Non-Coding RNA Search

Ss1.1-Pig4-TMW8052K09.3

Sequence:


               
               CAGATTGTGGATAATAAAGAATTAATGATGATTTTTTAGGCGATGTAGCATTCTACAGCA
GGGTTAAACTAGTATCAAGAACAGTCAGCCTGGCCAGTACCAAAGCTTACTGACCAGTTG
CTGATTGGTTGGTTGGTGTGTGCATTTGTGTGTGTGTATATTTTTCCCCCATGAACCCTT
TTTTTAATCCTGTGGCTTTTTCACTTACAACTAGCCTAACCCTGTAATTTCCCTGTGTCC
AAGAAAACAATCACAAAATGCTGGTTTAAATACTTTGATACATTTGGCAAATCTGCCATC
TTAATGCAGCCTATGGAGTTGGATTGAAAGTCAGTAATCAGTCCTTTATAACGTCACTAA
ACGGAAACTCAGAGCTACCCTCATTGAGGAAGGAGGGCACTCTGTCAGCCTGAACTGTCA
GCGTAGTGACAATGTGTTTTGTCATCTTTGTTTCCACCTCTTGGCACACTGCTTACGTAA
AATTTTTAAAGGCTTCGGTTTTACCCTCCACGCAGTTTTTGGCCTTTAATTTCCAAGTGT
TTTGTAGTTGGCGACTGCAGAGAGTGCATTGTCCTATCATTCATTCCTTGACCTGGTCTG
CTTTCTACGGTCACCTGGTCTCGAGACCGTGGGGACCTCTGTGCCGTGTTTCCTTGTGTC
CGCGTAACGCAGTAGAGGCTACTTTGCCTGCTTCTTCTTTCTCAGCCATTTTGTAAAACC
TGTAATCATGAAGCGATTGCTTGAGAAAAATAACAAACATAGACTAGACTGACCAAGATG
GTTTATAATTTCTTTTTTTTTTTAAACTAGGTTATTTATAATGTATTTCTGAACCACTTG
GCAGAGACATTCACAACACTTAATGTTCATATTTTGAGTAATGGAAGCTAAAACCTTGTC
TGCTTTTTGGTACTACATGCATTAGTAGAAGGTTAAATAAGTTTTGTTCTCCACTGAAAT
AATATTTAACATCTCAGAAGAAATCTTGCATGTTCTGTAGTTTTGTATTAAGTCAGTCAT
TTCGTATGCACTATAGCAAGTGAAAACAGGTGATTTACCTGTCGACACTAGTATGTAACA
AACCCCCGCTTGCAGCTTCAGGCTGGTTATCTGTAGATTACAGTTCCCCTACGGCACTGG
AATTGGCCAAGTAGTTCTCTGCCCAGCACACCCTCTAAACCCAGTGGGGCATGGAGGGGA
GGTGACTCACGCGGTGGGCGGAAGCTGCAAGCAAGTAGGCCTCCACTCATTGATTTCTTT
CCCCCAAATAATGATTTCAAATCTGTGTGTACCTATTTTTTTTTTCCTAAAACTTCACCT
GAGCTGCTGTTTTCTTCCATGCAATACTGTATACTCGATGGTGTATAGAAGAAGCTGGTG
AGAGTGCCCTCCTACATAAGCAATTGCAGTGTTTTGCATGCAAAATTTAAAAAATTTAAA
TTGTCCTGATTCTATTTTGTAAATGGAGAAACAATCATATCTTTCTAAGCAGTAATGGAA
GATGACTAGTGCTTTGTGCGTTTTGATATAGTTGAGTTCATTTTTTCCACAATGTAATAC
ATTTGACACAATTGGGTTTCTCATATTATCCTAGTTCATGTACATCAGAATGCTAAATAA
TACTGTGTTTTAAGTTTTGTGTTGCAAGAACAAATGGAATAAACTTGAATTGTGCTACAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTGTGGATAATAAAGAATTAATGATGATTTTTTAGGCGATGTAGCATTCTACAGCA
GGGTTAAACTAGTATCAAGAACAGTCAGCCTGGCCAGTACCAAAGCTTACTGACCAGTTG
CTGATTGGTTGGTTGGTGTGTGCATTTGTGTGTGTGTATATTTTTCCCCCATGAACCCTT
TTTTTAATCCTGTGGCTTTTTCACTTACAACTAGCCTAACCCTGTAATTTCCCTGTGTCC
AAGAAAACAATCACAAAATGCTGGTTTAAATACTTTGATACATTTGGCAAATCTGCCATC
TTAATGCAGCCTATGGAGTTGGATTGAAAGTCAGTAATCAGTCCTTTATAACGTCACTAA
ACGGAAACTCAGAGCTACCCTCATTGAGGAAGGAGGGCACTCTGTCAGCCTGAACTGTCA
GCGTAGTGACAATGTGTTTTGTCATCTTTGTTTCCACCTCTTGGCACACTGCTTACGTAA
AATTTTTAAAGGCTTCGGTTTTACCCTCCACGCAGTTTTTGGCCTTTAATTTCCAAGTGT
TTTGTAGTTGGCGACTGCAGAGAGTGCATTGTCCTATCATTCATTCCTTGACCTGGTCTG
CTTTCTACGGTCACCTGGTCTCGAGACCGTGGGGACCTCTGTGCCGTGTTTCCTTGTGTC
CGCGTAACGCAGTAGAGGCTACTTTGCCTGCTTCTTCTTTCTCAGCCATTTTGTAAAACC
TGTAATCATGAAGCGATTGCTTGAGAAAAATAACAAACATAGACTAGACTGACCAAGATG
GTTTATAATTTCTTTTTTTTTTTAAACTAGGTTATTTATAATGTATTTCTGAACCACTTG
GCAGAGACATTCACAACACTTAATGTTCATATTTTGAGTAATGGAAGCTAAAACCTTGTC
TGCTTTTTGGTACTACATGCATTAGTAGAAGGTTAAATAAGTTTTGTTCTCCACTGAAAT
AATATTTAACATCTCAGAAGAAATCTTGCATGTTCTGTAGTTTTGTATTAAGTCAGTCAT
TTCGTATGCACTATAGCAAGTGAAAACAGGTGATTTACCTGTCGACACTAGTATGTAACA
AACCCCCGCTTGCAGCTTCAGGCTGGTTATCTGTAGATTACAGTTCCCCTACGGCACTGG
AATTGGCCAAGTAGTTCTCTGCCCAGCACACCCTCTAAACCCAGTGGGGCATGGAGGGGA
GGTGACTCACGCGGTGGGCGGAAGCTGCAAGCAAGTAGGCCTCCACTCATTGATTTCTTT
CCCCCAAATAATGATTTCAAATCTGTGTGTACCTATTTTTTTTTTCCTAAAACTTCACCT
GAGCTGCTGTTTTCTTCCATGCAATACTGTATACTCGATGGTGTATAGAAGAAGCTGGTG
AGAGTGCCCTCCTACATAAGCAATTGCAGTGTTTTGCATGCAAAATTTAAAAAATTTAAA
TTGTCCTGATTCTATTTTGTAAATGGAGAAACAATCATATCTTTCTAAGCAGTAATGGAA
GATGACTAGTGCTTTGTGCGTTTTGATATAGTTGAGTTCATTTTTTCCACAATGTAATAC
ATTTGACACAATTGGGTTTCTCATATTATCCTAGTTCATGTACATCAGAATGCTAAATAA
TACTGTGTTTTAAGTTTTGTGTTGCAAGAACAAATGGAATAAACTTGAATTGTGCTACAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|11493481|gb|AAG35514.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11493481|gb|AAG35514.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1232-1698, gnl|bosTau2|chr16 (49120745-49120281)
               

               
               1232-1698, gnl|Hg17|chr7 (135069219-135068764)
               

               
               1232-1698, gnl|Mm7|chr6 (35440867-35440426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1232-1698, gnl|bosTau2|chr16 (49120745-49120281)
               

               
               1232-1698, gnl|Hg17|chr7 (135069219-135068764)
               

               
               1232-1698, gnl|Mm7|chr6 (35440867-35440426)

Expressed library(ies): 49 entry(ies)

More info

Expressed library(ies): 49 entry(ies)

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               mgp (0.692042)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               gul (0.355177)
               

               
               ebs (0.354904)
               

               
               eye (0.341006)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.692042)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               gul (0.355177)
               

               
               ebs (0.354904)
               

               
               eye (0.341006)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               ute (0.265569)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1232-1698, gnl\|bosTau2\|chr16 (49120745-49120281)
	1232-1698, gnl\|Hg17\|chr7 (135069219-135068764)
	1232-1698, gnl\|Mm7\|chr6 (35440867-35440426)

	mgp (0.692042)
	aor (0.585823)
	spc (0.566829)
	gul (0.355177)
	ebs (0.354904)
	eye (0.341006)
	tbr (0.308356)
	sme (0.305437)
	isp (0.300752)
	fat (0.294855)
	cte (0.29274)
	lin (0.291206)
	ssp (0.271039)
	ste (0.270416)
	ute (0.265569)
	kid (0.259471)
	sug (0.254582)
	tra (0.246184)
	cly (0.241284)
	jca (0.22792)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	mcp (0.170648)
	cki (0.165235)
	cje (0.165235)
	fco (0.157208)
	lun (0.150489)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	cbr (0.127975)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)