Non-Coding RNA Search

Ss1.1-Pig4-TMW8052L03.5

Sequence:


               
               CCTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTCAAGTGGCATTCAAGGGCACAGATGATA
GTTAAGGGTTATTCTGTTCTCCAGGGGGTCAAAGGAATCTTTCTGGGGTAAGTCGGGGGG
CAGTTATTAAGCAGGAAACCACTGTGTGGTAGAGAAAGACTTGGCTTCTCGGGCCACAAA
ATTCCGTGTTATAGGTTTCCTCCTATGACAGTTGCAGAGAGGTTGGCAACTTTTCTCTTG
ACCAGGCCTCTTTTCTCTGTCCTGGCTTTTCCAGCTAGAGTATAAGCCCTCCTCCTGTAT
GTTGATACCTTCCCATACACATACACACCTTCCCACAGTTGGAGCCTGGGGATGGGCTGG
ATCATGTGAAGAGGCCAAAATGAGACTAACCAAAGGGGTTTCATCATCAGTGTCCAGGTG
GAGCTGTTAGGTTGTCAGGGTTTACTGCCACCTGTCTGTGCTTCACTTCTTCCTCTCTCC
TTTATTCCTGACCTCCTATCAGCTCTTCTTTCCCTGCAGCCTAGCAATTCATGATTCTAA
GATGAAAAGTTGAAGGGGAAAAGCAAGATCTCACCTCAGCTCATCTACCATTGTGAGGGA
AAGCTTTGGGTACTGGGACACCACTCTCATTCTTGTCAAAGAAACAGACTGTCCCCCATT
CCTTCCTTTCTAAAAACCAATCCTTCCCCTGTTGCTCTAGGATGATGTTTCATGCTGGCT
TGGCCCATGGCTTCTGGAGGCCCTCTCAGTTTGAGGTAGAGCAGCCAAGACCCATCAGCC
CAGCCTCCTTCCCTTCTCCCCCAAGCATTCCCCTTTGCACAGATTAGGTTGCAGATGGAC
GGTTCAAGAGCAACACGCGTGTTTTTGTTTCTTGCCTGACCTCCGTTCATGGAAGAAAGT
TGAAGCTACAGAATTATTTTCAAAAATAAAGTAAAGGCTGAAATTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTCAAGTGGCATTCAAGGGCACAGATGATA
GTTAAGGGTTATTCTGTTCTCCAGGGGGTCAAAGGAATCTTTCTGGGGTAAGTCGGGGGG
CAGTTATTAAGCAGGAAACCACTGTGTGGTAGAGAAAGACTTGGCTTCTCGGGCCACAAA
ATTCCGTGTTATAGGTTTCCTCCTATGACAGTTGCAGAGAGGTTGGCAACTTTTCTCTTG
ACCAGGCCTCTTTTCTCTGTCCTGGCTTTTCCAGCTAGAGTATAAGCCCTCCTCCTGTAT
GTTGATACCTTCCCATACACATACACACCTTCCCACAGTTGGAGCCTGGGGATGGGCTGG
ATCATGTGAAGAGGCCAAAATGAGACTAACCAAAGGGGTTTCATCATCAGTGTCCAGGTG
GAGCTGTTAGGTTGTCAGGGTTTACTGCCACCTGTCTGTGCTTCACTTCTTCCTCTCTCC
TTTATTCCTGACCTCCTATCAGCTCTTCTTTCCCTGCAGCCTAGCAATTCATGATTCTAA
GATGAAAAGTTGAAGGGGAAAAGCAAGATCTCACCTCAGCTCATCTACCATTGTGAGGGA
AAGCTTTGGGTACTGGGACACCACTCTCATTCTTGTCAAAGAAACAGACTGTCCCCCATT
CCTTCCTTTCTAAAAACCAATCCTTCCCCTGTTGCTCTAGGATGATGTTTCATGCTGGCT
TGGCCCATGGCTTCTGGAGGCCCTCTCAGTTTGAGGTAGAGCAGCCAAGACCCATCAGCC
CAGCCTCCTTCCCTTCTCCCCCAAGCATTCCCCTTTGCACAGATTAGGTTGCAGATGGAC
GGTTCAAGAGCAACACGCGTGTTTTTGTTTCTTGCCTGACCTCCGTTCATGGAAGAAAGT
TGAAGCTACAGAATTATTTTCAAAAATAAAGTAAAGGCTGAAATTGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               158-352, - strand, RNAz p=0.952849
               

               
               416-535, + strand, RNAz p=0.999948

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-352, - strand, RNAz p=0.952849
               

               
               416-535, + strand, RNAz p=0.999948

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002406, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002406, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-931, gnl|bosTau2|chr7 (22398577-22397652)
               

               
               7-931, gnl|Hg17|chr5 (180151129-180150167)
               

               
               7-931, gnl|Mm7|chr11 (49218918-49219767)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-931, gnl|bosTau2|chr7 (22398577-22397652)
               

               
               7-931, gnl|Hg17|chr5 (180151129-180150167)
               

               
               7-931, gnl|Mm7|chr11 (49218918-49219767)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cli (0.458435)
               

               
               amn (0.417711)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               amn (0.417711)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	158-352, - strand, RNAz p=0.952849
	416-535, + strand, RNAz p=0.999948

	7-931, gnl\|bosTau2\|chr7 (22398577-22397652)
	7-931, gnl\|Hg17\|chr5 (180151129-180150167)
	7-931, gnl\|Mm7\|chr11 (49218918-49219767)

	cli (0.458435)
	amn (0.417711)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	thg (0.126791)
	eep (0.122564)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)
	jej (0.0989218)