Non-Coding RNA Search

Ss1.1-Pig4-TMW8052K23.3

Sequence:


               
               TGTGTCCGTTGTGGGCCGGCGACCGGGTGAGCTCCGCGCGGTCTCAGCCCGAGTGTGGAC
CTGGGTTGCGATGAGCTGTGTCCGTTGTGGGCCGGCGACCGGGGCCCTCCGGGCACTGAG
GCTGATCCGCTGGACTTCGCGAAGCCTGCATCAGCCCCCTGGTGGCCGGGCTCGAGAGCA
GCCCGCGCTCGAAGGCGAGGAGGAGGACGACCCTGACCGTCCTCTTCAGTTTTCCTCCAG
CGAAGCCAACCCGTTCCGGTGGACAGTGCAGCACTCCCTGGGAAAGGAGCAGCAGCGGCC
CTGGTGGAGAGTGCTGCCCTTCAGCCTGTCAGTCATGGCTCTGATCATCTGGTGCTTCTT
TAGGCAGGAGACCAGTGCGGACGGGTGGTTGAGACAGATATTGCAAGAAGAGGTGCCAGA
GCCCGGAGATCGTTCTGAAGAGCGTTGCGACCTCGGTGGCCCACGGGGCGAGAACTTAAC
GGCGCGCCAGCAGTGAGGGAACCGGCATTCGCCTTTAGGCTTTGACGCGACAGAACCGGT
CGCGTTTAACCGTTTCTGCCCTGGCTATGCGGGTTCCCAGACCGAAGGGCTTGAATGTCG
TGCCTGGTCATGCTGACCCCTTGCAGGCAGAGAAGATTGGCTGCAGATCGCTCCCAGCTC
CTGCCTGATGCTTGATGCCCGTCGAATACGCCCAAAGACATTACAGGTCCATAGGAAAAA
GGTTGTGGTTGCAGCGTGTGCTGTTGGATTTGCGGTGTCTTTGCACAACATTATCATGTT
TCCAGAGCCATGCTGGCGACACTTGTAGTCCAGTTGAACTTGCTTTCTGAGGCAGAATCA
CTGGCAGAAGGGTTTAAACCTGTTTATTTTACACTGGACTGTGACGTGTGTAAACTGATG
TTAGTTTAACAAACTAACAATAAATTTTAACGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTCCGTTGTGGGCCGGCGACCGGGTGAGCTCCGCGCGGTCTCAGCCCGAGTGTGGAC
CTGGGTTGCGATGAGCTGTGTCCGTTGTGGGCCGGCGACCGGGGCCCTCCGGGCACTGAG
GCTGATCCGCTGGACTTCGCGAAGCCTGCATCAGCCCCCTGGTGGCCGGGCTCGAGAGCA
GCCCGCGCTCGAAGGCGAGGAGGAGGACGACCCTGACCGTCCTCTTCAGTTTTCCTCCAG
CGAAGCCAACCCGTTCCGGTGGACAGTGCAGCACTCCCTGGGAAAGGAGCAGCAGCGGCC
CTGGTGGAGAGTGCTGCCCTTCAGCCTGTCAGTCATGGCTCTGATCATCTGGTGCTTCTT
TAGGCAGGAGACCAGTGCGGACGGGTGGTTGAGACAGATATTGCAAGAAGAGGTGCCAGA
GCCCGGAGATCGTTCTGAAGAGCGTTGCGACCTCGGTGGCCCACGGGGCGAGAACTTAAC
GGCGCGCCAGCAGTGAGGGAACCGGCATTCGCCTTTAGGCTTTGACGCGACAGAACCGGT
CGCGTTTAACCGTTTCTGCCCTGGCTATGCGGGTTCCCAGACCGAAGGGCTTGAATGTCG
TGCCTGGTCATGCTGACCCCTTGCAGGCAGAGAAGATTGGCTGCAGATCGCTCCCAGCTC
CTGCCTGATGCTTGATGCCCGTCGAATACGCCCAAAGACATTACAGGTCCATAGGAAAAA
GGTTGTGGTTGCAGCGTGTGCTGTTGGATTTGCGGTGTCTTTGCACAACATTATCATGTT
TCCAGAGCCATGCTGGCGACACTTGTAGTCCAGTTGAACTTGCTTTCTGAGGCAGAATCA
CTGGCAGAAGGGTTTAAACCTGTTTATTTTACACTGGACTGTGACGTGTGTAAACTGATG
TTAGTTTAACAAACTAACAATAAATTTTAACGTGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55643125|ref|XP_510728.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55643125|ref|XP_510728.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-902, gnl|bosTau2|chr25 (3823032-3823903)
               

               
               15-902, gnl|Hg17|chr16 (1410705-1409799)
               

               
               15-902, gnl|Mm7|chr17 (23367720-23368590)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-902, gnl|bosTau2|chr25 (3823032-3823903)
               

               
               15-902, gnl|Hg17|chr16 (1410705-1409799)
               

               
               15-902, gnl|Mm7|chr17 (23367720-23368590)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cbe (0.239234)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	15-902, gnl\|bosTau2\|chr25 (3823032-3823903)
	15-902, gnl\|Hg17\|chr16 (1410705-1409799)
	15-902, gnl\|Mm7\|chr17 (23367720-23368590)

	pla (0.267344)
	cov (0.264306)
	cbe (0.239234)
	cje (0.165235)
	eli (0.151814)
	hyp (0.142837)
	lnt (0.142308)
	ute (0.132784)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	ecc (0.115035)
	ldo (0.0970026)