monDom2|scaffold_44 (14491039-14491271) | |
| 233-454, gnl|oryCun1|scaffold_190404 (77622-77390) | |
| 233-454, gnl|panTro1|chr19_random (12738864-12739096) | |
| 233-454, gnl|rheMac2|chr16 (23770665-23770897) | |
| 233-454, gnl|rn3|chr10 (64324355-64324589) | |
| 233-454, gnl|tetNig1|chr16 (3848079-3847847) | |
| 233-454, gnl|xenTro1|scaffold_50 (1449183-1448952) | |
| 505-679, gnl|bosTau2|chr19 (13573624-13573449) | |
| 505-679, gnl|Hg17|chr17 (23926003-23925832) | |
| 505-679, gnl|Mm7|chr11 (78406622-78406795) | |
| 750-934, gnl|bosTau2|chr19 (13573025-13572841) | |
| 750-934, gnl|Hg17|chr17 (23925392-23925204) | |
| 750-934, gnl|Mm7|chr11 (78407215-78407396) | |
| 1126-1431, gnl|bosTau2|chr25 (25402192-25402501) | |
| 1126-1431, gnl|Hg17|chr16 (29988938-29989237) | |
| 1126-1431, gnl|Mm7|chr7 (122892073-122891791) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| mas (5.46793) | |
| nms (2.78015) | |
| ton (2.2815) | |
| clu (1.5554) | |
| eep (1.47077) | |
| jca (1.36752) | |
| cov (1.32153) | |
| hyp (1.28553) | |
| hlv (1.25331) | |
| eye (1.19352) | |
| nlu (1.15009) | |
| cty (1.14488) | |
| ese (1.13852) | |
| nco (1.13214) | |
| nep (1.10355) | |
| col (0.780031) | |
| cbr (0.767853) | |
| ctl (0.765345) | |
| cag (0.755972) | |
| eru (0.720288) | |
| ill (0.702371) | |
| ebs (0.591506) | |
| fce (0.543183) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| csp (0.483559) | |
| pty (0.428143) | |
| nca (0.410621) | |
| nmm (0.398406) | |
| ute (0.398353) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| jej (0.296765) | |
| eje (0.296501) | |
| cga (0.279096) | |
| med (0.232504) | |
| ece (0.229305) | |
| fli (0.202881) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (5.46793) | |
| nms (2.78015) | |
| ton (2.2815) | |
| clu (1.5554) | |
| eep (1.47077) | |
| jca (1.36752) | |
| cov (1.32153) | |
| hyp (1.28553) | |
| hlv (1.25331) | |
| eye (1.19352) | |
| nlu (1.15009) | |
| cty (1.14488) | |
| ese (1.13852) | |
| nco (1.13214) | |
| nep (1.10355) | |
| col (0.780031) | |
| cbr (0.767853) | |
| ctl (0.765345) | |
| cag (0.755972) | |
| eru (0.720288) | |
| ill (0.702371) | |
| ebs (0.591506) | |
| fce (0.543183) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| csp (0.483559) | |
| pty (0.428143) | |
| nca (0.410621) | |
| nmm (0.398406) | |
| ute (0.398353) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| jej (0.296765) | |
| eje (0.296501) | |
| cga (0.279096) | |
| med (0.232504) | |
| ece (0.229305) | |
| fli (0.202881) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |