Non-Coding RNA Search

Ss1.1-Pig4-TMW8052K14.3

Sequence:


               
               TAAAAAAAAGAAAATAGAAAAACTAAAAAAAAAAGTTTTGCAAATGTACAGATTAAGTCC
AATATTTTGATTAACCACCTGCATGTTTTATTAAAGATTTTGATAATGTGGATGTTTACA
CTTTGCATGATCCTAGCCGAGTACTTTACCCCCGATGATGCGCAAAACATATACAAGATG
ATCATTCATAACTGATTTTTATAGAATACTTTTTACATGCGGGACTCCATCTGTTATGTA
AGGATTATATGACTATCGCACATTCTCTTCTGGTTTCACAAACCCATTTATACATATTTC
TTAGCGAGACTCATTGTACATGTATTGAAGCTAGAATCAAGTCAAGAAAAATAAAGCCCC
GTTCTCCAACTGCGAAATGTGCTTCTCCATAATGAACAATAGTCACCAGCACAGAATAAT
CTCCAACATTTTCTAAATTCTAATTGCCAACTGTTTCTATTTATATTTGATTTATATTTC
ATTTGGAGTCTGTTACATGGCAGCTCCGGCAGACTAGATCTTGTTTTTTCCAATGCAGCG
TAATGAAGATGATCTATTTCCTTTCAAATAATCTTTGAGATCCCAGGGAAAAAAAAAAAA
AAAACTGCTCTGCTCTATGGAGCTGCAATGTAAATGTGTTTGTTTAAAAAACAGATGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAAAAAGAAAATAGAAAAACTAAAAAAAAAAGTTTTGCAAATGTACAGATTAAGTCC
AATATTTTGATTAACCACCTGCATGTTTTATTAAAGATTTTGATAATGTGGATGTTTACA
CTTTGCATGATCCTAGCCGAGTACTTTACCCCCGATGATGCGCAAAACATATACAAGATG
ATCATTCATAACTGATTTTTATAGAATACTTTTTACATGCGGGACTCCATCTGTTATGTA
AGGATTATATGACTATCGCACATTCTCTTCTGGTTTCACAAACCCATTTATACATATTTC
TTAGCGAGACTCATTGTACATGTATTGAAGCTAGAATCAAGTCAAGAAAAATAAAGCCCC
GTTCTCCAACTGCGAAATGTGCTTCTCCATAATGAACAATAGTCACCAGCACAGAATAAT
CTCCAACATTTTCTAAATTCTAATTGCCAACTGTTTCTATTTATATTTGATTTATATTTC
ATTTGGAGTCTGTTACATGGCAGCTCCGGCAGACTAGATCTTGTTTTTTCCAATGCAGCG
TAATGAAGATGATCTATTTCCTTTCAAATAATCTTTGAGATCCCAGGGAAAAAAAAAAAA
AAAACTGCTCTGCTCTATGGAGCTGCAATGTAAATGTGTTTGTTTAAAAAACAGATGGGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-660, gnl|bosTau2|chr6 (31044044-31044689)
               

               
               5-660, gnl|Hg17|chr4 (41541931-41542579)
               

               
               5-660, gnl|Mm7|chr5 (66411601-66412268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-660, gnl|bosTau2|chr6 (31044044-31044689)
               

               
               5-660, gnl|Hg17|chr4 (41541931-41542579)
               

               
               5-660, gnl|Mm7|chr5 (66411601-66412268)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               sag (0.36543)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	5-660, gnl\|bosTau2\|chr6 (31044044-31044689)
	5-660, gnl\|Hg17\|chr4 (41541931-41542579)
	5-660, gnl\|Mm7\|chr5 (66411601-66412268)

	sag (0.36543)
	vin (0.332557)
	tbr (0.308356)
	liv (0.292569)
	cbe (0.239234)
	fhi (0.169578)
	lun (0.150489)
	lyg (0.133103)
	kid (0.129735)
	ese (0.126502)
	spc (0.113366)